Rh6AG361900

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0011929
Physical Location & Seq
Reverse (-)
56081507 .. 56083676
2170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG361900.1

Sequence Viewer

Length: 903 bp
ATGATTAAAAGTAGTAAGGGAGTAGATGTCCCTTCTAAATTAATAGATAATTGGTGCGCCATCCTCTTTATTTTGGGAGGAATTGAGTTTCTTGAATTTTTGTCTCCAGGACCCAAGTTGTCCGAGTCTGCTAGAATTTTCACCATTATAAACAATTGCAAAGAGACAATCTGGCCTGCAGTATTTCCTGGGGAGAACTTCAACGGTGGTGGCTTTCCACTAAAATCAGGCCAGTCCATTGTATTCACAGCTCCGGTTAGCTGGTCAGGCCGGATATGGGGTCGTACCGGCTGCAACTTTGACAAAAATGGCAATGGAACATGCCAGACTGGGGCATGTGGCACCAGCCTCAAGTGTGGAGCCTCAGGAAACACCCCAGCATCACTTGCTGAATTTACACTTGCGCAGCCAGATTTTTATGATGTTAGTCTTGTTGATGGGTTTAACTTGCCATTGACTATCACACCTGTTAATGGTTCGGGAAATTGCAGTGCTTCTGGTTGTGATGGGGACCTGAGGACTACTTGCCCGAATGAGTTGTCTGTGAAATCAAATGGGAAGACTGTTGGCTGCCGCAGCGCCTGCGATGTGTACAACACTGATGAGTATTGTTGCAGAGGGGTATTTGGAAACGCTGCTGTATGTAAACCCACATATTATTCCAAGAAGTTCAAAGAAGCATGCCCTACTGCATATAGTTACGCGTATGATGATCCATCCAGTATTTTCACTTGCTCAGGCACTGATTATATCGTCGCATTCTGCTCATCCAGGAAGCAACCGGTATGTACATATCATAACAACAAGCTTGTCTGCAGTGGATCAATTGGTTTAAAGTCATCGAGATCGTGGGCGACGATGCTTGTACTGCTACTGCTGATTAACTTATGGATCATTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

300

Amino Acids

32.17

Weight (kDa)

8.02

Isoelectric Point (pI)

