Rh6BG220500

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011152
Physical Location & Seq
Forward (+)
41642259 .. 41642588
330 bp
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UTR
Exon/CDS
Intron
Rh6BG220500.1

Sequence Viewer

Length: 330 bp
ATGGTGAAGGACAACAATTTACTCAAGGTGTCAAGGTTAATAGTGGACATGGATTTCAAGTCACAATTTGAGCTTGCAAGACCATCACCAAGCTACAAAAAGCTGAAAGACATTTTGCCAGACATTTTTGTTGGGACTGAAGAAAAGCTTGACAAAGTCATATCTCTGGTTTGCTCAGCTGCAAAGAAATCTCTCAAGAAAATGGGTCTTCATGTTCCTCCATGGAGAAAAGCCACCTACATGCAATCCAAGTGGCTCTCCAAAGATTGCAAGAAAATCTCAATCTCACCCACAAACATGGAATTGGGTATCATCTCCCAAATGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

109

Amino Acids

12.47

Weight (kDa)

9.7

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 10 - 88 2.8e-36 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 159
AgsI TTSAA 1 cut(s) 58
AluBI AGCT 5 cut(s) 73, 93, 103, 148, 179
AluI AGCT 5 cut(s) 73, 93, 103, 148, 179
ApeKI GCWGC 1 cut(s) 179
AsuHPI GGTGA 3 cut(s) 16, 78, 279
BbsI GAAGAC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 166
BccI CCATC 1 cut(s) 91
BfaI CTAG 1 cut(s) 328
BisI GCNGC 1 cut(s) 180
BlpI GCTNAGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 200
Bpu1102I GCTNAGC 1 cut(s) 175
BpuEI CTTGAG 2 cut(s) 8, 179
BsaJI CCNNGG 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 221
BseMII CTCAG 1 cut(s) 189
BseXI GCAGC 1 cut(s) 166
BslFI GGGAC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 148
Bsp1720I GCTNAGC 1 cut(s) 175
Bsp19I CCATGG 1 cut(s) 221
BspCNI CTCAG 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 221
BssT1I CCWWGG 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 175
BstDSI CCRYGG 1 cut(s) 221
BstNSI RCATGY 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 200
BstXI CCANNNNNNTGG 1 cut(s) 298
BtgI CCRYGG 1 cut(s) 221
Cac8I GCNNGC 1 cut(s) 75
CspCI CAANNNNNGTGG 2 cut(s) 233, 268
CviAII CATG 5 cut(s) 49, 212, 222, 241, 298
CviJI RGCY 7 cut(s) 73, 93, 103, 148, 179, 233, 256
CviKI_1 RGCY 7 cut(s) 73, 93, 103, 148, 179, 233, 256
DdeI CTNAG 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 221
Eco57I CTGAAG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 5 cut(s) 52, 215, 225, 244, 301
FaiI YATR 6 cut(s) 50, 161, 213, 223, 242, 299
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FaqI GGGAC 1 cut(s) 148
FatI CATG 5 cut(s) 48, 211, 221, 240, 297
Fnu4HI GCNGC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 328
GluI GCNGC 1 cut(s) 180
Hin1II CATG 5 cut(s) 52, 215, 225, 244, 301
HindIII AAGCTT 1 cut(s) 146
HphI GGTGA 3 cut(s) 16, 78, 279
Hpy166II GTNNAC 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 196
Hpy8I GTNNAC 1 cut(s) 46
HpyCH4V TGCA 5 cut(s) 77, 182, 244, 270, 325
HpyF3I CTNAG 1 cut(s) 175
Hsp92II CATG 5 cut(s) 52, 215, 225, 244, 301
LpnPI CCDG 2 cut(s) 132, 152
Lsp1109I GCAGC 1 cut(s) 166
MaeI CTAG 1 cut(s) 328
MaeIII GTNAC 1 cut(s) 60
MboII GAAGA 2 cut(s) 152, 200
MluCI AATT 3 cut(s) 16, 65, 302
MnlI CCTC 1 cut(s) 228
MseI TTAA 1 cut(s) 38
MslI CAYNNNNRTG 2 cut(s) 239, 296
MspA1I CMGCKG 1 cut(s) 179
NcoI CCATGG 1 cut(s) 221
NlaIII CATG 5 cut(s) 52, 215, 225, 244, 301
NmuCI GTSAC 1 cut(s) 60
NspI RCATGY 1 cut(s) 244
PflFI GACNNNGTC 1 cut(s) 155
PkrI GCNGC 1 cut(s) 181
PsyI GACNNNGTC 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 179
RseI CAYNNNNRTG 2 cut(s) 239, 296
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 1 cut(s) 180
SetI ASST 8 cut(s) 30, 38, 75, 95, 105, 150, 181, 239
SmiMI CAYNNNNRTG 2 cut(s) 239, 296
SmlI CTYRAG 2 cut(s) 23, 194
SmoI CTYRAG 2 cut(s) 23, 194
Sse9I AATT 3 cut(s) 16, 65, 302
SspMI CTAG 1 cut(s) 328
StyI CCWWGG 1 cut(s) 221
TasI AATT 3 cut(s) 16, 65, 302
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TseFI GTSAC 1 cut(s) 60
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 60
TspDTI ATGAA 1 cut(s) 200
Tth111I GACNNNGTC 1 cut(s) 155
XceI RCATGY 1 cut(s) 244
XspI CTAG 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.