FvH4_2g26400

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011929
Physical Location & Seq
Reverse (-)
21203446 .. 21205204
1759 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26400.t1

Sequence Viewer

Length: 861 bp
ATGGGAACAGATATCAATGTGTTCTGGTTACCAGTTTTATTGGTTTCTATGATCATTATTTCATCAGGGCCAAAGTTATCCGAGTCTGCTAGGATTTTCACCATAGTAAACAATTGCAAAGAGACAATCTGGCCTGCAGTGTTTCCTGGGGAGAACTTCAATGGTGGTGGTTTTCCACTAAAACCAGGCCAGGCCATTGTATTCACAGCTCCGGTTAGCTGGTCTGGCCGGATATGGGGTCGCACCGGCTGCAACTTTGACAAAAATGGCAATGGAACATGCCAGACTGGGGCCTGTGGCAGTAGCCTCAAGTGTGGAGCCTCAGGAAAACCCCCAGCATCACTTGCTGAATTTACACTAGCACAGCCAGATTTTTATGATGTTAGTCTTGTTGATGGGTTTAACTTGCCATTGACTATCACACCTGTTAATGGCTCGGGAAAATGCGGTGCTTCTGGTTGTGATGGGGACCTGAGGACTACTTGCCCCAACGAATTATCTGTGAAATCAAATGGGAAGACTATTGGCTGCCGGAGCGCCTGTGATGTGTACAACACTGATGAGTATTGTTGCAGAGGGGTTTATGGAAACGCAGCAGTATGTCAACCCACATATTATTCCAAGAAGTTCAAAGAAGCATGCCCTACTGCGTATAGTTACGCGTATGATGATCCATCCAGTATTTTCACTTGCACAGGCACTGATTATATCGTCGCATTCTGCTCATCCAGGAAGCAACCGGTGTGTACATACCATAACAACAAGTCTGTCTGCAGTGGATCAATGGGTTTGAAGTCATCACGATCGTGGGCGACAATTCTTGTAATGCTACTGGTGATTAACTTATGGATCATTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

287

Amino Acids

30.62

Weight (kDa)

8.23

Isoelectric Point (pI)

