Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0011152

Physical Location & Seq

Genomic Coordinates Reverse (-)

32434893 .. 32435953

Gene Structure 1061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00191730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGGAAGCGTCACTGAGGAAGAGCTGGTTCAAATGGTGACAGAATTCATTGAATCTTCAGGGTCAGTTCCTGACTCATTATCTTCTCCCAAATCCCCTCGTCAATCCAAGTCTCTAACTCTACAGGAGATAATATGGAAGGCAACAGATCATGAGAATGAGATACTTCACAAAATATCAATTTATTTGAGGGACCTAGAGAGTATGATTGATCAACCTAAGAATCTGAAGAACAAATGGGTTGTGATGAAACTGAAAATGGATGGTTATGAAGCCTCTCTTTGTAAAACTTCATGGGTTTCTTCTGTTAAACTCCCCGAAGTTTATGAATTTACAGATGACTATGAATATGTTGATGTTATGATGAAGGACAACAATTTACTCAAGGTGACAAGGTTAATAGTGGACATGGATTTCAAGTCACAATTTGAGCTTGCAAGACCATCACCAAGCTACAAAGAGCTGAAAGACATTTTGCCAGACATTTTTGTTGGGACTGAAGAAAAGCTTGACAAAATCATATCTCTGGTTTGCTCAGCTGCAAAGAAATCTCTCAAGAAAATGGGTCTTCATGTTCCTCCATGGAGAAAAGCCACCTACATGCAGTCCAAGTGGCTCTCCAAAGATTGCAAGAAAATCTCAATCTCACCCACAAACATGGAATTGGGTATCATCTCCCAAATGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDDEXK_6

Protein Analysis

229

Amino Acids

26.33

Weight (kDa)

