AT1G77700

Thaumatin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011929
Physical Location & Seq
Forward (+)
29204747 .. 29206511
1765 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G77700.1

Sequence Viewer

Length: 1071 bp
ATGGACCGAACAATTGAGATTGAGTTCGACATAAATGGGCCATATGATTCATTAATTAGGCCTAATATATCAGTAGCCAGTCTCACTTCAAGATCAGAAAATAACATTACATTTGATCCTAAAATATTTTCTAGTAAAGATGCCAATTCGTTTCGGTTTGTCACCAAGGATCTTGTTACTCTTTCTCACCATATTATCAGGGTTTGGATAACGATTAGAACTCCTGTGAATTACTCCACAGGAACAAAATGGTCAGAATCAGCTCGAGTATTCACGATCATAAACTCATGTGACCAAACGATCTGGCCGGCGATAACTCCAGGAGAAAACTTCAACGGAGGAGGATTCGAGCTCAAACCGGGCCAATCCATCGTATTCCACGCACCAGTAGGCTGGTCAGGCAGAATTTGGGGACGAACCGGTTGTAAATTCGACTCAACCGGAACCGGAACATGCGAAACCGGTTCATGCGGATCAACTCTAAAATGTTCAGCCTCCGGAAAACCACCAGCTTCACTAGCTGAATTCACATTAGCCGCATTGGATTTCTACGACGTGAGCCTCGTCGACGGATTCAATCTCCCGATGTCGGTGACTCCGATGAACGGAAAAGGAAACTGCAGCGTCGCCGGTTGCGTAGCTGATTTGAGGCCACATTGTCCGCAGGAGCTCGCAGTGAAATCAAACGGGAAAGTCATATCGTGTAGGAGTGCTTGTGATGTGTTTGATAGAGATGAGTATTGTTGTAGAGGAGTTTATGGGAACCCAGTTGTGTGTCAACCAACTTATTACTCAAAGATCTTTAAACAAGCTTGTCCTACTGCTTATAGTTATGCTTATGATGATCCGACCAGTATTATGACTTGCACTGCCTCTGATTACGTCATTTCTTTCTGTTCCTCCAGGTTTGTCCTTTTTACGTTTTTAACAACATCTCATGATTACTTTAATTATGATTCTAATCAAGTTTCATTCATACTAGACCATGACTTTTACATTTACATGATATACTTTATTCATCCTTTGTTAATTTCATATGCAAAAGTAAAAGTAATTCAAATGCAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

356

Amino Acids

39.54

Weight (kDa)

