Prupe.1G503200_v2.0.a1

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011929
Physical Location & Seq
Forward (+)
41610656 .. 41612462
1807 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G503200.1

Sequence Viewer

Length: 861 bp
ATGGCAGCGCATCTCAATGTGTTCTTACCAGTTTTATTGGTTTTTATGGCTATTTCATCAGGACCAAAGTTATCAGAGTCTGCTAGAATTTTCACCATAATAAACAATTGCAAGGAGACAGTCTGGCCTGCAGTGACCCCAGGGGAGAGCTTTAATGGTGGTGGTTTTATGCTAAAACAGGGCCAGTCAGTCATATTCACAGCCCCAGTCAGCTGGTCTGGCAGGATATGGGGTCGAACGGGCTGCAACTTCGACAACAAAAATGGCAACACTTCATGCCAGACCGGAGACTGTGGCGGCACCCTCAAGTGTGGAGCTTCAGGAAAGACGCCAGCAACACTTGCCGAATTTACATTGGCAGCTCTAGACTTTTATGATGTTAGCCTTGTTGATGGGTTCAACTTGCCAATGGTTGTAACACCTCTGAATGGTACGGGAAATTGCAGTGTTTCGGGTTGCGATGGGGACCTGAGGTCCAGTTGCCCATCTGTGCTCTCTGTCAAAGCAAATGGGAAGACTGTTGGATGCAGGAGCGCCTGTGATGTGTTCAACACTGATGAGTATTGTTGCAGAGGGGTTTTTGGCAACCCTGTTACATGCAAACCCACATATTATTCCAAGATGTTCAAAGAAGCATGCCCTACTGCCTATAGTTATGCTTATGATGATCCAACCAGTATCTTTACTTGCTCTGGCACAGATTATGTGGTTGCATTCTGCTCAAGCAGGAAGCAACCAGTGTGCACATATCATAACCACAAGCTTGTCTGTAGTACTAATGGTTCAAAAGGTTTAAAGTCAATGAGATGGACTGTGATGCTTGCACTGATGGTGATGATTAATTTATGGATTATTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

287

Amino Acids

30.73

Weight (kDa)

8.38

Isoelectric Point (pI)