34.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 51 - 256 1.4e-76 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77700 AT1G77700 AT1G77700
fragaria_vesca FvH4_2g26400
malus_domestica MD08G1169300.v1.1 MD15G1355700.v1.1 MD15G1355800.v1.1
prunus_persica Prupe.1G503200_v2.0.a1
pyrus_communis pycom08g14470 pycom15g31790
rosa_chinensis RchiOBHm_Chr6g0294961
rosa_laevigata RLG00000011825
rosa_roxburghii Rroxscaffold_7G00172790
rosa_rugosa Rorug06G0248900
rosa_samantha Rh6AG361900 Rh6BG369400 Rh6CG375900 Rh6DG362500
rosa_wichuraiana Rw6G031580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 149
Acc16I TGCGCA 1 cut(s) 405
AccB1I GGYRCC 1 cut(s) 341
AccII CGCG 1 cut(s) 704
AciI CCGC 1 cut(s) 574
AclWI GGATC 3 cut(s) 707, 829, 899
AcsI RAATTY 3 cut(s) 95, 135, 392
AfaI GTAC 4 cut(s) 286, 593, 790, 867
AfiI CCNNNNNNNGG 3 cut(s) 277, 331, 473
AflIII ACRYGT 1 cut(s) 702
AgeI ACCGGT 1 cut(s) 781
AgsI TTSAA 3 cut(s) 95, 202, 673
AjnI CCWGG 3 cut(s) 106, 187, 770
AluBI AGCT 3 cut(s) 251, 261, 808
AluI AGCT 3 cut(s) 251, 261, 808
Alw26I GTCTC 2 cut(s) 108, 158
AlwI GGATC 3 cut(s) 707, 829, 899
AlwNI CAGNNNCTG 2 cut(s) 582, 743
AoxI GGCC 3 cut(s) 173, 229, 268
ApeKI GCWGC 5 cut(s) 291, 406, 570, 576, 635
ApoI RAATTY 3 cut(s) 95, 135, 392
ArsI GACNNNNNNTTYG 2 cut(s) 524, 556
AseI ATTAAT 1 cut(s) 41
AsiGI ACCGGT 1 cut(s) 781
AspLEI GCGC 3 cut(s) 59, 406, 581
AspS9I GGNCC 2 cut(s) 110, 511
AsuHPI GGTGA 1 cut(s) 133
AvaII GGWCC 2 cut(s) 110, 511
AxyI CCTNAGG 2 cut(s) 364, 515
BanI GGYRCC 1 cut(s) 341
BbsI GAAGAC 1 cut(s) 566
BbvI GCAGC 5 cut(s) 278, 418, 557, 588, 622
BccI CCATC 4 cut(s) 68, 431, 500, 724
BciT130I CCWGG 3 cut(s) 108, 189, 772
BcoDI GTCTC 2 cut(s) 108, 158
BfaI CTAG 1 cut(s) 132
BfmI CTRYAG 2 cut(s) 177, 814
BfoI RGCGCY 1 cut(s) 582
BisI GCNGC 6 cut(s) 292, 407, 571, 574, 577, 636
BlsI GCNGC 6 cut(s) 293, 408, 572, 575, 578, 637
Bme1390I CCNGG 3 cut(s) 108, 189, 772
Bme18I GGWCC 2 cut(s) 110, 511
BmgT120I GGNCC 2 cut(s) 110, 511
BmiI GGNNCC 4 cut(s) 112, 343, 361, 512
BmrFI CCNGG 3 cut(s) 108, 189, 772
BmrI ACTGGG 1 cut(s) 339
BmsI GCATC 2 cut(s) 389, 849
BmuI ACTGGG 1 cut(s) 339
BpiI GAAGAC 1 cut(s) 566
BpmI CTGGAG 1 cut(s) 90
Bpu10I CCTNAGC 1 cut(s) 736
BpuEI CTTGAG 1 cut(s) 335
BsaJI CCNNGG 1 cut(s) 188
BsaWI WCCGGW 2 cut(s) 253, 781
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 3 cut(s) 277, 331, 473
Bse118I RCCGGY 2 cut(s) 287, 781
Bse1I ACTGG 3 cut(s) 232, 334, 720
Bse21I CCTNAGG 2 cut(s) 364, 515
Bse3DI GCAATG 1 cut(s) 319
BseBI CCWGG 3 cut(s) 108, 189, 772
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 3 cut(s) 60, 716, 767
BseLI CCNNNNNNNGG 3 cut(s) 277, 331, 473
BseMI GCAATG 1 cut(s) 319
BseMII CTCAG 3 cut(s) 378, 506, 750
BseNI ACTGG 3 cut(s) 232, 334, 720
BseXI GCAGC 5 cut(s) 278, 418, 557, 588, 622
BseYI CCCAGC 1 cut(s) 376
Bsh1236I CGCG 1 cut(s) 704
BshFI GGCC 3 cut(s) 175, 231, 270
BshNI GGYRCC 1 cut(s) 341
BshTI ACCGGT 1 cut(s) 781
BsiSI CCGG 4 cut(s) 254, 271, 288, 782
BslFI GGGAC 2 cut(s) 14, 524
BslI CCNNNNNNNGG 3 cut(s) 277, 331, 473
BsmAI GTCTC 2 cut(s) 108, 158
BsmFI GGGAC 2 cut(s) 14, 524
BsmI GAATGC 1 cut(s) 758