6.37

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 95 - 300 3.8e-79 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77700 AT1G77700 AT1G77700
fragaria_vesca FvH4_2g26400
malus_domestica MD08G1169300.v1.1 MD15G1355700.v1.1 MD15G1355800.v1.1
prunus_persica Prupe.1G503200_v2.0.a1
pyrus_communis pycom08g14470 pycom15g31790
rosa_chinensis RchiOBHm_Chr6g0294961
rosa_laevigata RLG00000011825
rosa_roxburghii Rroxscaffold_7G00172790
rosa_rugosa Rorug06G0248900
rosa_samantha Rh6AG361900 Rh6BG369400 Rh6CG375900 Rh6DG362500
rosa_wichuraiana Rw6G031580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 567
AccIII TCCGGA 1 cut(s) 497
AciI CCGC 3 cut(s) 471, 537, 662
AclWI GGATC 4 cut(s) 110, 177, 481, 839
AcoI YGGCCR 1 cut(s) 305
AcsI RAATTY 3 cut(s) 405, 428, 524
AfiI CCNNNNNNNGG 2 cut(s) 589, 605
AgeI ACCGGT 2 cut(s) 419, 461
AgsI TTSAA 4 cut(s) 90, 334, 577, 1058
AjiI CACGTC 1 cut(s) 556
AjnI CCWGG 2 cut(s) 319, 902
AluBI AGCT 7 cut(s) 263, 352, 512, 521, 641, 670, 812
AluI AGCT 7 cut(s) 263, 352, 512, 521, 641, 670, 812
Alw21I GWGCWC 2 cut(s) 354, 672
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 4 cut(s) 110, 177, 481, 839
Ama87I CYCGRG 1 cut(s) 264
Aor13HI TCCGGA 1 cut(s) 497
AoxI GGCC 5 cut(s) 38, 59, 305, 361, 650
ApeKI GCWGC 1 cut(s) 621
ApoI RAATTY 3 cut(s) 405, 428, 524
AseI ATTAAT 1 cut(s) 53
AsiGI ACCGGT 2 cut(s) 419, 461
AspS9I GGNCC 3 cut(s) 4, 38, 361
AsuC2I CCSGG 1 cut(s) 360
AsuHPI GGTGA 3 cut(s) 154, 179, 604
AvaI CYCGRG 1 cut(s) 264
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 354, 672
Bbv12I GWGCWC 2 cut(s) 354, 672
BbvI GCAGC 1 cut(s) 633
BccI CCATC 1 cut(s) 377
BciT130I CCWGG 2 cut(s) 321, 904
BcnI CCSGG 1 cut(s) 360
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 3 cut(s) 132, 518, 980
BfmI CTRYAG 1 cut(s) 619
BglII AGATCT 1 cut(s) 798
BisI GCNGC 2 cut(s) 537, 622
BlsI GCNGC 2 cut(s) 538, 623
Bme1390I CCNGG 3 cut(s) 321, 360, 904
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 264
BmgBI CACGTC 1 cut(s) 556
BmgT120I GGNCC 3 cut(s) 4, 38, 361
BmiI GGNNCC 2 cut(s) 445, 764
BmrFI CCNGG 3 cut(s) 321, 360, 904
BmrI ACTGGG 1 cut(s) 761
BmsI GCATC 1 cut(s) 130
BmuI ACTGGG 1 cut(s) 761
BpmI CTGGAG 2 cut(s) 303, 886
BpuMI CCSGG 1 cut(s) 360
BsaBI GATNNNNATC 1 cut(s) 960
BsaJI CCNNGG 1 cut(s) 165
BsaWI WCCGGW 5 cut(s) 419, 440, 446, 461, 497
BsaXI ACNNNNNCTCC 2 cut(s) 700, 730
Bsc4I CCNNNNNNNGG 2 cut(s) 589, 605
Bse118I RCCGGY 4 cut(s) 307, 419, 461, 629
Bse1I ACTGG 4 cut(s) 78, 386, 767, 852