36.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77700 AT1G77700 AT1G77700
fragaria_vesca FvH4_2g26400
malus_domestica MD08G1169300.v1.1 MD15G1355700.v1.1 MD15G1355800.v1.1
prunus_persica Prupe.1G503200_v2.0.a1
pyrus_communis pycom08g14470 pycom15g31790
rosa_chinensis RchiOBHm_Chr6g0294961
rosa_laevigata RLG00000011825
rosa_roxburghii Rroxscaffold_7G00172790
rosa_rugosa Rorug06G0248900
rosa_samantha Rh6AG361900 Rh6BG369400 Rh6CG375900 Rh6DG362500
rosa_wichuraiana Rw6G031580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 299
AciI CCGC 1 cut(s) 297
AclWI GGATC 1 cut(s) 662
AcsI RAATTY 2 cut(s) 87, 347
AcuI CTGAAG 1 cut(s) 303
AcyI GRCGYC 1 cut(s) 329
AfaI GTAC 2 cut(s) 433, 775
AfiI CCNNNNNNNGG 1 cut(s) 428
AgsI TTSAA 4 cut(s) 400, 550, 628, 786
AhdI GACNNNNNGTC 1 cut(s) 472
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 5 cut(s) 150, 213, 317, 362, 763
AluI AGCT 5 cut(s) 150, 213, 317, 362, 763
Alw21I GWGCWC 2 cut(s) 495, 746
Alw26I GTCTC 2 cut(s) 110, 282
Alw44I GTGCAC 1 cut(s) 742
AlwI GGATC 1 cut(s) 662
AlwNI CAGNNNCTG 1 cut(s) 80
AoxI GGCC 2 cut(s) 125, 181
ApaLI GTGCAC 1 cut(s) 742
ApeKI GCWGC 3 cut(s) 5, 243, 359
ApoI RAATTY 2 cut(s) 87, 347
AseI ATTAAT 1 cut(s) 840
AspLEI GCGC 2 cut(s) 10, 536
AspS9I GGNCC 4 cut(s) 62, 181, 466, 474
AsuHPI GGTGA 2 cut(s) 85, 844
AvaII GGWCC 3 cut(s) 62, 466, 474
AxyI CCTNAGG 1 cut(s) 470
BaeGI GKGCMC 1 cut(s) 746
BanI GGYRCC 1 cut(s) 299
BbsI GAAGAC 1 cut(s) 521
Bbv12I GWGCWC 2 cut(s) 495, 746
BbvI GCAGC 3 cut(s) 17, 230, 371
BccI CCATC 5 cut(s) 386, 455, 493, 801, 823
BcgI CGANNNNNNTGC 2 cut(s) 225, 259
BciT130I CCWGG 1 cut(s) 141
BcoDI GTCTC 2 cut(s) 110, 282
BfaI CTAG 2 cut(s) 84, 365
BfmI CTRYAG 3 cut(s) 129, 649, 769
BfoI RGCGCY 1 cut(s) 537
BisI GCNGC 4 cut(s) 6, 244, 298, 360
BlsI GCNGC 4 cut(s) 7, 245, 299, 361
BmcAI AGTACT 1 cut(s) 775
Bme1390I CCNGG 1 cut(s) 141
Bme18I GGWCC 3 cut(s) 62, 466, 474
BmeRI GACNNNNNGTC 1 cut(s) 472
BmgT120I GGNCC 4 cut(s) 62, 181, 466, 474
BmiI GGNNCC 2 cut(s) 301, 467
BmrFI CCNGG 1 cut(s) 141
BmrI ACTGGG 1 cut(s) 200
BmsI GCATC 3 cut(s) 19, 515, 807
BmuI ACTGGG 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 521
BpuEI CTTGAG 2 cut(s) 290, 706
BsaHI GRCGYC 1 cut(s) 329
BsaJI CCNNGG 2 cut(s) 139, 140
BsaWI WCCGGW 1 cut(s) 284
BsaXI ACNNNNNCTCC 2 cut(s) 523, 553
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse1I ACTGG 6 cut(s) 29, 184, 206, 477, 675, 737
Bse21I CCTNAGG 1 cut(s) 470
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 2 cut(s) 139, 140
BseGI GGATG 1 cut(s) 530
BseLI CCNNNNNNNGG 1 cut(s) 428
BseMII CTCAG 1 cut(s) 461
BseNI ACTGG 6 cut(s) 29, 184, 206, 477, 675, 737
BseSI GKGCMC 1 cut(s) 746
BseXI GCAGC 3 cut(s) 17, 230, 371
BshFI GGCC 2 cut(s) 127, 183
BshNI GGYRCC 1 cut(s) 299
BsiHKAI GWGCWC 2 cut(s) 495, 746
BsiSI CCGG 1 cut(s) 285
BslFI GGGAC 1 cut(s) 479
BslI CCNNNNNNNGG 1 cut(s) 428
