Rh6DG362500

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0011929
Physical Location & Seq
Reverse (-)
55970597 .. 55971932
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG362500.1

Sequence Viewer

Length: 861 bp
ATGGCAACAGAATTCAAAGTGTTCTGGTTACCGGTTTTATTGGTTTCTATGATCATTGTTTCATCAGGACCCAAGTTGTCCGAGTCTGCTAGAATTTTCACCATTATAAACAATTGCAAAGAGACAATCTGGCCTGCAGTATTTCCTGGGGAGAACTTCAACGGTGGTGGCTTTCCACTAAAATCAGGCCAGTCCGTTGTATTCACAGCTCCGGTTAGCTGGTCTGGCCGGATATGGGGTCGTACCGGCTGCAACTTTGACAAAAATGGCAATGGAACATGCCAGACTGGGGCATGTGGCACCAGCCTCAAGTGTGGAGGCTCAGGAAACACCCCAGCATCACTTGCTGAATTTACACTTGCGCAGCCAGATTTTTATGATGTTAGTCTTGTTGATGGGTTTAACTTGCCATTAACTGTCACACCTGTTAATGGTTCGGGAAATTGCAGTGCTTCTGGTTGTGATGGGGACCTGAGGACTACTTGCCCGAATGAGTTGGCTCTGAAATCAAATGGGAAGACTGTTGGTTGCCGCAGCGCCTGCGATGTGTACAACACTGATGAGTATTGTTGCAGAGGGGTATATGGAAACGCTGCTGTATGTAAACCCACATATTATTCCAAGAAGTTCAAAGAAGCATGCCCTACTGCATATAGTTACGCGTATGATGATCCATCCAGTATTTTCACTTGCTCAGGCACTGATTATATCATCGCATTCTGCTCATCCAGGAAGCAACCGGTATGTACATATCATAACAACAAGCTTGTCTGCAGTGGATCAATTGGTTTAAAGTCATCGAGATTGTGGGCGACGATGCTTGTACTGCTACTGTTGATTAACTTATGGATAATTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

286

Amino Acids

30.72

Weight (kDa)