Bse8I GATNNNNATC 1 cut(s) 960
BseAI TCCGGA 1 cut(s) 497
BseBI CCWGG 2 cut(s) 321, 904
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 1 cut(s) 1018
BseJI GATNNNNATC 1 cut(s) 960
BseLI CCNNNNNNNGG 2 cut(s) 589, 605
BseNI ACTGG 4 cut(s) 78, 386, 767, 852
BseRI GAGGAG 2 cut(s) 354, 765
BseXI GCAGC 1 cut(s) 633
BshFI GGCC 5 cut(s) 40, 61, 307, 363, 652
BshTI ACCGGT 2 cut(s) 419, 461
BsiHKAI GWGCWC 2 cut(s) 354, 672
BsiHKCI CYCGRG 1 cut(s) 264
BsiSI CCGG 8 cut(s) 308, 359, 420, 441, 447, 462, 498, 630
BslFI GGGAC 1 cut(s) 426
BslI CCNNNNNNNGG 2 cut(s) 589, 605
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 426
BsnI GGCC 5 cut(s) 40, 61, 307, 363, 652
BsoBI CYCGRG 1 cut(s) 264
Bsp1286I GDGCHC 2 cut(s) 354, 672
Bsp13I TCCGGA 1 cut(s) 497
Bsp143I GATC 8 cut(s) 92, 115, 169, 276, 300, 473, 798, 844
BspACI CCGC 3 cut(s) 471, 537, 662
BspANI GGCC 5 cut(s) 40, 61, 307, 363, 652
BspEI TCCGGA 1 cut(s) 497
BspHI TCATGA 1 cut(s) 937
BspLI GGNNCC 2 cut(s) 445, 764
BspMAI CTGCAG 1 cut(s) 623
BspPI GGATC 4 cut(s) 110, 177, 481, 839
BsrFI RCCGGY 4 cut(s) 307, 419, 461, 629
BsrI ACTGG 4 cut(s) 78, 386, 767, 852
BssAI RCCGGY 4 cut(s) 307, 419, 461, 629
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 8 cut(s) 92, 115, 169, 276, 300, 473, 798, 844
BssT1I CCWWGG 1 cut(s) 165
Bst2UI CCWGG 2 cut(s) 321, 904
BstC8I GCNNGC 2 cut(s) 309, 672
BstF5I GGATG 1 cut(s) 1018
BstKTI GATC 8 cut(s) 95, 118, 172, 279, 303, 476, 801, 847
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 8 cut(s) 92, 115, 169, 276, 300, 473, 798, 844
BstMWI GCNNNNNNNGC 2 cut(s) 399, 518
BstNI CCWGG 2 cut(s) 321, 904
BstNSI RCATGY 1 cut(s) 456
BstSCI CCNGG 3 cut(s) 319, 358, 902
BstSFI CTRYAG 1 cut(s) 619
BstV1I GCAGC 1 cut(s) 633
BstX2I RGATCY 2 cut(s) 169, 798
BstXI CCANNNNNNTGG 1 cut(s) 393
BstYI RGATCY 2 cut(s) 169, 798
BsuRI GGCC 5 cut(s) 40, 61, 307, 363, 652
BtrI CACGTC 1 cut(s) 556
BtsCI GGATG 1 cut(s) 1018
BtsI GCAGTG 2 cut(s) 681, 867
BtsIMutI CAGTG 2 cut(s) 681, 867
Cac8I GCNNGC 2 cut(s) 309, 672
CciI TCATGA 1 cut(s) 937
Cfr10I RCCGGY 4 cut(s) 307, 419, 461, 629
Cfr13I GGNCC 3 cut(s) 4, 38, 361
CseI GACGC 1 cut(s) 613
CspAI ACCGGT 2 cut(s) 419, 461
CviAII CATG 6 cut(s) 288, 453, 468, 938, 986, 1003
DpnI GATC 8 cut(s) 94, 117, 171, 278, 302, 475, 800, 846
DpnII GATC 8 cut(s) 92, 115, 169, 276, 300, 473, 798, 844
DraI TTTAAA 1 cut(s) 805
EaeI YGGCCR 1 cut(s) 305
Ecl136II GAGCTC 2 cut(s) 352, 670
Eco130I CCWWGG 1 cut(s) 165
Eco147I AGGCCT 1 cut(s) 61