BsnI GGCC 3 cut(s) 175, 231, 270
Bsp1407I TGTACA 2 cut(s) 591, 788
Bsp143I GATC 4 cut(s) 712, 821, 845, 891
BspACI CCGC 1 cut(s) 574
BspANI GGCC 3 cut(s) 175, 231, 270
BspCNI CTCAG 3 cut(s) 377, 507, 749
BspFNI CGCG 1 cut(s) 704
BspLI GGNNCC 4 cut(s) 112, 343, 361, 512
BspMAI CTGCAG 2 cut(s) 181, 818
BspPI GGATC 3 cut(s) 707, 829, 899
BspT107I GGYRCC 1 cut(s) 341
BsrDI GCAATG 1 cut(s) 319
BsrFI RCCGGY 2 cut(s) 287, 781
BsrGI TGTACA 2 cut(s) 591, 788
BsrI ACTGG 3 cut(s) 232, 334, 720
BssAI RCCGGY 2 cut(s) 287, 781
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 4 cut(s) 712, 821, 845, 891
Bst2UI CCWGG 3 cut(s) 108, 189, 772
Bst4CI ACNGT 2 cut(s) 206, 565
BstAPI GCANNNNNTGC 2 cut(s) 386, 582
BstAUI TGTACA 2 cut(s) 591, 788
BstC8I GCNNGC 3 cut(s) 177, 583, 682
BstDEI CTNAG 3 cut(s) 364, 515, 736
BstF5I GGATG 3 cut(s) 60, 716, 767
BstFNI CGCG 1 cut(s) 704
BstH2I RGCGCY 1 cut(s) 582
BstHHI GCGC 3 cut(s) 59, 406, 581
BstKTI GATC 4 cut(s) 715, 824, 848, 894
BstMAI GTCTC 2 cut(s) 108, 158
BstMBI GATC 4 cut(s) 712, 821, 845, 891
BstMWI GCNNNNNNNGC 5 cut(s) 267, 386, 576, 582, 868
BstNI CCWGG 3 cut(s) 108, 189, 772
BstNSI RCATGY 3 cut(s) 324, 339, 684
BstSCI CCNGG 3 cut(s) 106, 187, 770
BstSFI CTRYAG 2 cut(s) 177, 814
BstUI CGCG 1 cut(s) 704
BstV1I GCAGC 5 cut(s) 278, 418, 557, 588, 622
BstV2I GAAGAC 1 cut(s) 566
Bsu36I CCTNAGG 2 cut(s) 364, 515
BsuRI GGCC 3 cut(s) 175, 231, 270
BtgZI GCGATG 1 cut(s) 600
BtsCI GGATG 3 cut(s) 60, 716, 767
BtsI GCAGTG 2 cut(s) 496, 823
BtsIMutI CAGTG 4 cut(s) 496, 597, 741, 823
Cac8I GCNNGC 3 cut(s) 177, 583, 682
CaiI CAGNNNCTG 2 cut(s) 582, 743
CfoI GCGC 3 cut(s) 59, 406, 581
Cfr10I RCCGGY 2 cut(s) 287, 781
Cfr13I GGNCC 2 cut(s) 110, 511
Csp6I GTAC 4 cut(s) 285, 592, 789, 866
CspAI ACCGGT 1 cut(s) 781
CspCI CAANNNNNGTGG 2 cut(s) 190, 225
CviAII CATG 3 cut(s) 321, 336, 681
CviQI GTAC 4 cut(s) 285, 592, 789, 866
DdeI CTNAG 3 cut(s) 364, 515, 736
DpnI GATC 4 cut(s) 714, 823, 847, 893
DpnII GATC 4 cut(s) 712, 821, 845, 891
DraI TTTAAA 1 cut(s) 834
Eco47I GGWCC 2 cut(s) 110, 511
Eco81I CCTNAGG 2 cut(s) 364, 515
EcoO109I RGGNCCY 2 cut(s) 110, 511
EcoRII CCWGG 3 cut(s) 106, 187, 770
FaeI CATG 3 cut(s) 324, 339, 684
FaqI GGGAC 2 cut(s) 14, 524
FatI CATG 3 cut(s) 320, 335, 680
Fnu4HI GCNGC 6 cut(s) 292, 407, 571, 574, 577, 636
FokI GGATG 3 cut(s) 47, 703, 754
Fsp4HI GCNGC 6 cut(s) 292, 407, 571, 574, 577, 636
FspBI CTAG 1 cut(s) 132
FspI TGCGCA 1 cut(s) 405
GlaI GCGC 3 cut(s) 58, 405, 580
GluI GCNGC 6 cut(s) 292, 407, 571, 574, 577, 636
GsaI CCCAGC 1 cut(s) 380
GsuI CTGGAG 1 cut(s) 90
HaeII RGCGCY 1 cut(s) 582
HaeIII GGCC 3 cut(s) 175, 231, 270
HapII CCGG 4 cut(s) 254, 271, 288, 782
HhaI GCGC 3 cut(s) 59, 406, 581
Hin1II CATG 3 cut(s) 324, 339, 684
Hin6I GCGC 3 cut(s) 57, 404, 579
HinP1I GCGC 3 cut(s) 57, 404, 579
HindIII AAGCTT 1 cut(s) 806
HinfI GANTC 1 cut(s) 125
HpaII CCGG 4 cut(s) 254, 271, 288, 782
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 2 cut(s) 592, 647
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 4 cut(s) 92, 366, 480, 843
Hpy8I GTNNAC 2 cut(s) 592, 647
Hpy99I CGWCG 2 cut(s) 758, 859
