Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0011152

Physical Location & Seq

Genomic Coordinates Forward (+)

38040865 .. 38041802

Gene Structure 938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG212900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGGAAGCGTCACCGAGGAAGAGCTGGTTCAAATGGTGACAGACTTCATTGAATCTTCAGAGTCAGTTCCTGACTCATTATCTTCTCCCAAATCCCCTCGTCAATCCAAGTCTCTAACTCTACAGGAGATAATATGGAAGGCAACAGATCATGAGAATGAGATACTTGACAAAATATCAATTTATTTGAGGGACCTAGAGAGTATGATTCATCAACCTAAGAATCTGAAGAACAAATGGGTTGTGATGAAACTGAAAATGGATGGTTATGAAGCCTCTCTTTGTAAAACTTCATGGGTTTCTTCTGTTAAACTCCCCGAAGATGACTATGAATATGTTGATGTTATGGTGAAGGACAACAATTTACTCAAGGTGACAAGGTTAATAGTGGACATGGATTTCAAGTCACAATTTGAGCTTGCAAGACCATCACCAAGCTACAAAGAGCTGAAAGACATTTTGCCAGACATTTTTGTTGGGACTGAAGAAAAGCTTGACAAAGTCATATCTCTGGTTTGCTCAGCTGCACAGAAATCTCTCAAGAAAATGGGTCTTCATGTTCCTCCATGGAGAAAAGCCGCCTACATGCAATCCAAGTGGCTCTCCAAAGATTGCAAGAAAATCTCAATCTCACCCACAAACATGGAATTGGGTATCATCTCCCAAATGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDDEXK_6

Protein Analysis

224

Amino Acids

25.67

Weight (kDa)