8.23

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 37 - 242 5.8e-77 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77700 AT1G77700 AT1G77700
fragaria_vesca FvH4_2g26400
malus_domestica MD08G1169300.v1.1 MD15G1355700.v1.1 MD15G1355800.v1.1
prunus_persica Prupe.1G503200_v2.0.a1
pyrus_communis pycom08g14470 pycom15g31790
rosa_chinensis RchiOBHm_Chr6g0294961
rosa_laevigata RLG00000011825
rosa_roxburghii Rroxscaffold_7G00172790
rosa_rugosa Rorug06G0248900
rosa_samantha Rh6AG361900 Rh6BG369400 Rh6CG375900 Rh6DG362500
rosa_wichuraiana Rw6G031580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 107
Acc16I TGCGCA 1 cut(s) 363
AccB1I GGYRCC 1 cut(s) 299
AccII CGCG 1 cut(s) 662
AciI CCGC 1 cut(s) 532
AclWI GGATC 2 cut(s) 665, 787
AcoI YGGCCR 1 cut(s) 226
AcsI RAATTY 3 cut(s) 11, 93, 350
AfaI GTAC 4 cut(s) 244, 551, 748, 825
AfiI CCNNNNNNNGG 3 cut(s) 235, 289, 431
AflIII ACRYGT 1 cut(s) 660
AgeI ACCGGT 2 cut(s) 31, 739
AgsI TTSAA 3 cut(s) 16, 160, 631
AjnI CCWGG 2 cut(s) 145, 728
AluBI AGCT 3 cut(s) 209, 219, 766
AluI AGCT 3 cut(s) 209, 219, 766
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 2 cut(s) 665, 787
AlwNI CAGNNNCTG 2 cut(s) 540, 701
AoxI GGCC 3 cut(s) 131, 187, 226
ApeKI GCWGC 4 cut(s) 249, 364, 534, 593
ApoI RAATTY 3 cut(s) 11, 93, 350
AsiGI ACCGGT 2 cut(s) 31, 739
AspLEI GCGC 2 cut(s) 364, 539
AspS9I GGNCC 2 cut(s) 68, 469
AsuHPI GGTGA 1 cut(s) 91
AvaII GGWCC 2 cut(s) 68, 469
AxyI CCTNAGG 1 cut(s) 473
BanI GGYRCC 1 cut(s) 299
BbsI GAAGAC 1 cut(s) 524
BbvI GCAGC 4 cut(s) 236, 376, 546, 580
BccI CCATC 3 cut(s) 389, 458, 682
BciT130I CCWGG 2 cut(s) 147, 730
BclI TGATCA 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 1 cut(s) 90
BfmI CTRYAG 2 cut(s) 135, 772
BfoI RGCGCY 1 cut(s) 540
BisI GCNGC 5 cut(s) 250, 365, 532, 535, 594
BlsI GCNGC 5 cut(s) 251, 366, 533, 536, 595
Bme1390I CCNGG 2 cut(s) 147, 730
Bme18I GGWCC 2 cut(s) 68, 469
BmgT120I GGNCC 2 cut(s) 68, 469
BmiI GGNNCC 3 cut(s) 70, 301, 470
BmrFI CCNGG 2 cut(s) 147, 730
BmrI ACTGGG 1 cut(s) 297
BmsI GCATC 2 cut(s) 347, 807
BmuI ACTGGG 1 cut(s) 297
BpiI GAAGAC 1 cut(s) 524
Bpu10I CCTNAGC 2 cut(s) 322, 694
BpuEI CTTGAG 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 146
BsaWI WCCGGW 3 cut(s) 31, 211, 739
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 289, 431
Bse118I RCCGGY 3 cut(s) 31, 245, 739
Bse1I ACTGG 3 cut(s) 190, 292, 678
Bse21I CCTNAGG 1 cut(s) 473
Bse3DI GCAATG 1 cut(s) 277
BseBI CCWGG 2 cut(s) 147, 730
BseDI CCNNGG 1 cut(s) 146
BseGI GGATG 2 cut(s) 674, 725
BseLI CCNNNNNNNGG 3 cut(s) 235, 289, 431
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 3 cut(s) 336, 464, 708
BseNI ACTGG 3 cut(s) 190, 292, 678
BseXI GCAGC 4 cut(s) 236, 376, 546, 580
BseYI CCCAGC 1 cut(s) 334
Bsh1236I CGCG 1 cut(s) 662
BshFI GGCC 3 cut(s) 133, 189, 228
BshNI GGYRCC 1 cut(s) 299
BshTI ACCGGT 2 cut(s) 31, 739
BsiSI CCGG 5 cut(s) 32, 212, 229, 246, 740
BslFI GGGAC 1 cut(s) 482
BslI CCNNNNNNNGG 3 cut(s) 235, 289, 431
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 482
BsmI GAATGC 1 cut(s) 716
BsnI GGCC 3 cut(s) 133, 189, 228
Bsp1407I TGTACA 2 cut(s) 549, 746
