MD15G1355800.v1.1

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011929
Physical Location & Seq
Forward (+)
42878103 .. 42889839
11737 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1355800.v1.1.491

Sequence Viewer

Length: 858 bp
ATGTTGCTATGGTGTTGGAATCGATCCTCAGCAAAGTGCAGAGATTCGGAGAACGATGGACCAAAGTTATCCGAATCTGCTAGAACTTTCACCATTGTAAACAATTGCAAAGAGACAGTCTGGCCTGCAGTGATTCCTGCGGACAACTTCACTGCTGGTAGTTTTGTGCTAAAACCGGGCCAGTCAATCCTGTTCACTGCCCCAGTTAGCTGGTCTGGCAGGATATGGGGTCGAACAGGCTGCAACTTTGACAAAAATGGCAATGGCTCGTGCCAGACCGGCTGTGGCAGCACCCACCAGTGTGGAGCCTCAGCAAAGCCCCCAGCAACACTCGCTGAATTCACATTGGCCAAGCAAGACTTTTATGATGTGAGCCTTGTTGACGGGTTCAACCTGCCGTTGGTTGTGACACCTCTAAATGGTACGGGAAATTGCAGTGTATCTGGTTGTGACACGGACCTGAGACCGAATTGCCCGAAAGAGCTAGCTGTCAAGGCAAATGGGAAGAATATTGGATGCAGAAGCGCGTGTGACGTGTTCAACACAGATGAGTACTGCTGCCGAGGGCGTTATGGCAATGCTGCGGTGTGTAAACCCACATATTATTCCAAGAAGTTCAAAGAAGCATGCCCTACTGCCTACAGTTATGCTTACGATGATCCGACCAGTATCTTTACTTGCTCGGGCACAGATTACGTCATCGCTTTCTGCTCAACCAGGAAGCAACCGATGTGCACATATCGCCACCACAAGATTCCGTGTCCAAATGTATCTGGATCAGTAGGTTTAAAGTCATTGAGATGGTGGGCTGTGATGCTTGGATTGTTAACGATGATTAATTTATGGATTAATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

286

Amino Acids

31.17

Weight (kDa)

