RLG00000013341

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0011152
Physical Location & Seq
Reverse (-)
30065696 .. 30066652
957 bp
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UTR
Exon/CDS
Intron
RLM00000013341

Sequence Viewer

Length: 675 bp
ATGGGAAGCGTCACTGAGGAAGAGCTGGTTCAAATGGTGACAGACTTCATTGAATCTTCAGAGTCAGTTCCTGACTCATTATCTTCTCCCAATTCCCCTCGTCAATCCAAGTCTCTAACTCTACAGGAGATAATATGGAAGGCAACAGATCATGAGAATGAGATACTTGACAAAATATCAATGTATTTGAGGGACATAGAGGGTATGATTGATCAACCTAAGAATCTGAAGAACAAATGGGTTGTGATGAAACTGAAAATGGATGGTTATGAAGCCTCTCTTTGTAAAACTTCATGGGTTTCTTCTGTTAAACTCCCCGAAGATGACTATGAATATGTTGATGTTATGATGAAGGACAACAATTTACTCAAGGTGACAAGGTTAATAGTGGACATGGATTTCAAGTCACAATTTGAGCTTGCAAGACCATCACCAAGCTACAAAGAGCTGAAAGACATTTTGCCAGACATTTTTGTTGGGACTGAAGAAAAGCTTGACAAAGTCATATCTCTGGTTTGCTCAGCTGCAAAGAAATCTCTCAAGAAAATGGGTCTTCATGTTCCTCCATGGAGAAAAGCCACCTACATGCAATCCAAGTGGCTCTCCAAAGATTGCAAGAAAATCTCAATCTCACCCATAAACGTGGAATTGGGTATCATCTCCCAAATGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

225

Amino Acids

25.67

Weight (kDa)

