Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011152

Physical Location & Seq

Genomic Coordinates Reverse (-)

1105644 .. 1106873

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00920.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGATACAAACCTTCTTTCTCCATACCTGGGAAGGAAGGAAGGAAGAAAAGAGAAAAGAATAATGGGGAGCCTAACAGAAGAACAACTGATGCAAATGGTGAGAGACTTTAATGAATCTTATTCATCAGACTCCTCCTCCTCAGCAGCTCCCAATTCAAACCCCCTCAATTCCAATCGTCAACCTAATTTACTCACTCTACAGGACTTAATATGGAAGGCAACAGACTGTGAGATTGAGATTCTTGAGAAAATCTTGAAGCATTTGAGCGACATGGGGACCGTGGTGGAACCCAACAATCTGAAAAATAAATGGGTTGTGAGGAAACTAAATGAGGATGGTTATGAAGCCTCCCTTTGCAAAACTTCATGGGTTTCTTCTTTTAGGCTCCCTAAAGGTGTTGAATATACAGGTGGATATGAGTACGTTGATGTAATGGTGAGGGAGAAGAAGAACAACAATGTTGAAGATGGTGGAAAAGTGACAAGGCTGATAGTGGACATGGATTTCAGGTCACAATTCGAAGTGGCAAGACCTTCACAGAACTACAAGCAGCTCAAAGACGCTCTGCCAACCATTTTTGTTGGAACTGAGGCAAAACTTGACAAGATTATATCTCTGCTTTGCTCAGCTGCAAAACATTCTCTCAGGGAGAATGGCCTCGATGTTCCTCCTTGGAGAAAAGCCAGCTACATGCAGTCCAAGTGGCTCTCCAAAGACTGCAAAAAAATCTCCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDDEXK_6

Protein Analysis

247

Amino Acids

28.06

Weight (kDa)