8.63

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 34 - 238 6.2e-75 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77700 AT1G77700 AT1G77700
fragaria_vesca FvH4_2g26400
malus_domestica MD08G1169300.v1.1 MD15G1355700.v1.1 MD15G1355800.v1.1
prunus_persica Prupe.1G503200_v2.0.a1
pyrus_communis pycom08g14470 pycom15g31790
rosa_chinensis RchiOBHm_Chr6g0294961
rosa_laevigata RLG00000011825
rosa_roxburghii Rroxscaffold_7G00172790
rosa_rugosa Rorug06G0248900
rosa_samantha Rh6AG361900 Rh6BG369400 Rh6CG375900 Rh6DG362500
rosa_wichuraiana Rw6G031580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 402
AccII CGCG 1 cut(s) 527
AciI CCGC 2 cut(s) 140, 584
AclWI GGATC 3 cut(s) 18, 653, 784
AcoI YGGCCR 1 cut(s) 348
AcsI RAATTY 1 cut(s) 338
AfaI GTAC 2 cut(s) 424, 554
AfiI CCNNNNNNNGG 2 cut(s) 400, 419
AflIII ACRYGT 1 cut(s) 534
AgsI TTSAA 3 cut(s) 391, 541, 619
AjiI CACGTC 1 cut(s) 535
AjnI CCWGG 1 cut(s) 716
AleI CACNNNNGTG 1 cut(s) 300
AluBI AGCT 3 cut(s) 210, 484, 488
AluI AGCT 3 cut(s) 210, 484, 488
Alw21I GWGCWC 1 cut(s) 737
Alw26I GTCTC 2 cut(s) 107, 457
Alw44I GTGCAC 1 cut(s) 733
AlwI GGATC 3 cut(s) 18, 653, 784
Ama87I CYCGRG 1 cut(s) 682
AoxI GGCC 3 cut(s) 122, 178, 348
ApaLI GTGCAC 1 cut(s) 733
ApeKI GCWGC 4 cut(s) 240, 288, 558, 581
ApoI RAATTY 1 cut(s) 338
ArsI GACNNNNNNTTYG 2 cut(s) 102, 134
AseI ATTAAT 2 cut(s) 837, 849
AspLEI GCGC 1 cut(s) 527
AspS9I GGNCC 3 cut(s) 59, 178, 457
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 82
AsuNHI GCTAGC 1 cut(s) 484
AvaI CYCGRG 1 cut(s) 682
AvaII GGWCC 2 cut(s) 59, 457
BaeGI GKGCMC 2 cut(s) 689, 737
BalI TGGCCA 1 cut(s) 350
BauI CACGAG 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 737
BbvCI CCTCAGC 2 cut(s) 28, 310
BbvI GCAGC 4 cut(s) 227, 300, 545, 568
BccI CCATC 2 cut(s) 50, 795
BceAI ACGGC 1 cut(s) 382
BcgI CGANNNNNNTGC 2 cut(s) 222, 256
BciT130I CCWGG 1 cut(s) 718
BcnI CCSGG 1 cut(s) 177
BcoDI GTCTC 2 cut(s) 107, 457
BfaI CTAG 2 cut(s) 81, 485
BfmI CTRYAG 2 cut(s) 126, 640
BfuAI ACCTGC 1 cut(s) 402
BglI GCCNNNNNGGC 1 cut(s) 279
BisI GCNGC 4 cut(s) 241, 289, 559, 582
BlsI GCNGC 4 cut(s) 242, 290, 560, 583
BmcAI AGTACT 1 cut(s) 554
Bme1390I CCNGG 2 cut(s) 177, 718
Bme18I GGWCC 2 cut(s) 59, 457
BmeT110I CYCGRG 1 cut(s) 682
BmgBI CACGTC 1 cut(s) 535
BmgT120I GGNCC 3 cut(s) 59, 178, 457
BmiI GGNNCC 1 cut(s) 307
BmrFI CCNGG 2 cut(s) 177, 718
BmrI ACTGGG 1 cut(s) 197
BmsI GCATC 2 cut(s) 506, 804
BmtI GCTAGC 1 cut(s) 488
