Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011152

Physical Location & Seq

Genomic Coordinates Forward (+)

39406516 .. 39407453

Gene Structure 938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24853

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGGAAGCGTCACCGAGGAAGAGCTGGTTCAAATGGTGACAGACTTCATTGAATCTTCAGAGTCAGTTCCTGACTCATTATCTTCTCCCAAATCCCCTCGTCAATCCAAGTCTCTAACTCTACAGGAGATAATATGGAAGGCAACAGATCATGAGAATGAGATACTTGACAAAATATCAATTTATTTGAGGGACCTAGAGAGTATGATTCATCAACCTAAGAATCTGAAGAACAAATGGGTTGTGATGAAACTGAAAATGGATGGTTATGAAGCCTCTCTTTGTAAAACTTCATGGGTTTCTTCTGTTAAACTCCCCGAAGATGACTATGAATATGTTGATGTTATGGTGAAGGACAACAATTTACTCAAGGTGACAAGGTTAATAGTGGACATGGATTTCAAGTCACAATTTGAGCTTGCAAGACCATCACCAAGCTACAAAGAGCTGAAAGACATTTTGCCAGACATTTTTGTTGGGACTGAAGAAAAGCTTGACAAAGTCATATCTCTGGTTTGCTCAGCTGCACAGAAATCTCTCAAGAAAATGGGTCTTCATGTTCCTCCATGGAGAAAAGCCGCCTACATGCAATCCAAGTGGCTCTCCAAAGATTGCAAGAAAATCTCAATCTCACCCACAAACATGGAATTGGGTATCATCTCCCAAATGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDDEXK_6

Protein Analysis

224

Amino Acids

25.67

Weight (kDa)