8.73

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77145 AT1G77145 AT1G77160 AT1G77160
malus_domestica	MD10G1016300.v1.1
prunus_persica	Prupe.8G020000_v2.0.a1 Prupe.8G020000_v2.0.a1 Prupe.8G020000_v2.0.a1
pyrus_communis	pycom05g00920
rosa_chinensis	RchiOBHm_Chr6g0277051
rosa_laevigata	RLG00000013341
rosa_multiflora	Rmu_sc0000206.1_g000008
rosa_roxburghii	Rroxscaffold_7G00191730
rosa_rugosa	Rorug06G0105900 Rorug06G0106000
rosa_samantha	Rh6AG215900 Rh6BG220500 Rh6CG223300 Rh6DG212900
rosa_wichuraiana	Rw6G018840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	4 cut(s)	159, 259, 404, 467
AjnI	CCWGG	1 cut(s)	27
AluBI	AGCT	4 cut(s)	149, 556, 632, 690
AluI	AGCT	4 cut(s)	149, 556, 632, 690
Alw26I	GTCTC	1 cut(s)	99
AoxI	GGCC	1 cut(s)	658
ApeKI	GCWGC	3 cut(s)	146, 553, 632
AspS9I	GGNCC	1 cut(s)	279
AsuHPI	GGTGA	2 cut(s)	112, 451
AsuII	TTCGAA	1 cut(s)	522
AvaII	GGWCC	1 cut(s)	279
BbvCI	CCTCAGC	1 cut(s)	142
BbvI	GCAGC	3 cut(s)	158, 565, 619
BccI	CCATC	2 cut(s)	332, 464
BciT130I	CCWGG	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	99
BfmI	CTRYAG	1 cut(s)	200
BisI	GCNGC	3 cut(s)	147, 554, 633
BlpI	GCTNAGC	1 cut(s)	628
BlsI	GCNGC	3 cut(s)	148, 555, 634
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	4 cut(s)	71, 280, 291, 389
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	81
Bpu10I	CCTNAGC	1 cut(s)	142
Bpu1102I	GCTNAGC	1 cut(s)	628
Bpu14I	TTCGAA	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	266
BsaJI	CCNNGG	3 cut(s)	28, 282, 674
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	3 cut(s)	28, 282, 674
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMII	CTCAG	4 cut(s)	156, 582, 642, 661
BseRI	GAGGAG	3 cut(s)	124, 127, 130
BseXI	GCAGC	3 cut(s)	158, 565, 619
BshFI	GGCC	1 cut(s)	660
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	660
Bsp119I	TTCGAA	1 cut(s)	522
Bsp1720I	GCTNAGC	1 cut(s)	628
BspANI	GGCC	1 cut(s)	660
BspCNI	CTCAG	4 cut(s)	155, 583, 641, 660
BspLI	GGNNCC	4 cut(s)	71, 280, 291, 389
BspT104I	TTCGAA	1 cut(s)	522
BssECI	CCNNGG	3 cut(s)	28, 282, 674
BssT1I	CCWWGG	1 cut(s)	674
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	230, 283
BstBI	TTCGAA	1 cut(s)	522
BstC8I	GCNNGC	1 cut(s)	688
BstDEI	CTNAG	4 cut(s)	142, 591, 628, 647
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	343
BstMAI	GTCTC	1 cut(s)	99
BstNI	CCWGG	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	697
BstSCI	CCNGG	1 cut(s)	27
BstSFI	CTRYAG	1 cut(s)	200
BstV1I	GCAGC	3 cut(s)	158, 565, 619
BsuRI	GGCC	1 cut(s)	660
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	688
Cfr13I	GGNCC	1 cut(s)	279
CseI	GACGC	1 cut(s)	572
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	4 cut(s)	274, 369, 502, 694
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	4 cut(s)	142, 591, 628, 647
Eco130I	CCWWGG	1 cut(s)	674
Eco47I	GGWCC	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	674
ErhI	CCWWGG	1 cut(s)	674
FaeI	CATG	4 cut(s)	277, 372, 505, 697
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	4 cut(s)	273, 368, 501, 693
Fnu4HI	GCNGC	3 cut(s)	147, 554, 633
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	3 cut(s)	147, 554, 633
GluI	GCNGC	3 cut(s)	147, 554, 633
HaeIII	GGCC	1 cut(s)	660
HgaI	GACGC	1 cut(s)	572
Hin1II	CATG	4 cut(s)	277, 372, 505, 697
HincII	GTYRAC	1 cut(s)	182
HindII	GTYRAC	1 cut(s)	182
HinfI	GANTC	3 cut(s)	116, 131, 241
HphI	GGTGA	2 cut(s)	112, 451
Hpy166II	GTNNAC	2 cut(s)	182, 499
Hpy188I	TCNGA	2 cut(s)	130, 303
Hpy188III	TCNNGA	2 cut(s)	245, 256
Hpy8I	GTNNAC	2 cut(s)	182, 499
HpyAV	CCTTC	6 cut(s)	23, 27, 31, 35, 211, 546
HpyCH4III	ACNGT	2 cut(s)	230, 283
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	5 cut(s)	94, 360, 635, 697, 723
HpyF3I	CTNAG	4 cut(s)	142, 591, 628, 647
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	4 cut(s)	277, 372, 505, 697
LmnI	GCTCC	3 cut(s)	69, 154, 393
LpnPI	CCDG	7 cut(s)	14, 41, 188, 396, 496, 634, 700
Lsp1109I	GCAGC	3 cut(s)	158, 565, 619
LweI	GCATC	1 cut(s)	81
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	2 cut(s)	481, 513
MboII	GAAGA	6 cut(s)	57, 92, 369, 460, 463, 479
MluCI	AATT	4 cut(s)	154, 169, 187, 518
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	565
MseI	TTAA	2 cut(s)	111, 209
MspA1I	CMGCKG	1 cut(s)	632
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
NlaIII	CATG	4 cut(s)	277, 372, 505, 697
NlaIV	GGNNCC	4 cut(s)	71, 280, 291, 389
NmuCI	GTSAC	2 cut(s)	481, 513
NspI	RCATGY	1 cut(s)	697
NspV	TTCGAA	1 cut(s)	522
PfeI	GAWTC	2 cut(s)	116, 241
PkrI	GCNGC	3 cut(s)	148, 555, 634
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	4 cut(s)	71, 280, 291, 389
PspPI	GGNCC	1 cut(s)	279
PvuII	CAGCTG	1 cut(s)	632
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
SaqAI	TTAA	2 cut(s)	111, 209
SatI	GCNGC	3 cut(s)	147, 554, 633
Sau96I	GGNCC	1 cut(s)	279
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	29
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	200
SfuI	TTCGAA	1 cut(s)	522
SinI	GGWCC	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	4 cut(s)	154, 169, 187, 518
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	674
TaaI	ACNGT	2 cut(s)	230, 283
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	2 cut(s)	522, 663
TasI	AATT	4 cut(s)	154, 169, 187, 518
TfiI	GAWTC	2 cut(s)	116, 241
Tru1I	TTAA	2 cut(s)	111, 209
Tru9I	TTAA	2 cut(s)	111, 209
TseFI	GTSAC	2 cut(s)	481, 513
TseI	GCWGC	3 cut(s)	146, 553, 632
Tsp45I	GTSAC	2 cut(s)	481, 513
TspDTI	ATGAA	4 cut(s)	114, 129, 357, 360
VpaK11BI	GGWCC	1 cut(s)	279
XceI	RCATGY	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.