Eco24I GRGCYC 2 cut(s) 354, 672
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 2 cut(s) 352, 670
Eco88I CYCGRG 1 cut(s) 264
EcoICRI GAGCTC 2 cut(s) 352, 670
EcoRI GAATTC 1 cut(s) 524
EcoRII CCWGG 2 cut(s) 319, 902
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 2 cut(s) 354, 672
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 6 cut(s) 291, 456, 471, 941, 989, 1006
FaqI GGGAC 1 cut(s) 426
FatI CATG 6 cut(s) 287, 452, 467, 937, 985, 1002
FauNDI CATATG 2 cut(s) 43, 1036
FblI GTMKAC 1 cut(s) 567
Fnu4HI GCNGC 2 cut(s) 537, 622
FokI GGATG 1 cut(s) 1005
FriOI GRGCYC 2 cut(s) 354, 672
Fsp4HI GCNGC 2 cut(s) 537, 622
FspBI CTAG 3 cut(s) 132, 518, 980
GluI GCNGC 2 cut(s) 537, 622
GsuI CTGGAG 2 cut(s) 303, 886
HaeIII GGCC 5 cut(s) 40, 61, 307, 363, 652
HapII CCGG 8 cut(s) 308, 359, 420, 441, 447, 462, 498, 630
HgaI GACGC 1 cut(s) 613
Hin1II CATG 6 cut(s) 291, 456, 471, 941, 989, 1006
HincII GTYRAC 2 cut(s) 568, 779
HindII GTYRAC 2 cut(s) 568, 779
HindIII AAGCTT 1 cut(s) 810
HinfI GANTC 7 cut(s) 47, 257, 345, 434, 573, 595, 956
HpaII CCGG 8 cut(s) 308, 359, 420, 441, 447, 462, 498, 630
HphI GGTGA 3 cut(s) 154, 179, 604
Hpy166II GTNNAC 2 cut(s) 568, 779
Hpy188I TCNGA 5 cut(s) 97, 256, 600, 849, 877
Hpy188III TCNNGA 5 cut(s) 90, 274, 498, 583, 938
Hpy8I GTNNAC 2 cut(s) 568, 779
Hpy99I CGWCG 4 cut(s) 557, 569, 572, 629
HpyCH4IV ACGT 3 cut(s) 555, 882, 920
HpyCH4V TGCA 4 cut(s) 621, 867, 1040, 1063
HpyF10VI GCNNNNNNNGC 2 cut(s) 399, 518
HpySE526I ACGT 3 cut(s) 555, 882, 920
Hsp92II CATG 6 cut(s) 291, 456, 471, 941, 989, 1006
Kpn2I TCCGGA 1 cut(s) 497
KroI GCCGGC 1 cut(s) 307
KroNI GCCGGC 1 cut(s) 309
Kzo9I GATC 8 cut(s) 92, 115, 169, 276, 300, 473, 798, 844
LmnI GCTCC 1 cut(s) 667
Lsp1109I GCAGC 1 cut(s) 633
LweI GCATC 1 cut(s) 130
MaeI CTAG 3 cut(s) 132, 518, 980
MaeII ACGT 3 cut(s) 555, 882, 920
MaeIII GTNAC 4 cut(s) 160, 175, 290, 592
MalI GATC 8 cut(s) 94, 117, 171, 278, 302, 475, 800, 846
MboI GATC 8 cut(s) 92, 115, 169, 276, 300, 473, 798, 844
MfeI CAATTG 1 cut(s) 12
MflI RGATCY 2 cut(s) 169, 798
MhlI GDGCHC 2 cut(s) 354, 672
MlyI GAGTC 2 cut(s) 428, 589
MmeI TCCRAC 1 cut(s) 872
MnlI CCTC 8 cut(s) 332, 335, 505, 572, 642, 743, 883, 910
MroI TCCGGA 1 cut(s) 497
MroNI GCCGGC 1 cut(s) 307
MseI TTAA 5 cut(s) 53, 804, 926, 948, 1028
MslI CAYNNNNRTG 1 cut(s) 1001
MspI CCGG 8 cut(s) 308, 359, 420, 441, 447, 462, 498, 630
MspR9I CCNGG 3 cut(s) 321, 360, 904
MunI CAATTG 1 cut(s) 12
MvaI CCWGG 2 cut(s) 321, 904
MwoI GCNNNNNNNGC 2 cut(s) 399, 518