Bsp143I GATC 3 cut(s) 51, 670, 779
BspACI CCGC 1 cut(s) 532
BspANI GGCC 3 cut(s) 133, 189, 228
BspCNI CTCAG 3 cut(s) 335, 465, 707
BspFNI CGCG 1 cut(s) 662
BspLI GGNNCC 3 cut(s) 70, 301, 470
BspMAI CTGCAG 2 cut(s) 139, 776
BspPI GGATC 2 cut(s) 665, 787
BspT107I GGYRCC 1 cut(s) 299
BsrDI GCAATG 1 cut(s) 277
BsrFI RCCGGY 3 cut(s) 31, 245, 739
BsrGI TGTACA 2 cut(s) 549, 746
BsrI ACTGG 3 cut(s) 190, 292, 678
BssAI RCCGGY 3 cut(s) 31, 245, 739
BssECI CCNNGG 1 cut(s) 146
BssMI GATC 3 cut(s) 51, 670, 779
Bst2UI CCWGG 2 cut(s) 147, 730
Bst4CI ACNGT 4 cut(s) 164, 418, 523, 834
BstAPI GCANNNNNTGC 2 cut(s) 344, 540
BstAUI TGTACA 2 cut(s) 549, 746
BstC8I GCNNGC 3 cut(s) 135, 541, 640
BstDEI CTNAG 3 cut(s) 322, 473, 694
BstEII GGTNACC 1 cut(s) 27
BstF5I GGATG 2 cut(s) 674, 725
BstFNI CGCG 1 cut(s) 662
BstH2I RGCGCY 1 cut(s) 540
BstHHI GCGC 2 cut(s) 364, 539
BstKTI GATC 3 cut(s) 54, 673, 782
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 3 cut(s) 51, 670, 779
BstMWI GCNNNNNNNGC 4 cut(s) 225, 344, 540, 826
BstNI CCWGG 2 cut(s) 147, 730
BstNSI RCATGY 3 cut(s) 282, 297, 642
BstPI GGTNACC 1 cut(s) 27
BstSCI CCNGG 2 cut(s) 145, 728
BstSFI CTRYAG 2 cut(s) 135, 772
BstUI CGCG 1 cut(s) 662
BstV1I GCAGC 4 cut(s) 236, 376, 546, 580
BstV2I GAAGAC 1 cut(s) 524
Bsu36I CCTNAGG 1 cut(s) 473
BsuRI GGCC 3 cut(s) 133, 189, 228
BtgZI GCGATG 2 cut(s) 558, 697
BtsCI GGATG 2 cut(s) 674, 725
BtsI GCAGTG 2 cut(s) 454, 781
BtsIMutI CAGTG 4 cut(s) 454, 555, 699, 781
Cac8I GCNNGC 3 cut(s) 135, 541, 640
CaiI CAGNNNCTG 2 cut(s) 540, 701
CfoI GCGC 2 cut(s) 364, 539
Cfr10I RCCGGY 3 cut(s) 31, 245, 739
Cfr13I GGNCC 2 cut(s) 68, 469
Csp6I GTAC 4 cut(s) 243, 550, 747, 824
CspAI ACCGGT 2 cut(s) 31, 739
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviAII CATG 3 cut(s) 279, 294, 639
CviQI GTAC 4 cut(s) 243, 550, 747, 824
DdeI CTNAG 3 cut(s) 322, 473, 694
DpnI GATC 3 cut(s) 53, 672, 781
DpnII GATC 3 cut(s) 51, 670, 779
DraI TTTAAA 1 cut(s) 792
EaeI YGGCCR 1 cut(s) 226
Eco47I GGWCC 2 cut(s) 68, 469
Eco81I CCTNAGG 1 cut(s) 473
Eco91I GGTNACC 1 cut(s) 27
EcoO109I RGGNCCY 2 cut(s) 68, 469
EcoO65I GGTNACC 1 cut(s) 27
EcoRI GAATTC 1 cut(s) 11
EcoRII CCWGG 2 cut(s) 145, 728
FaeI CATG 3 cut(s) 282, 297, 642
FaqI GGGAC 1 cut(s) 482
FatI CATG 3 cut(s) 278, 293, 638
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 5 cut(s) 250, 365, 532, 535, 594
FokI GGATG 2 cut(s) 661, 712
Fsp4HI GCNGC 5 cut(s) 250, 365, 532, 535, 594
FspBI CTAG 1 cut(s) 90
FspI TGCGCA 1 cut(s) 363
GlaI GCGC 2 cut(s) 363, 538
GluI GCNGC 5 cut(s) 250, 365, 532, 535, 594
GsaI CCCAGC 1 cut(s) 338
HaeII RGCGCY 1 cut(s) 540
HaeIII GGCC 3 cut(s) 133, 189, 228
HapII CCGG 5 cut(s) 32, 212, 229, 246, 740
HhaI GCGC 2 cut(s) 364, 539
Hin1II CATG 3 cut(s) 282, 297, 642
Hin6I GCGC 2 cut(s) 362, 537
HinP1I GCGC 2 cut(s) 362, 537
HindIII AAGCTT 1 cut(s) 764
HinfI GANTC 1 cut(s) 83
HpaII CCGG 5 cut(s) 32, 212, 229, 246, 740
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 2 cut(s) 550, 605
Hpy188I TCNGA 2 cut(s) 82, 504
Hpy188III TCNNGA 4 cut(s) 66, 324, 438, 801
Hpy8I GTNNAC 2 cut(s) 550, 605
Hpy99I CGWCG 1 cut(s) 817
