MD10G1016300.v1.1

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0011152
Physical Location & Seq
Reverse (-)
2130246 .. 2131588
1343 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1016300.v1.1.491

Sequence Viewer

Length: 660 bp
ATGGAGAGCCTAACAGAAGAAGAACTGATGCAAATGGTGAGAGACTTCAATGAATCTTATTCATCAGACTCCTCCTCAGCAGCTCCCAATTCAAACCCTCTCTCCCCCACTCGTCAACCCAAATTTCTCACTTTACAGGACTTGGTATGGAAGGCAACAGATTGTGAGATTGAGATTCTTCAGAAAATCTTGAAGTATTTGAGAGACATGGGGGCTGTGGTGGAACCCAACAATCTGAAAAATAAATGCGTTGTGATGAAACTAAATGAGGATGGTTATGAAGCTTCCCTTTGCAAAACTTCATGGGTTTCATCTTTGAGGCTCTCTAAAGGTGGATATGAATATGTTGATGTAATGGTGAGGGAGAAGAAGAACAACAATGTTAAAGATGGTGGAAAAGTGACAAGGCTCATAGTAGACATAGATTTCAGGTCACAATTCGAAGTGGCAAGACCTACACAGAACTACAAGCAGCTCAAAGACACTCTGCCCACCATTTTTGTTGGGACTGAAGAGAAACTTGACAAGATCATATCTCTCCTTTGCTCAGCTGCAAAGCAATCTCTCAGGGAGAGTGGCCTCCATATTCCTCCTTGGAGACAAGCCAGCTACATGCAGTCCAAGTGGCTCTCCAAAGACTGCAAAAAAATATCTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

220

Amino Acids

25.01

Weight (kDa)