NaeI GCCGGC 1 cut(s) 309
NciI CCSGG 1 cut(s) 360
NdeI CATATG 2 cut(s) 43, 1036
NdeII GATC 8 cut(s) 92, 115, 169, 276, 300, 473, 798, 844
NgoMIV GCCGGC 1 cut(s) 307
NlaIII CATG 6 cut(s) 291, 456, 471, 941, 989, 1006
NlaIV GGNNCC 2 cut(s) 445, 764
NmuCI GTSAC 3 cut(s) 160, 290, 592
NspI RCATGY 1 cut(s) 456
PaeR7I CTCGAG 1 cut(s) 264
PagI TCATGA 1 cut(s) 937
PceI AGGCCT 1 cut(s) 61
PcsI WCGNNNNNNNCGW 3 cut(s) 561, 596, 633
PdiI GCCGGC 1 cut(s) 309
PfeI GAWTC 5 cut(s) 47, 257, 345, 573, 956
PfoI TCCNGGA 1 cut(s) 319
PinAI ACCGGT 2 cut(s) 419, 461
PkrI GCNGC 2 cut(s) 538, 623
PleI GAGTC 2 cut(s) 428, 589
PpsI GAGTC 2 cut(s) 428, 589
PshBI ATTAAT 1 cut(s) 53
Psp124BI GAGCTC 2 cut(s) 354, 672
Psp6I CCWGG 2 cut(s) 319, 902
PspGI CCWGG 2 cut(s) 319, 902
PspN4I GGNNCC 2 cut(s) 445, 764
PspPI GGNCC 3 cut(s) 4, 38, 361
PspXI VCTCGAGB 1 cut(s) 264
PstI CTGCAG 1 cut(s) 623
PsuI RGATCY 2 cut(s) 169, 798
RseI CAYNNNNRTG 1 cut(s) 1001
SacI GAGCTC 2 cut(s) 354, 672
SalI GTCGAC 1 cut(s) 566
SaqAI TTAA 5 cut(s) 53, 804, 926, 948, 1028
SatI GCNGC 2 cut(s) 537, 622
Sau3AI GATC 8 cut(s) 92, 115, 169, 276, 300, 473, 798, 844
Sau96I GGNCC 3 cut(s) 4, 38, 361
SchI GAGTC 2 cut(s) 428, 589
ScrFI CCNGG 3 cut(s) 321, 360, 904
SduI GDGCHC 2 cut(s) 354, 672
SfaNI GCATC 1 cut(s) 130
SfcI CTRYAG 1 cut(s) 619
Sfr274I CTCGAG 1 cut(s) 264
SgrDI CGTCGACG 1 cut(s) 566
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 1 cut(s) 264
SmiMI CAYNNNNRTG 1 cut(s) 1001
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
SseBI AGGCCT 1 cut(s) 61
SsiI CCGC 3 cut(s) 471, 537, 662
SspI AATATT 1 cut(s) 126
SspMI CTAG 3 cut(s) 132, 518, 980
SstI GAGCTC 2 cut(s) 354, 672
StuI AGGCCT 1 cut(s) 61
StyD4I CCNGG 3 cut(s) 319, 358, 902
StyI CCWWGG 1 cut(s) 165
TaiI ACGT 3 cut(s) 558, 885, 923
TaqI TCGA 5 cut(s) 27, 265, 348, 432, 567
TaqII GACCGA 1 cut(s) 21
TauI GCSGC 1 cut(s) 539
TfiI GAWTC 5 cut(s) 47, 257, 345, 573, 956
Tru1I TTAA 5 cut(s) 53, 804, 926, 948, 1028
Tru9I TTAA 5 cut(s) 53, 804, 926, 948, 1028
TscAI CASTG 2 cut(s) 681, 874
TseFI GTSAC 3 cut(s) 160, 290, 592
TseI GCWGC 1 cut(s) 621
Tsp45I GTSAC 3 cut(s) 160, 290, 592
TspDTI ATGAA 7 cut(s) 39, 456, 617, 960, 964, 1007, 1023
TspGWI ACGGA 3 cut(s) 351, 585, 621
TspRI CASTG 2 cut(s) 681, 874
VpaK11BI GGWCC 1 cut(s) 4
VspI ATTAAT 1 cut(s) 53
XapI RAATTY 3 cut(s) 405, 428, 524
XceI RCATGY 1 cut(s) 456
XhoI CTCGAG 1 cut(s) 264
XmiI GTMKAC 1 cut(s) 567
XspI CTAG 3 cut(s) 132, 518, 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.