5.75

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 25 - 203 7.1e-55 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 3 cut(s) 42, 248, 504
AgsI TTSAA 3 cut(s) 32, 53, 403
AluBI AGCT 6 cut(s) 25, 418, 438, 448, 493, 524
AluI AGCT 6 cut(s) 25, 418, 438, 448, 493, 524
Alw26I GTCTC 1 cut(s) 117
AlwNI CAGNNNCTG 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 524
AsuHPI GGTGA 4 cut(s) 49, 385, 423, 624
BbsI GAAGAC 1 cut(s) 545
BbvI GCAGC 1 cut(s) 511
BccI CCATC 2 cut(s) 257, 436
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 1 cut(s) 673
BfmI CTRYAG 1 cut(s) 122
BisI GCNGC 1 cut(s) 525
BlpI GCTNAGC 1 cut(s) 520
BlsI GCNGC 1 cut(s) 526
BpiI GAAGAC 1 cut(s) 545
Bpu1102I GCTNAGC 1 cut(s) 520
BpuEI CTTGAG 2 cut(s) 353, 524
BsaJI CCNNGG 1 cut(s) 566
BseDI CCNNGG 1 cut(s) 566
BseGI GGATG 1 cut(s) 268
BseMII CTCAG 2 cut(s) 6, 534
BseXI GCAGC 1 cut(s) 511
BslFI GGGAC 2 cut(s) 206, 493
BsmAI GTCTC 1 cut(s) 117
BsmFI GGGAC 2 cut(s) 206, 493
Bsp143I GATC 2 cut(s) 148, 211
Bsp1720I GCTNAGC 1 cut(s) 520
Bsp19I CCATGG 1 cut(s) 566
BspCNI CTCAG 2 cut(s) 7, 533
BspHI TCATGA 1 cut(s) 151
BspQI GCTCTTC 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 566
BssMI GATC 2 cut(s) 148, 211
BssT1I CCWWGG 1 cut(s) 566
Bst6I CTCTTC 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 3 cut(s) 15, 219, 520
BstDSI CCRYGG 1 cut(s) 566
BstF5I GGATG 1 cut(s) 268
BstKTI GATC 2 cut(s) 151, 214
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 2 cut(s) 148, 211
BstNSI RCATGY 1 cut(s) 589
BstSFI CTRYAG 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 511
BstV2I GAAGAC 1 cut(s) 545
BstXI CCANNNNNNTGG 1 cut(s) 643
BtgI CCRYGG 1 cut(s) 566
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 420
CaiI CAGNNNCTG 1 cut(s) 71
CciI TCATGA 1 cut(s) 151
CspCI CAANNNNNGTGG 2 cut(s) 578, 613
CviAII CATG 6 cut(s) 152, 294, 394, 557, 567, 586
CviJI RGCY 9 cut(s) 25, 275, 418, 438, 448, 493, 524, 578, 601
CviKI_1 RGCY 9 cut(s) 25, 275, 418, 438, 448, 493, 524, 578, 601
DdeI CTNAG 3 cut(s) 15, 219, 520
DpnI GATC 2 cut(s) 150, 213
DpnII GATC 2 cut(s) 148, 211
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 566
Eco57I CTGAAG 3 cut(s) 42, 248, 504
EcoT14I CCWWGG 1 cut(s) 566
ErhI CCWWGG 1 cut(s) 566
FaeI CATG 6 cut(s) 155, 297, 397, 560, 570, 589
FalI AAGNNNNNCTT 4 cut(s) 264, 296, 477, 509
FaqI GGGAC 2 cut(s) 206, 493
FatI CATG 6 cut(s) 151, 293, 393, 556, 566, 585
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 525
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 1 cut(s) 525
FspBI CTAG 1 cut(s) 673
GluI GCNGC 1 cut(s) 525
Hin1II CATG 6 cut(s) 155, 297, 397, 560, 570, 589
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 4 cut(s) 53, 62, 74, 223
HphI GGTGA 4 cut(s) 49, 385, 423, 624
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 2 cut(s) 61, 228
Hpy188III TCNNGA 3 cut(s) 71, 152, 541
Hpy8I GTNNAC 1 cut(s) 391
HpyAV CCTTC 2 cut(s) 133, 346
HpyCH4IV ACGT 1 cut(s) 642
HpyCH4V TGCA 5 cut(s) 422, 527, 589, 615, 670
HpyF3I CTNAG 3 cut(s) 15, 219, 520
HpySE526I ACGT 1 cut(s) 642
Hsp92II CATG 6 cut(s) 155, 297, 397, 560, 570, 589
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 2 cut(s) 148, 211
LguI GCTCTTC 1 cut(s) 15
LpnPI CCDG 5 cut(s) 11, 84, 110, 477, 497
Lsp1109I GCAGC 1 cut(s) 511
MaeI CTAG 1 cut(s) 673
MaeII ACGT 1 cut(s) 642
MaeIII GTNAC 4 cut(s) 10, 37, 373, 405
MalI GATC 2 cut(s) 150, 213
MboI GATC 2 cut(s) 148, 211
MboII GAAGA 8 cut(s) 32, 48, 75, 241, 294, 332, 497, 545
MluCI AATT 4 cut(s) 91, 361, 410, 647
MlyI GAGTC 2 cut(s) 68, 71
MnlI CCTC 6 cut(s) 10, 108, 183, 193, 286, 573
MseI TTAA 2 cut(s) 309, 383
MslI CAYNNNNRTG 3 cut(s) 156, 584, 641
MspA1I CMGCKG 1 cut(s) 524
NcoI CCATGG 1 cut(s) 566
NdeII GATC 2 cut(s) 148, 211
NlaIII CATG 6 cut(s) 155, 297, 397, 560, 570, 589
NmuCI GTSAC 4 cut(s) 10, 37, 373, 405
NspI RCATGY 1 cut(s) 589
PagI TCATGA 1 cut(s) 151
PciSI GCTCTTC 1 cut(s) 15
PfeI GAWTC 2 cut(s) 53, 223
PflFI GACNNNGTC 1 cut(s) 500
PkrI GCNGC 1 cut(s) 526
PleI GAGTC 2 cut(s) 68, 70
PpsI GAGTC 2 cut(s) 68, 70
PstNI CAGNNNCTG 1 cut(s) 71
PsyI GACNNNGTC 1 cut(s) 500
PvuII CAGCTG 1 cut(s) 524
RseI CAYNNNNRTG 3 cut(s) 156, 584, 641
SapI GCTCTTC 1 cut(s) 15
SaqAI TTAA 2 cut(s) 309, 383
SatI GCNGC 1 cut(s) 525
Sau3AI GATC 2 cut(s) 148, 211
SchI GAGTC 2 cut(s) 68, 71
SfcI CTRYAG 1 cut(s) 122
SmiMI CAYNNNNRTG 3 cut(s) 156, 584, 641
SmlI CTYRAG 2 cut(s) 368, 539
SmoI CTYRAG 2 cut(s) 368, 539
Sse9I AATT 4 cut(s) 91, 361, 410, 647
SspMI CTAG 1 cut(s) 673
StyI CCWWGG 1 cut(s) 566
TaiI ACGT 1 cut(s) 645
TasI AATT 4 cut(s) 91, 361, 410, 647
TfiI GAWTC 2 cut(s) 53, 223
Tru1I TTAA 2 cut(s) 309, 383
Tru9I TTAA 2 cut(s) 309, 383
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 4 cut(s) 10, 37, 373, 405
TseI GCWGC 1 cut(s) 524
Tsp45I GTSAC 4 cut(s) 10, 37, 373, 405
TspDTI ATGAA 7 cut(s) 37, 263, 282, 285, 345, 365, 545
TspRI CASTG 1 cut(s) 19
Tth111I GACNNNGTC 1 cut(s) 500
XceI RCATGY 1 cut(s) 589
XspI CTAG 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.