BmuI ACTGGG 1 cut(s) 197
Bpu10I CCTNAGC 2 cut(s) 28, 310
BpuMI CCSGG 1 cut(s) 177
Bsa29I ATCGAT 1 cut(s) 22
BsaI GGTCTC 1 cut(s) 457
BsaJI CCNNGG 1 cut(s) 562
Bsc4I CCNNNNNNNGG 2 cut(s) 400, 419
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 4 cut(s) 181, 203, 298, 666
Bse3DI GCAATG 2 cut(s) 268, 583
BseBI CCWGG 1 cut(s) 718
BseCI ATCGAT 1 cut(s) 22
BseDI CCNNGG 1 cut(s) 562
BseGI GGATG 1 cut(s) 521
BseLI CCNNNNNNNGG 2 cut(s) 400, 419
BseMI GCAATG 2 cut(s) 268, 583
BseMII CTCAG 3 cut(s) 42, 324, 452
BseNI ACTGG 4 cut(s) 181, 203, 298, 666
BseSI GKGCMC 2 cut(s) 689, 737
BseXI GCAGC 4 cut(s) 227, 300, 545, 568
BseYI CCCAGC 1 cut(s) 322
BsgI GTGCAG 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 527
BshFI GGCC 3 cut(s) 124, 180, 350
BshVI ATCGAT 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 737
BsiHKCI CYCGRG 1 cut(s) 682
BsiSI CCGG 2 cut(s) 176, 279
BslI CCNNNNNNNGG 2 cut(s) 400, 419
BsmAI GTCTC 2 cut(s) 107, 457
BsnI GGCC 3 cut(s) 124, 180, 350
Bso31I GGTCTC 1 cut(s) 457
BsoBI CYCGRG 1 cut(s) 682
Bsp1286I GDGCHC 2 cut(s) 689, 737
Bsp143I GATC 3 cut(s) 23, 658, 776
BspACI CCGC 2 cut(s) 140, 584
BspANI GGCC 3 cut(s) 124, 180, 350
BspCNI CTCAG 3 cut(s) 41, 323, 453
BspDI ATCGAT 1 cut(s) 22
BspFNI CGCG 1 cut(s) 527
BspLI GGNNCC 1 cut(s) 307
BspMAI CTGCAG 1 cut(s) 130
BspMI ACCTGC 1 cut(s) 402
BspOI GCTAGC 1 cut(s) 488
BspPI GGATC 3 cut(s) 18, 653, 784
BspTNI GGTCTC 1 cut(s) 457
BsrDI GCAATG 2 cut(s) 268, 583
BsrFI RCCGGY 1 cut(s) 278
BsrI ACTGG 4 cut(s) 181, 203, 298, 666
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 562
BssMI GATC 3 cut(s) 23, 658, 776
BssSI CACGAG 1 cut(s) 268
Bst2BI CACGAG 1 cut(s) 268
Bst2UI CCWGG 1 cut(s) 718
Bst4CI ACNGT 2 cut(s) 118, 644
BstC8I GCNNGC 3 cut(s) 126, 486, 628
BstDEI CTNAG 3 cut(s) 28, 310, 461
BstF5I GGATG 1 cut(s) 521
BstFNI CGCG 1 cut(s) 527
BstHHI GCGC 1 cut(s) 527
BstKTI GATC 3 cut(s) 26, 661, 779
BstMAI GTCTC 2 cut(s) 107, 457
BstMBI GATC 3 cut(s) 23, 658, 776
BstMWI GCNNNNNNNGC 6 cut(s) 216, 279, 288, 332, 494, 741
BstNI CCWGG 1 cut(s) 718
BstNSI RCATGY 1 cut(s) 630
BstSCI CCNGG 2 cut(s) 175, 716
BstSFI CTRYAG 2 cut(s) 126, 640
BstSLI GKGCMC 2 cut(s) 689, 737
BstUI CGCG 1 cut(s) 527
BstV1I GCAGC 4 cut(s) 227, 300, 545, 568
BstXI CCANNNNNNTGG 2 cut(s) 210, 302
Bsu15I ATCGAT 1 cut(s) 22
BsuRI GGCC 3 cut(s) 124, 180, 350
BsuTUI ATCGAT 1 cut(s) 22
BtgZI GCGATG 1 cut(s) 685
BtrI CACGTC 1 cut(s) 535