6.13

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDDEXK_6	PF04720	25 - 203	4.4e-54	PDDEXK-like family of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77145 AT1G77145 AT1G77160 AT1G77160
malus_domestica	MD10G1016300.v1.1
prunus_persica	Prupe.8G020000_v2.0.a1 Prupe.8G020000_v2.0.a1 Prupe.8G020000_v2.0.a1
pyrus_communis	pycom05g00920
rosa_chinensis	RchiOBHm_Chr6g0277051
rosa_laevigata	RLG00000013341
rosa_multiflora	Rmu_sc0000206.1_g000008
rosa_roxburghii	Rroxscaffold_7G00191730
rosa_rugosa	Rorug06G0105900 Rorug06G0106000
rosa_samantha	Rh6AG215900 Rh6BG220500 Rh6CG223300 Rh6DG212900
rosa_wichuraiana	Rw6G018840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	579
AcuI	CTGAAG	3 cut(s)	42, 248, 504
AgsI	TTSAA	3 cut(s)	32, 53, 403
AluBI	AGCT	6 cut(s)	25, 418, 438, 448, 493, 524
AluI	AGCT	6 cut(s)	25, 418, 438, 448, 493, 524
Alw26I	GTCTC	1 cut(s)	117
AlwNI	CAGNNNCTG	1 cut(s)	71
ApeKI	GCWGC	1 cut(s)	524
AspS9I	GGNCC	1 cut(s)	193
AsuHPI	GGTGA	6 cut(s)	4, 49, 361, 385, 423, 624
AvaII	GGWCC	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	545
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	2 cut(s)	257, 436
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	2 cut(s)	197, 673
BfmI	CTRYAG	1 cut(s)	122
BisI	GCNGC	2 cut(s)	525, 579
BlpI	GCTNAGC	1 cut(s)	520
BlsI	GCNGC	2 cut(s)	526, 580
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	545
Bpu1102I	GCTNAGC	1 cut(s)	520
BpuEI	CTTGAG	2 cut(s)	353, 524
BsaJI	CCNNGG	2 cut(s)	15, 566
BseDI	CCNNGG	2 cut(s)	15, 566
BseGI	GGATG	1 cut(s)	268
BseMII	CTCAG	1 cut(s)	534
BseXI	GCAGC	1 cut(s)	511
BsgI	GTGCAG	1 cut(s)	510
BslFI	GGGAC	2 cut(s)	206, 493
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	2 cut(s)	206, 493
Bsp143I	GATC	1 cut(s)	148
Bsp1720I	GCTNAGC	1 cut(s)	520
Bsp19I	CCATGG	1 cut(s)	566
BspACI	CCGC	1 cut(s)	579
BspCNI	CTCAG	1 cut(s)	533
BspHI	TCATGA	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	194
BspQI	GCTCTTC	1 cut(s)	15
BssECI	CCNNGG	2 cut(s)	15, 566
BssMI	GATC	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	566
Bst6I	CTCTTC	1 cut(s)	15
BstC8I	GCNNGC	1 cut(s)	420
BstDEI	CTNAG	2 cut(s)	219, 520
BstDSI	CCRYGG	1 cut(s)	566
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	589
BstSFI	CTRYAG	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	511
BstV2I	GAAGAC	1 cut(s)	545
BstXI	CCANNNNNNTGG	1 cut(s)	643
BtgI	CCRYGG	1 cut(s)	566
BtsCI	GGATG	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	420
CaiI	CAGNNNCTG	1 cut(s)	71
CciI	TCATGA	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	193
CspCI	CAANNNNNGTGG	2 cut(s)	578, 613
CviAII	CATG	7 cut(s)	152, 294, 394, 557, 567, 586, 643
CviJI	RGCY	9 cut(s)	25, 275, 418, 438, 448, 493, 524, 578, 601
CviKI_1	RGCY	9 cut(s)	25, 275, 418, 438, 448, 493, 524, 578, 601
DdeI	CTNAG	2 cut(s)	219, 520
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	193
Eco57I	CTGAAG	3 cut(s)	42, 248, 504
EcoO109I	RGGNCCY	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	566
ErhI	CCWWGG	1 cut(s)	566
FaeI	CATG	7 cut(s)	155, 297, 397, 560, 570, 589, 646
FalI	AAGNNNNNCTT	4 cut(s)	264, 296, 477, 509
FaqI	GGGAC	2 cut(s)	206, 493
FatI	CATG	7 cut(s)	151, 293, 393, 556, 566, 585, 642
Fnu4HI	GCNGC	2 cut(s)	525, 579
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	2 cut(s)	525, 579
FspBI	CTAG	2 cut(s)	197, 673
GluI	GCNGC	2 cut(s)	525, 579
Hin1II	CATG	7 cut(s)	155, 297, 397, 560, 570, 589, 646
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	5 cut(s)	53, 62, 74, 208, 223
HphI	GGTGA	6 cut(s)	4, 49, 361, 385, 423, 624
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	2 cut(s)	61, 228
Hpy188III	TCNNGA	3 cut(s)	71, 152, 541
Hpy8I	GTNNAC	1 cut(s)	391
HpyAV	CCTTC	2 cut(s)	133, 346
HpyCH4V	TGCA	5 cut(s)	422, 527, 589, 615, 670
HpyF3I	CTNAG	2 cut(s)	219, 520
Hsp92II	CATG	7 cut(s)	155, 297, 397, 560, 570, 589, 646
Kzo9I	GATC	1 cut(s)	148
LguI	GCTCTTC	1 cut(s)	15
LpnPI	CCDG	5 cut(s)	11, 84, 110, 477, 497
Lsp1109I	GCAGC	1 cut(s)	511
MaeI	CTAG	2 cut(s)	197, 673
MaeIII	GTNAC	4 cut(s)	10, 37, 373, 405
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	8 cut(s)	32, 48, 75, 241, 294, 332, 497, 545
MluCI	AATT	4 cut(s)	180, 361, 410, 647
MlyI	GAGTC	2 cut(s)	68, 71
MnlI	CCTC	5 cut(s)	10, 108, 183, 286, 573
MseI	TTAA	2 cut(s)	309, 383
MslI	CAYNNNNRTG	2 cut(s)	156, 641
MspA1I	CMGCKG	1 cut(s)	524
NcoI	CCATGG	1 cut(s)	566
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	7 cut(s)	155, 297, 397, 560, 570, 589, 646
NlaIV	GGNNCC	1 cut(s)	194
NmuCI	GTSAC	4 cut(s)	10, 37, 373, 405
NspI	RCATGY	1 cut(s)	589
PagI	TCATGA	1 cut(s)	151
PciSI	GCTCTTC	1 cut(s)	15
PfeI	GAWTC	3 cut(s)	53, 208, 223
PflFI	GACNNNGTC	1 cut(s)	500
PkrI	GCNGC	2 cut(s)	526, 580
PleI	GAGTC	2 cut(s)	68, 70
PpsI	GAGTC	2 cut(s)	68, 70
PpuMI	RGGWCCY	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	194
PspPI	GGNCC	1 cut(s)	193
PspPPI	RGGWCCY	1 cut(s)	193
PstNI	CAGNNNCTG	1 cut(s)	71
PsyI	GACNNNGTC	1 cut(s)	500
PvuII	CAGCTG	1 cut(s)	524
RseI	CAYNNNNRTG	2 cut(s)	156, 641
SapI	GCTCTTC	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	309, 383
SatI	GCNGC	2 cut(s)	525, 579
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	1 cut(s)	193
SchI	GAGTC	2 cut(s)	68, 71
SfcI	CTRYAG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	193
SmiMI	CAYNNNNRTG	2 cut(s)	156, 641
SmlI	CTYRAG	2 cut(s)	368, 539
SmoI	CTYRAG	2 cut(s)	368, 539
Sse9I	AATT	4 cut(s)	180, 361, 410, 647
SsiI	CCGC	1 cut(s)	579
SspMI	CTAG	2 cut(s)	197, 673
StyI	CCWWGG	1 cut(s)	566
TasI	AATT	4 cut(s)	180, 361, 410, 647
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	3 cut(s)	53, 208, 223
Tru1I	TTAA	2 cut(s)	309, 383
Tru9I	TTAA	2 cut(s)	309, 383
TseFI	GTSAC	4 cut(s)	10, 37, 373, 405
TseI	GCWGC	1 cut(s)	524
Tsp45I	GTSAC	4 cut(s)	10, 37, 373, 405
TspDTI	ATGAA	7 cut(s)	37, 200, 263, 282, 285, 345, 545
Tth111I	GACNNNGTC	1 cut(s)	500
VpaK11BI	GGWCC	1 cut(s)	193
XceI	RCATGY	1 cut(s)	589
XspI	CTAG	2 cut(s)	197, 673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.