6.45

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDDEXK_6	PF04720	27 - 208	1.2e-51	PDDEXK-like family of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77145 AT1G77145 AT1G77160 AT1G77160
malus_domestica	MD10G1016300.v1.1
prunus_persica	Prupe.8G020000_v2.0.a1 Prupe.8G020000_v2.0.a1 Prupe.8G020000_v2.0.a1
pyrus_communis	pycom05g00920
rosa_chinensis	RchiOBHm_Chr6g0277051
rosa_laevigata	RLG00000013341
rosa_multiflora	Rmu_sc0000206.1_g000008
rosa_roxburghii	Rroxscaffold_7G00191730
rosa_rugosa	Rorug06G0105900 Rorug06G0106000
rosa_samantha	Rh6AG215900 Rh6BG220500 Rh6CG223300 Rh6DG212900
rosa_wichuraiana	Rw6G018840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	44, 329
AcuI	CTGAAG	3 cut(s)	42, 248, 519
AgsI	TTSAA	3 cut(s)	32, 53, 418
AluBI	AGCT	6 cut(s)	25, 433, 453, 463, 508, 539
AluI	AGCT	6 cut(s)	25, 433, 453, 463, 508, 539
Alw26I	GTCTC	1 cut(s)	117
AlwNI	CAGNNNCTG	1 cut(s)	71
ApeKI	GCWGC	1 cut(s)	539
ApoI	RAATTY	2 cut(s)	44, 329
AspS9I	GGNCC	1 cut(s)	193
AsuHPI	GGTGA	4 cut(s)	49, 400, 438, 639
AvaII	GGWCC	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	560
BbvI	GCAGC	1 cut(s)	526
BccI	CCATC	2 cut(s)	257, 451
BclI	TGATCA	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	2 cut(s)	197, 688
BfmI	CTRYAG	1 cut(s)	122
BisI	GCNGC	1 cut(s)	540
BlpI	GCTNAGC	1 cut(s)	535
BlsI	GCNGC	1 cut(s)	541
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	560
Bpu1102I	GCTNAGC	1 cut(s)	535
BpuEI	CTTGAG	2 cut(s)	368, 539
BsaJI	CCNNGG	1 cut(s)	581
BseDI	CCNNGG	1 cut(s)	581
BseGI	GGATG	1 cut(s)	268
BseMII	CTCAG	2 cut(s)	6, 549
BseXI	GCAGC	1 cut(s)	526
BslFI	GGGAC	2 cut(s)	206, 508
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	2 cut(s)	206, 508
Bsp143I	GATC	2 cut(s)	148, 211
Bsp1720I	GCTNAGC	1 cut(s)	535
Bsp19I	CCATGG	1 cut(s)	581
BspCNI	CTCAG	2 cut(s)	7, 548
BspHI	TCATGA	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	194
BspQI	GCTCTTC	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	581
BssMI	GATC	2 cut(s)	148, 211
BssT1I	CCWWGG	1 cut(s)	581
Bst6I	CTCTTC	1 cut(s)	15
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	3 cut(s)	15, 219, 535
BstDSI	CCRYGG	1 cut(s)	581
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	2 cut(s)	151, 214
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	2 cut(s)	148, 211
BstNSI	RCATGY	1 cut(s)	604
BstSFI	CTRYAG	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	526
BstV2I	GAAGAC	1 cut(s)	560
BstXI	CCANNNNNNTGG	1 cut(s)	658
BtgI	CCRYGG	1 cut(s)	581
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	435
CaiI	CAGNNNCTG	1 cut(s)	71
CciI	TCATGA	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	193
CviAII	CATG	7 cut(s)	152, 294, 409, 572, 582, 601, 658
CviJI	RGCY	9 cut(s)	25, 275, 433, 453, 463, 508, 539, 593, 616
CviKI_1	RGCY	9 cut(s)	25, 275, 433, 453, 463, 508, 539, 593, 616
DdeI	CTNAG	3 cut(s)	15, 219, 535
DpnI	GATC	2 cut(s)	150, 213
DpnII	GATC	2 cut(s)	148, 211
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	581
Eco47I	GGWCC	1 cut(s)	193
Eco57I	CTGAAG	3 cut(s)	42, 248, 519
EcoO109I	RGGNCCY	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	581
ErhI	CCWWGG	1 cut(s)	581
FaeI	CATG	7 cut(s)	155, 297, 412, 575, 585, 604, 661
FalI	AAGNNNNNCTT	4 cut(s)	264, 296, 492, 524
FaqI	GGGAC	2 cut(s)	206, 508
FatI	CATG	7 cut(s)	151, 293, 408, 571, 581, 600, 657
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	540
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	540
FspBI	CTAG	2 cut(s)	197, 688
GluI	GCNGC	1 cut(s)	540
Hin1II	CATG	7 cut(s)	155, 297, 412, 575, 585, 604, 661
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	3 cut(s)	53, 74, 223
HphI	GGTGA	4 cut(s)	49, 400, 438, 639
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	1 cut(s)	228
Hpy188III	TCNNGA	3 cut(s)	71, 152, 556
Hpy8I	GTNNAC	1 cut(s)	406
HpyAV	CCTTC	2 cut(s)	133, 361
HpyCH4V	TGCA	5 cut(s)	437, 542, 604, 630, 685
HpyF3I	CTNAG	3 cut(s)	15, 219, 535
Hsp92II	CATG	7 cut(s)	155, 297, 412, 575, 585, 604, 661
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	148, 211
LguI	GCTCTTC	1 cut(s)	15
LpnPI	CCDG	6 cut(s)	11, 45, 84, 110, 492, 512
Lsp1109I	GCAGC	1 cut(s)	526
MaeI	CTAG	2 cut(s)	197, 688
MaeIII	GTNAC	4 cut(s)	10, 37, 388, 420
MalI	GATC	2 cut(s)	150, 213
MboI	GATC	2 cut(s)	148, 211
MboII	GAAGA	7 cut(s)	32, 48, 75, 241, 294, 512, 560
MluCI	AATT	6 cut(s)	44, 180, 329, 376, 425, 662
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	5 cut(s)	10, 108, 183, 286, 588
MseI	TTAA	2 cut(s)	309, 398
MslI	CAYNNNNRTG	3 cut(s)	156, 599, 656
MspA1I	CMGCKG	1 cut(s)	539
NcoI	CCATGG	1 cut(s)	581
NdeII	GATC	2 cut(s)	148, 211
NlaIII	CATG	7 cut(s)	155, 297, 412, 575, 585, 604, 661
NlaIV	GGNNCC	1 cut(s)	194
NmuCI	GTSAC	4 cut(s)	10, 37, 388, 420
NspI	RCATGY	1 cut(s)	604
PagI	TCATGA	1 cut(s)	151
PciSI	GCTCTTC	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	53, 223
PkrI	GCNGC	1 cut(s)	541
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PpuMI	RGGWCCY	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	194
PspPI	GGNCC	1 cut(s)	193
PspPPI	RGGWCCY	1 cut(s)	193
PstNI	CAGNNNCTG	1 cut(s)	71
PvuII	CAGCTG	1 cut(s)	539
RseI	CAYNNNNRTG	3 cut(s)	156, 599, 656
SapI	GCTCTTC	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	309, 398
SatI	GCNGC	1 cut(s)	540
Sau3AI	GATC	2 cut(s)	148, 211
Sau96I	GGNCC	1 cut(s)	193
SchI	GAGTC	1 cut(s)	68
SfcI	CTRYAG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	193
SmiMI	CAYNNNNRTG	3 cut(s)	156, 599, 656
SmlI	CTYRAG	2 cut(s)	383, 554
SmoI	CTYRAG	2 cut(s)	383, 554
Sse9I	AATT	6 cut(s)	44, 180, 329, 376, 425, 662
SspMI	CTAG	2 cut(s)	197, 688
StyI	CCWWGG	1 cut(s)	581
TasI	AATT	6 cut(s)	44, 180, 329, 376, 425, 662
TfiI	GAWTC	2 cut(s)	53, 223
Tru1I	TTAA	2 cut(s)	309, 398
Tru9I	TTAA	2 cut(s)	309, 398
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	4 cut(s)	10, 37, 388, 420
TseI	GCWGC	1 cut(s)	539
Tsp45I	GTSAC	4 cut(s)	10, 37, 388, 420
TspDTI	ATGAA	8 cut(s)	37, 263, 282, 285, 342, 360, 380, 560
TspRI	CASTG	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	193
XapI	RAATTY	2 cut(s)	44, 329
XceI	RCATGY	1 cut(s)	604
XspI	CTAG	2 cut(s)	197, 688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.