6.13

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDDEXK_6	PF04720	25 - 203	4.4e-54	PDDEXK-like family of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77145 AT1G77145 AT1G77160 AT1G77160
malus_domestica	MD10G1016300.v1.1
prunus_persica	Prupe.8G020000_v2.0.a1 Prupe.8G020000_v2.0.a1 Prupe.8G020000_v2.0.a1
pyrus_communis	pycom05g00920
rosa_chinensis	RchiOBHm_Chr6g0277051
rosa_laevigata	RLG00000013341
rosa_multiflora	Rmu_sc0000206.1_g000008
rosa_roxburghii	Rroxscaffold_7G00191730
rosa_rugosa	Rorug06G0105900 Rorug06G0106000
rosa_samantha	Rh6AG215900 Rh6BG220500 Rh6CG223300 Rh6DG212900
rosa_wichuraiana	Rw6G018840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	579
AcuI	CTGAAG	3 cut(s)	42, 248, 504
AgsI	TTSAA	3 cut(s)	32, 53, 403
AluBI	AGCT	6 cut(s)	25, 418, 438, 448, 493, 524
AluI	AGCT	6 cut(s)	25, 418, 438, 448, 493, 524
Alw26I	GTCTC	1 cut(s)	117
AlwNI	CAGNNNCTG	1 cut(s)	71
ApeKI	GCWGC	1 cut(s)	524
AspS9I	GGNCC	1 cut(s)	193
AsuHPI	GGTGA	6 cut(s)	4, 49, 361, 385, 423, 624
AvaII	GGWCC	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	545
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	2 cut(s)	257, 436
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	2 cut(s)	197, 673
BfmI	CTRYAG	1 cut(s)	122
BisI	GCNGC	2 cut(s)	525, 579
BlpI	GCTNAGC	1 cut(s)	520
BlsI	GCNGC	2 cut(s)	526, 580
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	545
Bpu1102I	GCTNAGC	1 cut(s)	520
BpuEI	CTTGAG	2 cut(s)	353, 524
BsaJI	CCNNGG	2 cut(s)	15, 566
BseDI	CCNNGG	2 cut(s)	15, 566
BseGI	GGATG	1 cut(s)	268
BseMII	CTCAG	1 cut(s)	534
BseXI	GCAGC	1 cut(s)	511
BsgI	GTGCAG	1 cut(s)	510
BslFI	GGGAC	2 cut(s)	206, 493
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	2 cut(s)	206, 493
Bsp143I	GATC	1 cut(s)	148
Bsp1720I	GCTNAGC	1 cut(s)	520
Bsp19I	CCATGG	1 cut(s)	566
BspACI	CCGC	1 cut(s)	579
BspCNI	CTCAG	1 cut(s)	533
BspHI	TCATGA	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	194
BspQI	GCTCTTC	1 cut(s)	15
BssECI	CCNNGG	2 cut(s)	15, 566
BssMI	GATC	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	566
Bst6I	CTCTTC	1 cut(s)	15
BstC8I	GCNNGC	1 cut(s)	420
BstDEI	CTNAG	2 cut(s)	219, 520
BstDSI	CCRYGG	1 cut(s)	566
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	589
BstSFI	CTRYAG	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	511
BstV2I	GAAGAC	1 cut(s)	545
BstXI	CCANNNNNNTGG	1 cut(s)	643
BtgI	CCRYGG	1 cut(s)	566
BtsCI	GGATG	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	420
CaiI	CAGNNNCTG	1 cut(s)	71
CciI	TCATGA	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	193
CspCI	CAANNNNNGTGG	2 cut(s)	578, 613
CviAII	CATG	7 cut(s)	152, 294, 394, 557, 567, 586, 643
CviJI	RGCY	9 cut(s)	25, 275, 418, 438, 448, 493, 524, 578, 601
CviKI_1	RGCY	9 cut(s)	25, 275, 418, 438, 448, 493, 524, 578, 601
DdeI	CTNAG	2 cut(s)	219, 520
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	193
Eco57I	CTGAAG	3 cut(s)	42, 248, 504
EcoO109I	RGGNCCY	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	566
ErhI	CCWWGG	1 cut(s)	566
FaeI	CATG	7 cut(s)	155, 297, 397, 560, 570, 589, 646
FalI	AAGNNNNNCTT	4 cut(s)	264, 296, 477, 509
FaqI	GGGAC	2 cut(s)	206, 493
FatI	CATG	7 cut(s)	151, 293, 393, 556, 566, 585, 642
Fnu4HI	GCNGC	2 cut(s)	525, 579
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	2 cut(s)	525, 579
FspBI	CTAG	2 cut(s)	197, 673
GluI	GCNGC	2 cut(s)	525, 579
Hin1II	CATG	7 cut(s)	155, 297, 397, 560, 570, 589, 646
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	5 cut(s)	53, 62, 74, 208, 223
HphI	GGTGA	6 cut(s)	4, 49, 361, 385, 423, 624
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	2 cut(s)	61, 228
Hpy188III	TCNNGA	3 cut(s)	71, 152, 541
Hpy8I	GTNNAC	1 cut(s)	391
HpyAV	CCTTC	2 cut(s)	133, 346
HpyCH4V	TGCA	5 cut(s)	422, 527, 589, 615, 670
HpyF3I	CTNAG	2 cut(s)	219, 520
Hsp92II	CATG	7 cut(s)	155, 297, 397, 560, 570, 589, 646
Kzo9I	GATC	1 cut(s)	148
LguI	GCTCTTC	1 cut(s)	15
LpnPI	CCDG	5 cut(s)	11, 84, 110, 477, 497
Lsp1109I	GCAGC	1 cut(s)	511
MaeI	CTAG	2 cut(s)	197, 673
MaeIII	GTNAC	4 cut(s)	10, 37, 373, 405
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	8 cut(s)	32, 48, 75, 241, 294, 332, 497, 545
MluCI	AATT	4 cut(s)	180, 361, 410, 647
MlyI	GAGTC	2 cut(s)	68, 71
MnlI	CCTC	5 cut(s)	10, 108, 183, 286, 573
MseI	TTAA	2 cut(s)	309, 383
MslI	CAYNNNNRTG	2 cut(s)	156, 641
MspA1I	CMGCKG	1 cut(s)	524
NcoI	CCATGG	1 cut(s)	566
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	7 cut(s)	155, 297, 397, 560, 570, 589, 646
NlaIV	GGNNCC	1 cut(s)	194
NmuCI	GTSAC	4 cut(s)	10, 37, 373, 405
NspI	RCATGY	1 cut(s)	589
PagI	TCATGA	1 cut(s)	151
PciSI	GCTCTTC	1 cut(s)	15
PfeI	GAWTC	3 cut(s)	53, 208, 223
PflFI	GACNNNGTC	1 cut(s)	500
PkrI	GCNGC	2 cut(s)	526, 580
PleI	GAGTC	2 cut(s)	68, 70
PpsI	GAGTC	2 cut(s)	68, 70
PpuMI	RGGWCCY	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	194
PspPI	GGNCC	1 cut(s)	193
PspPPI	RGGWCCY	1 cut(s)	193
PstNI	CAGNNNCTG	1 cut(s)	71
PsyI	GACNNNGTC	1 cut(s)	500
PvuII	CAGCTG	1 cut(s)	524
RseI	CAYNNNNRTG	2 cut(s)	156, 641
SapI	GCTCTTC	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	309, 383
SatI	GCNGC	2 cut(s)	525, 579
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	1 cut(s)	193
SchI	GAGTC	2 cut(s)	68, 71
SfcI	CTRYAG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	193
SmiMI	CAYNNNNRTG	2 cut(s)	156, 641
SmlI	CTYRAG	2 cut(s)	368, 539
SmoI	CTYRAG	2 cut(s)	368, 539
Sse9I	AATT	4 cut(s)	180, 361, 410, 647
SsiI	CCGC	1 cut(s)	579
SspMI	CTAG	2 cut(s)	197, 673
StyI	CCWWGG	1 cut(s)	566
TasI	AATT	4 cut(s)	180, 361, 410, 647
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	3 cut(s)	53, 208, 223
Tru1I	TTAA	2 cut(s)	309, 383
Tru9I	TTAA	2 cut(s)	309, 383
TseFI	GTSAC	4 cut(s)	10, 37, 373, 405
TseI	GCWGC	1 cut(s)	524
Tsp45I	GTSAC	4 cut(s)	10, 37, 373, 405
TspDTI	ATGAA	7 cut(s)	37, 200, 263, 282, 285, 345, 545
Tth111I	GACNNNGTC	1 cut(s)	500
VpaK11BI	GGWCC	1 cut(s)	193
XceI	RCATGY	1 cut(s)	589
XspI	CTAG	2 cut(s)	197, 673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.