BtsCI GGATG 1 cut(s) 521
BtsI GCAGTG 4 cut(s) 135, 150, 195, 442
BtsIMutI CAGTG 5 cut(s) 135, 150, 195, 305, 442
BveI ACCTGC 1 cut(s) 402
Cac8I GCNNGC 3 cut(s) 126, 486, 628
CfoI GCGC 1 cut(s) 527
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 3 cut(s) 59, 178, 457
ClaI ATCGAT 1 cut(s) 22
Csp6I GTAC 2 cut(s) 423, 553
CviAII CATG 1 cut(s) 627
CviQI GTAC 2 cut(s) 423, 553
DdeI CTNAG 3 cut(s) 28, 310, 461
DpnI GATC 3 cut(s) 25, 660, 778
DpnII GATC 3 cut(s) 23, 658, 776
DraI TTTAAA 1 cut(s) 789
EaeI YGGCCR 1 cut(s) 348
Eco31I GGTCTC 1 cut(s) 457
Eco47I GGWCC 2 cut(s) 59, 457
Eco88I CYCGRG 1 cut(s) 682
EcoRI GAATTC 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 716
FaeI CATG 1 cut(s) 630
FaiI YATR 9 cut(s) 10, 226, 366, 573, 601, 628, 648, 739, 844
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FatI CATG 1 cut(s) 626
Fnu4HI GCNGC 4 cut(s) 241, 289, 559, 582
FokI GGATG 1 cut(s) 528
Fsp4HI GCNGC 4 cut(s) 241, 289, 559, 582
FspBI CTAG 2 cut(s) 81, 485
GlaI GCGC 1 cut(s) 526
GluI GCNGC 4 cut(s) 241, 289, 559, 582
GsaI CCCAGC 1 cut(s) 326
HaeIII GGCC 3 cut(s) 124, 180, 350
HapII CCGG 2 cut(s) 176, 279
HhaI GCGC 1 cut(s) 527
Hin1II CATG 1 cut(s) 630
Hin6I GCGC 1 cut(s) 525
HinP1I GCGC 1 cut(s) 525
HincII GTYRAC 2 cut(s) 382, 828
HindII GTYRAC 2 cut(s) 382, 828
HinfI GANTC 5 cut(s) 19, 44, 74, 133, 754
HpaI GTTAAC 1 cut(s) 828
HpaII CCGG 2 cut(s) 176, 279
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 6 cut(s) 100, 195, 382, 593, 735, 828
Hpy188I TCNGA 3 cut(s) 49, 73, 663
Hpy188III TCNNGA 1 cut(s) 774
Hpy8I GTNNAC 6 cut(s) 100, 195, 382, 593, 735, 828
HpyCH4III ACNGT 2 cut(s) 118, 644
HpyCH4IV ACGT 2 cut(s) 534, 696
HpyCH4V TGCA 7 cut(s) 39, 108, 128, 243, 435, 519, 735
HpyF10VI GCNNNNNNNGC 6 cut(s) 216, 279, 288, 332, 494, 741
HpyF3I CTNAG 3 cut(s) 28, 310, 461
HpySE526I ACGT 2 cut(s) 534, 696
Hsp92II CATG 1 cut(s) 630
HspAI GCGC 1 cut(s) 525
KspAI GTTAAC 1 cut(s) 828
Kzo9I GATC 3 cut(s) 23, 658, 776
LmnI GCTCC 1 cut(s) 305
Lsp1109I GCAGC 4 cut(s) 227, 300, 545, 568
LweI GCATC 2 cut(s) 506, 804
MaeI CTAG 2 cut(s) 81, 485
MaeII ACGT 2 cut(s) 534, 696
MaeIII GTNAC 3 cut(s) 406, 449, 530
MalI GATC 3 cut(s) 25, 660, 778
MboI GATC 3 cut(s) 23, 658, 776
MboII GAAGA 1 cut(s) 517
MfeI CAATTG 1 cut(s) 103
MhlI GDGCHC 2 cut(s) 689, 737
MlsI TGGCCA 1 cut(s) 350
MluCI AATT 6 cut(s) 103, 338, 430, 469, 838, 850
MluNI TGGCCA 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 686