BsmAI GTCTC 2 cut(s) 110, 282
BsmFI GGGAC 1 cut(s) 479
BsmI GAATGC 1 cut(s) 713
BsnI GGCC 2 cut(s) 127, 183
Bsp1286I GDGCHC 2 cut(s) 495, 746
Bsp143I GATC 1 cut(s) 667
BspACI CCGC 1 cut(s) 297
BspANI GGCC 2 cut(s) 127, 183
BspCNI CTCAG 1 cut(s) 462
BspLI GGNNCC 2 cut(s) 301, 467
BspMAI CTGCAG 1 cut(s) 133
BspPI GGATC 1 cut(s) 662
BspT107I GGYRCC 1 cut(s) 299
BsrI ACTGG 6 cut(s) 29, 184, 206, 477, 675, 737
BssECI CCNNGG 2 cut(s) 139, 140
BssMI GATC 1 cut(s) 667
BssNI GRCGYC 1 cut(s) 329
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 4 cut(s) 121, 293, 520, 814
BstACI GRCGYC 1 cut(s) 329
BstAPI GCANNNNNTGC 1 cut(s) 341
BstC8I GCNNGC 4 cut(s) 129, 333, 637, 822
BstDEI CTNAG 1 cut(s) 470
BstF5I GGATG 1 cut(s) 530
BstH2I RGCGCY 1 cut(s) 537
BstHHI GCGC 2 cut(s) 10, 536
BstKTI GATC 1 cut(s) 670
BstMAI GTCTC 2 cut(s) 110, 282
BstMBI GATC 1 cut(s) 667
BstMWI GCNNNNNNNGC 2 cut(s) 219, 341
BstNI CCWGG 1 cut(s) 141
BstNSI RCATGY 2 cut(s) 600, 639
BstSCI CCNGG 1 cut(s) 139
BstSFI CTRYAG 3 cut(s) 129, 649, 769
BstSLI GKGCMC 1 cut(s) 746
BstV1I GCAGC 3 cut(s) 17, 230, 371
BstV2I GAAGAC 1 cut(s) 521
BstXI CCANNNNNNTGG 1 cut(s) 213
Bsu36I CCTNAGG 1 cut(s) 470
BsuRI GGCC 2 cut(s) 127, 183
BtgZI GCGATG 1 cut(s) 474
BtsCI GGATG 1 cut(s) 530
BtsI GCAGTG 2 cut(s) 138, 451
BtsIMutI CAGTG 5 cut(s) 138, 451, 552, 744, 824
Cac8I GCNNGC 4 cut(s) 129, 333, 637, 822
CaiI CAGNNNCTG 1 cut(s) 80
CfoI GCGC 2 cut(s) 10, 536
Cfr13I GGNCC 4 cut(s) 62, 181, 466, 474
CseI GACGC 1 cut(s) 337
Csp6I GTAC 2 cut(s) 432, 774
CviAII CATG 3 cut(s) 276, 597, 636
CviQI GTAC 2 cut(s) 432, 774
DdeI CTNAG 1 cut(s) 470
DpnI GATC 1 cut(s) 669
DpnII GATC 1 cut(s) 667
DraI TTTAAA 1 cut(s) 795
DriI GACNNNNNGTC 1 cut(s) 472
Eam1105I GACNNNNNGTC 1 cut(s) 472
Eco47I GGWCC 3 cut(s) 62, 466, 474
Eco57I CTGAAG 1 cut(s) 303
Eco81I CCTNAGG 1 cut(s) 470
EcoO109I RGGNCCY 1 cut(s) 466
EcoRII CCWGG 1 cut(s) 139
FaeI CATG 3 cut(s) 279, 600, 639
FaqI GGGAC 1 cut(s) 479
FatI CATG 3 cut(s) 275, 596, 635
Fnu4HI GCNGC 4 cut(s) 6, 244, 298, 360
FokI GGATG 1 cut(s) 537
Fsp4HI GCNGC 4 cut(s) 6, 244, 298, 360
FspBI CTAG 2 cut(s) 84, 365
GlaI GCGC 2 cut(s) 9, 535
GluI GCNGC 4 cut(s) 6, 244, 298, 360
HaeII RGCGCY 1 cut(s) 537
HaeIII GGCC 2 cut(s) 127, 183
HapII CCGG 1 cut(s) 285
HgaI GACGC 1 cut(s) 337
HhaI GCGC 2 cut(s) 10, 536
Hin1I GRCGYC 1 cut(s) 329
Hin1II CATG 3 cut(s) 279, 600, 639
Hin6I GCGC 2 cut(s) 8, 534
HinP1I GCGC 2 cut(s) 8, 534
HindIII AAGCTT 1 cut(s) 761
HinfI GANTC 1 cut(s) 77
HpaII CCGG 1 cut(s) 285
HphI GGTGA 2 cut(s) 85, 844
Hpy166II GTNNAC 1 cut(s) 744
Hpy188I TCNGA 2 cut(s) 76, 426
Hpy188III TCNNGA 3 cut(s) 60, 321, 365
Hpy8I GTNNAC 1 cut(s) 744
HpyCH4III ACNGT 4 cut(s) 121, 293, 520, 814
HpyF10VI GCNNNNNNNGC 2 cut(s) 219, 341
HpyF3I CTNAG 1 cut(s) 470
Hsp92I GRCGYC 1 cut(s) 329
Hsp92II CATG 3 cut(s) 279, 600, 639
HspAI GCGC 2 cut(s) 8, 534
Kzo9I GATC 1 cut(s) 667