HpyAV CCTTC 1 cut(s) 42
HpyCH4III ACNGT 2 cut(s) 206, 565
HpyCH4V TGCA 7 cut(s) 159, 179, 294, 489, 615, 692, 816
HpyF10VI GCNNNNNNNGC 5 cut(s) 267, 386, 576, 582, 868
HpyF3I CTNAG 3 cut(s) 364, 515, 736
Hsp92II CATG 3 cut(s) 324, 339, 684
HspAI GCGC 3 cut(s) 57, 404, 579
Kzo9I GATC 4 cut(s) 712, 821, 845, 891
LmnI GCTCC 2 cut(s) 256, 359
Lsp1109I GCAGC 5 cut(s) 278, 418, 557, 588, 622
LweI GCATC 2 cut(s) 389, 849
MaeI CTAG 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 698
MalI GATC 4 cut(s) 714, 823, 847, 893
MboI GATC 4 cut(s) 712, 821, 845, 891
MboII GAAGA 1 cut(s) 571
MfeI CAATTG 2 cut(s) 154, 825
MluCI AATT 9 cut(s) 38, 49, 81, 95, 135, 154, 392, 484, 825
MluI ACGCGT 1 cut(s) 702
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 6 cut(s) 71, 74, 359, 373, 510, 611
MseI TTAA 6 cut(s) 6, 41, 444, 471, 833, 882
MspI CCGG 4 cut(s) 254, 271, 288, 782
MspR9I CCNGG 3 cut(s) 108, 189, 772
MunI CAATTG 2 cut(s) 154, 825
Mva1269I GAATGC 1 cut(s) 758
MvaI CCWGG 3 cut(s) 108, 189, 772
MvnI CGCG 1 cut(s) 704
MwoI GCNNNNNNNGC 5 cut(s) 267, 386, 576, 582, 868
NdeII GATC 4 cut(s) 712, 821, 845, 891
NlaIII CATG 3 cut(s) 324, 339, 684
NlaIV GGNNCC 4 cut(s) 112, 343, 361, 512
NsbI TGCGCA 1 cut(s) 405
NspI RCATGY 3 cut(s) 324, 339, 684
PaeI GCATGC 1 cut(s) 684
PcsI WCGNNNNNNNCGW 1 cut(s) 854
PctI GAATGC 1 cut(s) 758
PfoI TCCNGGA 2 cut(s) 106, 770
PinAI ACCGGT 1 cut(s) 781
PkrI GCNGC 6 cut(s) 293, 408, 572, 575, 578, 637
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PpuMI RGGWCCY 2 cut(s) 110, 511
PshBI ATTAAT 1 cut(s) 41
PsiI TTATAA 1 cut(s) 149
Psp5II RGGWCCY 2 cut(s) 110, 511
Psp6I CCWGG 3 cut(s) 106, 187, 770
PspFI CCCAGC 1 cut(s) 376
PspGI CCWGG 3 cut(s) 106, 187, 770
PspN4I GGNNCC 4 cut(s) 112, 343, 361, 512
PspPI GGNCC 2 cut(s) 110, 511
PspPPI RGGWCCY 2 cut(s) 110, 511
PstI CTGCAG 2 cut(s) 181, 818
PstNI CAGNNNCTG 2 cut(s) 582, 743
RsaI GTAC 4 cut(s) 286, 593, 790, 867
RsaNI GTAC 4 cut(s) 285, 592, 789, 866
SaqAI TTAA 6 cut(s) 6, 41, 444, 471, 833, 882
SatI GCNGC 6 cut(s) 292, 407, 571, 574, 577, 636
Sau3AI GATC 4 cut(s) 712, 821, 845, 891
Sau96I GGNCC 2 cut(s) 110, 511
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 3 cut(s) 108, 189, 772
SetI ASST 5 cut(s) 253, 263, 469, 516, 810
SfaNI GCATC 2 cut(s) 389, 849
SfcI CTRYAG 2 cut(s) 177, 814
SinI GGWCC 2 cut(s) 110, 511
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
SphI GCATGC 1 cut(s) 684
Sse9I AATT 9 cut(s) 38, 49, 81, 95, 135, 154, 392, 484, 825
SsiI CCGC 1 cut(s) 574
SspMI CTAG 1 cut(s) 132
StyD4I CCNGG 3 cut(s) 106, 187, 770
TaaI ACNGT 2 cut(s) 206, 565
TaqI TCGA 1 cut(s) 842
TasI AATT 9 cut(s) 38, 49, 81, 95, 135, 154, 392, 484, 825
TatI WGTACW 3 cut(s) 591, 788, 865
TauI GCSGC 1 cut(s) 576
Tru1I TTAA 6 cut(s) 6, 41, 444, 471, 833, 882
Tru9I TTAA 6 cut(s) 6, 41, 444, 471, 833, 882
TscAI CASTG 4 cut(s) 496, 604, 748, 823
TseI GCWGC 5 cut(s) 291, 406, 570, 576, 635
TspRI CASTG 4 cut(s) 496, 604, 748, 823
VpaK11BI GGWCC 2 cut(s) 110, 511
VspI ATTAAT 1 cut(s) 41
XapI RAATTY 3 cut(s) 95, 135, 392
XceI RCATGY 3 cut(s) 324, 339, 684
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.