8.49

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 13 - 212 2.5e-55 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 417
AcsI RAATTY 1 cut(s) 122
AcuI CTGAAG 2 cut(s) 164, 531
AgsI TTSAA 3 cut(s) 49, 93, 193
AluBI AGCT 5 cut(s) 83, 284, 475, 551, 609
AluI AGCT 5 cut(s) 83, 284, 475, 551, 609
Alw26I GTCTC 3 cut(s) 36, 198, 592
AoxI GGCC 1 cut(s) 577
ApeKI GCWGC 3 cut(s) 80, 472, 551
ApoI RAATTY 1 cut(s) 122
AsuHPI GGTGA 2 cut(s) 49, 370
AsuII TTCGAA 1 cut(s) 441
BbvCI CCTCAGC 1 cut(s) 76
BbvI GCAGC 3 cut(s) 92, 484, 538
BccI CCATC 2 cut(s) 266, 383
BcoDI GTCTC 3 cut(s) 36, 198, 592
BisI GCNGC 3 cut(s) 81, 473, 552
BlpI GCTNAGC 1 cut(s) 547
BlsI GCNGC 3 cut(s) 82, 474, 553
BmiI GGNNCC 1 cut(s) 225
BmsI GCATC 1 cut(s) 18
Bpu10I CCTNAGC 1 cut(s) 76
Bpu1102I GCTNAGC 1 cut(s) 547
Bpu14I TTCGAA 1 cut(s) 441
BsaJI CCNNGG 1 cut(s) 593
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
BseDI CCNNGG 1 cut(s) 593
BseGI GGATG 1 cut(s) 277
BseMII CTCAG 3 cut(s) 90, 561, 580
BseRI GAGGAG 2 cut(s) 61, 64
BseXI GCAGC 3 cut(s) 92, 484, 538
BshFI GGCC 1 cut(s) 579
BslFI GGGAC 1 cut(s) 520
BsmAI GTCTC 3 cut(s) 36, 198, 592
BsmFI GGGAC 1 cut(s) 520
BsnI GGCC 1 cut(s) 579
Bsp119I TTCGAA 1 cut(s) 441
Bsp143I GATC 1 cut(s) 528
Bsp1720I GCTNAGC 1 cut(s) 547
BspANI GGCC 1 cut(s) 579
BspCNI CTCAG 3 cut(s) 89, 560, 579
BspLI GGNNCC 1 cut(s) 225
BspT104I TTCGAA 1 cut(s) 441
BssECI CCNNGG 1 cut(s) 593
BssMI GATC 1 cut(s) 528
BssT1I CCWWGG 1 cut(s) 593
Bst6I CTCTTC 1 cut(s) 507
BstBI TTCGAA 1 cut(s) 441
BstC8I GCNNGC 1 cut(s) 607
BstDEI CTNAG 3 cut(s) 76, 547, 566
BstF5I GGATG 1 cut(s) 277
BstKTI GATC 1 cut(s) 531
BstMAI GTCTC 3 cut(s) 36, 198, 592
BstMBI GATC 1 cut(s) 528
BstNSI RCATGY 1 cut(s) 616
BstV1I GCAGC 3 cut(s) 92, 484, 538
BsuRI GGCC 1 cut(s) 579
BtsCI GGATG 1 cut(s) 277
Cac8I GCNNGC 1 cut(s) 607
CspCI CAANNNNNGTGG 2 cut(s) 481, 516
CviAII CATG 3 cut(s) 208, 303, 613
DdeI CTNAG 3 cut(s) 76, 547, 566
DpnI GATC 1 cut(s) 530
DpnII GATC 1 cut(s) 528
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
Eco130I CCWWGG 1 cut(s) 593
Eco57I CTGAAG 2 cut(s) 164, 531
EcoT14I CCWWGG 1 cut(s) 593
ErhI CCWWGG 1 cut(s) 593
FaeI CATG 3 cut(s) 211, 306, 616
FalI AAGNNNNNCTT 4 cut(s) 273, 305, 504, 536
FaqI GGGAC 1 cut(s) 520
FatI CATG 3 cut(s) 207, 302, 612
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 3 cut(s) 81, 473, 552
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 3 cut(s) 81, 473, 552
GluI GCNGC 3 cut(s) 81, 473, 552
HaeIII GGCC 1 cut(s) 579
Hin1II CATG 3 cut(s) 211, 306, 616
HincII GTYRAC 1 cut(s) 116
HindII GTYRAC 1 cut(s) 116
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 3 cut(s) 53, 68, 175
HphI GGTGA 2 cut(s) 49, 370
Hpy166II GTNNAC 2 cut(s) 116, 418
Hpy188I TCNGA 3 cut(s) 67, 183, 237
Hpy188III TCNNGA 1 cut(s) 190
Hpy8I GTNNAC 2 cut(s) 116, 418
HpyAV CCTTC 1 cut(s) 145
HpyCH4V TGCA 5 cut(s) 31, 294, 554, 616, 642
HpyF3I CTNAG 3 cut(s) 76, 547, 566
Hsp92II CATG 3 cut(s) 211, 306, 616
Kzo9I GATC 1 cut(s) 528
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 4 cut(s) 122, 415, 553, 619
Lsp1109I GCAGC 3 cut(s) 92, 484, 538
LweI GCATC 1 cut(s) 18
MaeIII GTNAC 2 cut(s) 400, 432
MalI GATC 1 cut(s) 530
MboI GATC 1 cut(s) 528
MboII GAAGA 6 cut(s) 29, 32, 170, 379, 382, 524
MluCI AATT 3 cut(s) 88, 122, 437
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 8 cut(s) 82, 85, 108, 262, 312, 354, 590, 600
MseI TTAA 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 551
NdeII GATC 1 cut(s) 528
NlaIII CATG 3 cut(s) 211, 306, 616
NlaIV GGNNCC 1 cut(s) 225
NmuCI GTSAC 2 cut(s) 400, 432
NspI RCATGY 1 cut(s) 616
NspV TTCGAA 1 cut(s) 441
PfeI GAWTC 2 cut(s) 53, 175
PkrI GCNGC 3 cut(s) 82, 474, 553
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 225
PvuII CAGCTG 1 cut(s) 551
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 3 cut(s) 81, 473, 552
Sau3AI GATC 1 cut(s) 528
SchI GAGTC 1 cut(s) 62
SetI ASST 8 cut(s) 85, 286, 334, 434, 457, 477, 553, 611
SfaNI GCATC 1 cut(s) 18
SfuI TTCGAA 1 cut(s) 441
Sse9I AATT 3 cut(s) 88, 122, 437
StyI CCWWGG 1 cut(s) 593
TaqI TCGA 1 cut(s) 441
TasI AATT 3 cut(s) 88, 122, 437
TfiI GAWTC 2 cut(s) 53, 175
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TseFI GTSAC 2 cut(s) 400, 432
TseI GCWGC 3 cut(s) 80, 472, 551
Tsp45I GTSAC 2 cut(s) 400, 432
TspDTI ATGAA 7 cut(s) 51, 66, 272, 291, 294, 300, 354
XapI RAATTY 1 cut(s) 122
XceI RCATGY 1 cut(s) 616
XmiI GTMKAC 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.