LmnI GCTCC 2 cut(s) 314, 531
Lsp1109I GCAGC 3 cut(s) 17, 230, 371
LweI GCATC 3 cut(s) 19, 515, 807
MaeI CTAG 2 cut(s) 84, 365
MaeIII GTNAC 3 cut(s) 133, 415, 592
MalI GATC 1 cut(s) 669
MboI GATC 1 cut(s) 667
MboII GAAGA 1 cut(s) 526
MfeI CAATTG 1 cut(s) 106
MhlI GDGCHC 2 cut(s) 495, 746
MluCI AATT 5 cut(s) 87, 106, 347, 439, 841
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 2 cut(s) 502, 695
MnlI CCTC 4 cut(s) 314, 432, 465, 566
MseI TTAA 3 cut(s) 153, 794, 840
MslI CAYNNNNRTG 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 213
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 1 cut(s) 141
MunI CAATTG 1 cut(s) 106
Mva1269I GAATGC 1 cut(s) 713
MvaI CCWGG 1 cut(s) 141
MwoI GCNNNNNNNGC 2 cut(s) 219, 341
NdeII GATC 1 cut(s) 667
NlaIII CATG 3 cut(s) 279, 600, 639
NlaIV GGNNCC 2 cut(s) 301, 467
NmuCI GTSAC 1 cut(s) 133
NspI RCATGY 2 cut(s) 600, 639
PaeI GCATGC 1 cut(s) 639
PasI CCCWGGG 1 cut(s) 140
PctI GAATGC 1 cut(s) 713
PkrI GCNGC 4 cut(s) 7, 245, 299, 361
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PpuMI RGGWCCY 1 cut(s) 466
PshBI ATTAAT 1 cut(s) 840
Psp5II RGGWCCY 1 cut(s) 466
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 2 cut(s) 301, 467
PspPI GGNCC 4 cut(s) 62, 181, 466, 474
PspPPI RGGWCCY 1 cut(s) 466
PsrI GAACNNNNNNTAC 2 cut(s) 766, 798
PstI CTGCAG 1 cut(s) 133
PstNI CAGNNNCTG 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 213
RsaI GTAC 2 cut(s) 433, 775
RsaNI GTAC 2 cut(s) 432, 774
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 3 cut(s) 153, 794, 840
SatI GCNGC 4 cut(s) 6, 244, 298, 360
Sau3AI GATC 1 cut(s) 667
Sau96I GGNCC 4 cut(s) 62, 181, 466, 474
ScaI AGTACT 1 cut(s) 775
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 141
SduI GDGCHC 2 cut(s) 495, 746
SetI ASST 9 cut(s) 152, 215, 319, 364, 424, 471, 476, 765, 793
SfaNI GCATC 3 cut(s) 19, 515, 807
SfcI CTRYAG 3 cut(s) 129, 649, 769
SinI GGWCC 3 cut(s) 62, 466, 474
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 2 cut(s) 305, 721
SmoI CTYRAG 2 cut(s) 305, 721
SphI GCATGC 1 cut(s) 639
Sse9I AATT 5 cut(s) 87, 106, 347, 439, 841
SsiI CCGC 1 cut(s) 297
SspMI CTAG 2 cut(s) 84, 365
StyD4I CCNGG 1 cut(s) 139
TaaI ACNGT 4 cut(s) 121, 293, 520, 814
TaqI TCGA 2 cut(s) 235, 252
TasI AATT 5 cut(s) 87, 106, 347, 439, 841
TatI WGTACW 1 cut(s) 773
TauI GCSGC 1 cut(s) 300
Tru1I TTAA 3 cut(s) 153, 794, 840
Tru9I TTAA 3 cut(s) 153, 794, 840
TscAI CASTG 5 cut(s) 138, 451, 559, 744, 831
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 3 cut(s) 5, 243, 359
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 2 cut(s) 45, 264
TspRI CASTG 5 cut(s) 138, 451, 559, 744, 831
VneI GTGCAC 1 cut(s) 742
VpaK11BI GGWCC 3 cut(s) 62, 466, 474
VspI ATTAAT 1 cut(s) 840
XapI RAATTY 2 cut(s) 87, 347
XbaI TCTAGA 1 cut(s) 364
XceI RCATGY 2 cut(s) 600, 639
XspI CTAG 2 cut(s) 84, 365
ZrmI AGTACT 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.