MnlI CCTC 4 cut(s) 37, 319, 423, 557
Mox20I TGGCCA 1 cut(s) 350
MscI TGGCCA 1 cut(s) 350
MseI TTAA 4 cut(s) 788, 827, 837, 849
MslI CAYNNNNRTG 2 cut(s) 300, 799
Msp20I TGGCCA 1 cut(s) 350
MspI CCGG 2 cut(s) 176, 279
MspR9I CCNGG 2 cut(s) 177, 718
MunI CAATTG 1 cut(s) 103
MvaI CCWGG 1 cut(s) 718
MvnI CGCG 1 cut(s) 527
MwoI GCNNNNNNNGC 6 cut(s) 216, 279, 288, 332, 494, 741
NciI CCSGG 1 cut(s) 177
NdeII GATC 3 cut(s) 23, 658, 776
NheI GCTAGC 1 cut(s) 484
NlaIII CATG 1 cut(s) 630
NlaIV GGNNCC 1 cut(s) 307
NmeAIII GCCGAG 1 cut(s) 587
NmuCI GTSAC 3 cut(s) 406, 449, 530
NspI RCATGY 1 cut(s) 630
OliI CACNNNNGTG 1 cut(s) 300
PaeI GCATGC 1 cut(s) 630
PfeI GAWTC 5 cut(s) 19, 44, 74, 133, 754
PkrI GCNGC 4 cut(s) 242, 290, 560, 583
PshBI ATTAAT 2 cut(s) 837, 849
Psp6I CCWGG 1 cut(s) 716
PspFI CCCAGC 1 cut(s) 322
PspGI CCWGG 1 cut(s) 716
PspN4I GGNNCC 1 cut(s) 307
PspPI GGNCC 3 cut(s) 59, 178, 457
PstI CTGCAG 1 cut(s) 130
RsaI GTAC 2 cut(s) 424, 554
RsaNI GTAC 2 cut(s) 423, 553
RseI CAYNNNNRTG 2 cut(s) 300, 799
SaqAI TTAA 4 cut(s) 788, 827, 837, 849
SatI GCNGC 4 cut(s) 241, 289, 559, 582
Sau3AI GATC 3 cut(s) 23, 658, 776
Sau96I GGNCC 3 cut(s) 59, 178, 457
ScaI AGTACT 1 cut(s) 554
ScrFI CCNGG 2 cut(s) 177, 718
SduI GDGCHC 2 cut(s) 689, 737
SetI ASST 9 cut(s) 212, 396, 415, 462, 486, 490, 537, 699, 787
SfaNI GCATC 2 cut(s) 506, 804
SfcI CTRYAG 2 cut(s) 126, 640
SinI GGWCC 2 cut(s) 59, 457
SmiMI CAYNNNNRTG 2 cut(s) 300, 799
SphI GCATGC 1 cut(s) 630
Sse9I AATT 6 cut(s) 103, 338, 430, 469, 838, 850
SsiI CCGC 2 cut(s) 140, 584
SspI AATATT 1 cut(s) 511
SspMI CTAG 2 cut(s) 81, 485
StyD4I CCNGG 2 cut(s) 175, 716
TaaI ACNGT 2 cut(s) 118, 644
TaiI ACGT 2 cut(s) 537, 699
TaqI TCGA 2 cut(s) 22, 232
TaqII GACCGA 1 cut(s) 481
TasI AATT 6 cut(s) 103, 338, 430, 469, 838, 850
TatI WGTACW 1 cut(s) 552
TfiI GAWTC 5 cut(s) 19, 44, 74, 133, 754
Tru1I TTAA 4 cut(s) 788, 827, 837, 849
Tru9I TTAA 4 cut(s) 788, 827, 837, 849
TscAI CASTG 5 cut(s) 135, 157, 202, 305, 442
TseFI GTSAC 3 cut(s) 406, 449, 530
TseI GCWGC 4 cut(s) 240, 288, 558, 581
Tsp45I GTSAC 3 cut(s) 406, 449, 530
TspGWI ACGGA 2 cut(s) 470, 747
TspRI CASTG 5 cut(s) 135, 157, 202, 305, 442
VneI GTGCAC 1 cut(s) 733
VpaK11BI GGWCC 2 cut(s) 59, 457
VspI ATTAAT 2 cut(s) 837, 849
XapI RAATTY 1 cut(s) 338
XceI RCATGY 1 cut(s) 630
XcmI CCANNNNNNNNNTGG 1 cut(s) 281
XspI CTAG 2 cut(s) 81, 485
ZrmI AGTACT 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.