HpyCH4III ACNGT 4 cut(s) 164, 418, 523, 834
HpyCH4V TGCA 7 cut(s) 117, 137, 252, 447, 573, 650, 774
HpyF10VI GCNNNNNNNGC 4 cut(s) 225, 344, 540, 826
HpyF3I CTNAG 3 cut(s) 322, 473, 694
Hsp92II CATG 3 cut(s) 282, 297, 642
HspAI GCGC 2 cut(s) 362, 537
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 3 cut(s) 51, 670, 779
LmnI GCTCC 1 cut(s) 214
Lsp1109I GCAGC 4 cut(s) 236, 376, 546, 580
LweI GCATC 2 cut(s) 347, 807
MaeI CTAG 1 cut(s) 90
MaeIII GTNAC 3 cut(s) 27, 418, 656
MalI GATC 3 cut(s) 53, 672, 781
MboI GATC 3 cut(s) 51, 670, 779
MboII GAAGA 1 cut(s) 529
MfeI CAATTG 2 cut(s) 112, 783
MluCI AATT 7 cut(s) 11, 93, 112, 350, 442, 783, 852
MluI ACGCGT 1 cut(s) 660
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 4 cut(s) 311, 317, 468, 569
MseI TTAA 5 cut(s) 402, 413, 429, 791, 840
MspI CCGG 5 cut(s) 32, 212, 229, 246, 740
MspR9I CCNGG 2 cut(s) 147, 730
MunI CAATTG 2 cut(s) 112, 783
Mva1269I GAATGC 1 cut(s) 716
MvaI CCWGG 2 cut(s) 147, 730
MvnI CGCG 1 cut(s) 662
MwoI GCNNNNNNNGC 4 cut(s) 225, 344, 540, 826
NdeII GATC 3 cut(s) 51, 670, 779
NlaIII CATG 3 cut(s) 282, 297, 642
NlaIV GGNNCC 3 cut(s) 70, 301, 470
NmuCI GTSAC 1 cut(s) 418
NsbI TGCGCA 1 cut(s) 363
NspI RCATGY 3 cut(s) 282, 297, 642
PaeI GCATGC 1 cut(s) 642
PctI GAATGC 1 cut(s) 716
PfoI TCCNGGA 1 cut(s) 728
PinAI ACCGGT 2 cut(s) 31, 739
PkrI GCNGC 5 cut(s) 251, 366, 533, 536, 595
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PpuMI RGGWCCY 2 cut(s) 68, 469
PsiI TTATAA 1 cut(s) 107
Psp5II RGGWCCY 2 cut(s) 68, 469
Psp6I CCWGG 2 cut(s) 145, 728
PspEI GGTNACC 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 334
PspGI CCWGG 2 cut(s) 145, 728
PspN4I GGNNCC 3 cut(s) 70, 301, 470
PspPI GGNCC 2 cut(s) 68, 469
PspPPI RGGWCCY 2 cut(s) 68, 469
PstI CTGCAG 2 cut(s) 139, 776
PstNI CAGNNNCTG 2 cut(s) 540, 701
RsaI GTAC 4 cut(s) 244, 551, 748, 825
RsaNI GTAC 4 cut(s) 243, 550, 747, 824
SaqAI TTAA 5 cut(s) 402, 413, 429, 791, 840
SatI GCNGC 5 cut(s) 250, 365, 532, 535, 594
Sau3AI GATC 3 cut(s) 51, 670, 779
Sau96I GGNCC 2 cut(s) 68, 469
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 2 cut(s) 147, 730
SetI ASST 5 cut(s) 211, 221, 427, 474, 768
SfaNI GCATC 2 cut(s) 347, 807
SfcI CTRYAG 2 cut(s) 135, 772
SinI GGWCC 2 cut(s) 68, 469
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
SphI GCATGC 1 cut(s) 642
Sse9I AATT 7 cut(s) 11, 93, 112, 350, 442, 783, 852
SsiI CCGC 1 cut(s) 532
SspMI CTAG 1 cut(s) 90
StyD4I CCNGG 2 cut(s) 145, 728
TaaI ACNGT 4 cut(s) 164, 418, 523, 834
TaqI TCGA 1 cut(s) 800
TasI AATT 7 cut(s) 11, 93, 112, 350, 442, 783, 852
TatI WGTACW 3 cut(s) 549, 746, 823
TauI GCSGC 1 cut(s) 534
Tru1I TTAA 5 cut(s) 402, 413, 429, 791, 840
Tru9I TTAA 5 cut(s) 402, 413, 429, 791, 840
TscAI CASTG 4 cut(s) 454, 562, 706, 781
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 4 cut(s) 249, 364, 534, 593
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 1 cut(s) 51
TspGWI ACGGA 1 cut(s) 184
TspRI CASTG 4 cut(s) 454, 562, 706, 781
VpaK11BI GGWCC 2 cut(s) 68, 469
XapI RAATTY 3 cut(s) 11, 93, 350
XceI RCATGY 3 cut(s) 282, 297, 642
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.