34.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 37 - 242 5.1e-77 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77700 AT1G77700 AT1G77700
fragaria_vesca FvH4_2g26400
malus_domestica MD08G1169300.v1.1 MD15G1355700.v1.1 MD15G1355800.v1.1
prunus_persica Prupe.1G503200_v2.0.a1
pyrus_communis pycom08g14470 pycom15g31790
rosa_chinensis RchiOBHm_Chr6g0294961
rosa_laevigata RLG00000011825
rosa_roxburghii Rroxscaffold_7G00172790
rosa_rugosa Rorug06G0248900
rosa_samantha Rh6AG361900 Rh6BG369400 Rh6CG375900 Rh6DG362500
rosa_wichuraiana Rw6G031580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 662
AciI CCGC 1 cut(s) 447
AclWI GGATC 3 cut(s) 665, 787, 857
AcoI YGGCCR 1 cut(s) 226
AcsI RAATTY 1 cut(s) 350
AfaI GTAC 2 cut(s) 551, 748
AfiI CCNNNNNNNGG 3 cut(s) 235, 289, 431
AflIII ACRYGT 1 cut(s) 660
AgeI ACCGGT 1 cut(s) 739
AgsI TTSAA 3 cut(s) 160, 631, 793
AjnI CCWGG 4 cut(s) 145, 184, 189, 728
AleI CACNNNNGTG 1 cut(s) 805
AluBI AGCT 2 cut(s) 209, 219
AluI AGCT 2 cut(s) 209, 219
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 3 cut(s) 665, 787, 857
AlwNI CAGNNNCTG 1 cut(s) 701
Ama87I CYCGRG 1 cut(s) 436
AoxI GGCC 6 cut(s) 68, 131, 187, 192, 226, 291
ApeKI GCWGC 3 cut(s) 249, 528, 593
ApoI RAATTY 1 cut(s) 350
AsiGI ACCGGT 1 cut(s) 739
AspLEI GCGC 1 cut(s) 539
AspS9I GGNCC 3 cut(s) 68, 291, 469
AsuHPI GGTGA 2 cut(s) 91, 847
AvaI CYCGRG 1 cut(s) 436
AvaII GGWCC 1 cut(s) 469
AxyI CCTNAGG 2 cut(s) 322, 473
BbsI GAAGAC 1 cut(s) 524
BbvI GCAGC 3 cut(s) 236, 515, 605
BccI CCATC 3 cut(s) 389, 458, 682
BciT130I CCWGG 4 cut(s) 147, 186, 191, 730
BclI TGATCA 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 2 cut(s) 90, 359
BfmI CTRYAG 2 cut(s) 135, 772
BfoI RGCGCY 1 cut(s) 540
BisI GCNGC 3 cut(s) 250, 529, 594
BlsI GCNGC 3 cut(s) 251, 530, 595
Bme1390I CCNGG 4 cut(s) 147, 186, 191, 730
Bme18I GGWCC 1 cut(s) 469
BmeT110I CYCGRG 1 cut(s) 436
BmgT120I GGNCC 3 cut(s) 68, 291, 469
BmiI GGNNCC 3 cut(s) 292, 319, 470
BmrFI CCNGG 4 cut(s) 147, 186, 191, 730
BmrI ACTGGG 1 cut(s) 297
BmsI GCATC 1 cut(s) 347
BmuI ACTGGG 1 cut(s) 297
BpiI GAAGAC 1 cut(s) 524
BpuEI CTTGAG 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 146
BsaWI WCCGGW 2 cut(s) 211, 739
BsaXI ACNNNNNCTCC 2 cut(s) 526, 556
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 289, 431
Bse118I RCCGGY 2 cut(s) 245, 739
Bse1I ACTGG 4 cut(s) 32, 292, 678, 837
Bse21I CCTNAGG 2 cut(s) 322, 473
Bse3DI GCAATG 1 cut(s) 277
BseBI CCWGG 4 cut(s) 147, 186, 191, 730
BseDI CCNNGG 1 cut(s) 146
BseGI GGATG 2 cut(s) 674, 725
BseLI CCNNNNNNNGG 3 cut(s) 235, 289, 431
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 2 cut(s) 336, 464
BseNI ACTGG 4 cut(s) 32, 292, 678, 837
BseXI GCAGC 3 cut(s) 236, 515, 605
BseYI CCCAGC 1 cut(s) 334
Bsh1236I CGCG 1 cut(s) 662
Bsh1285I CGRYCG 1 cut(s) 806
BshFI GGCC 6 cut(s) 70, 133, 189, 194, 228, 293
BshTI ACCGGT 1 cut(s) 739
BsiEI CGRYCG 1 cut(s) 806
BsiHKCI CYCGRG 1 cut(s) 436
BsiSI CCGG 5 cut(s) 212, 229, 246, 532, 740
BslFI GGGAC 1 cut(s) 482
BslI CCNNNNNNNGG 3 cut(s) 235, 289, 431
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 482
BsmI GAATGC 1 cut(s) 716
BsnI GGCC 6 cut(s) 70, 133, 189, 194, 228, 293
BsoBI CYCGRG 1 cut(s) 436
Bsp1407I TGTACA 2 cut(s) 549, 746
Bsp143I GATC 5 cut(s) 51, 670, 779, 803, 849
BspACI CCGC 1 cut(s) 447
BspANI GGCC 6 cut(s) 70, 133, 189, 194, 228, 293
BspCNI CTCAG 2 cut(s) 335, 465
BspFNI CGCG 1 cut(s) 662
BspLI GGNNCC 3 cut(s) 292, 319, 470
BspMAI CTGCAG 2 cut(s) 139, 776
BspPI GGATC 3 cut(s) 665, 787, 857
BsrDI GCAATG 1 cut(s) 277
BsrFI RCCGGY 2 cut(s) 245, 739
BsrGI TGTACA 2 cut(s) 549, 746
BsrI ACTGG 4 cut(s) 32, 292, 678, 837
BssAI RCCGGY 2 cut(s) 245, 739
BssECI CCNNGG 1 cut(s) 146
BssMI GATC 5 cut(s) 51, 670, 779, 803, 849
Bst2UI CCWGG 4 cut(s) 147, 186, 191, 730
BstAPI GCANNNNNTGC 2 cut(s) 249, 344
BstAUI TGTACA 2 cut(s) 549, 746
BstC8I GCNNGC 2 cut(s) 135, 640
BstDEI CTNAG 2 cut(s) 322, 473
BstEII GGTNACC 1 cut(s) 27
BstF5I GGATG 2 cut(s) 674, 725
BstFNI CGCG 1 cut(s) 662
BstH2I RGCGCY 1 cut(s) 540
BstHHI GCGC 1 cut(s) 539
BstKTI GATC 5 cut(s) 54, 673, 782, 806, 852
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 5 cut(s) 51, 670, 779, 803, 849
BstMCI CGRYCG 1 cut(s) 806
BstMWI GCNNNNNNNGC 4 cut(s) 225, 249, 344, 534
BstNI CCWGG 4 cut(s) 147, 186, 191, 730
BstNSI RCATGY 2 cut(s) 282, 642
BstPI GGTNACC 1 cut(s) 27
BstSCI CCNGG 4 cut(s) 145, 184, 189, 728
BstSFI CTRYAG 2 cut(s) 135, 772
BstUI CGCG 1 cut(s) 662
BstV1I GCAGC 3 cut(s) 236, 515, 605
BstV2I GAAGAC 1 cut(s) 524
Bsu36I CCTNAGG 2 cut(s) 322, 473
BsuRI GGCC 6 cut(s) 70, 133, 189, 194, 228, 293
BtsCI GGATG 2 cut(s) 674, 725
BtsI GCAGTG 2 cut(s) 144, 781
BtsIMutI CAGTG 4 cut(s) 144, 555, 699, 781
Cac8I GCNNGC 2 cut(s) 135, 640
CaiI CAGNNNCTG 1 cut(s) 701
CfoI GCGC 1 cut(s) 539
Cfr10I RCCGGY 2 cut(s) 245, 739
Cfr13I GGNCC 3 cut(s) 68, 291, 469
Csp6I GTAC 2 cut(s) 550, 747
CspAI ACCGGT 1 cut(s) 739
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviAII CATG 2 cut(s) 279, 639
CviQI GTAC 2 cut(s) 550, 747
DdeI CTNAG 2 cut(s) 322, 473
DpnI GATC 5 cut(s) 53, 672, 781, 805, 851
DpnII GATC 5 cut(s) 51, 670, 779, 803, 849
EaeI YGGCCR 1 cut(s) 226
Eco32I GATATC 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 469
Eco81I CCTNAGG 2 cut(s) 322, 473
Eco88I CYCGRG 1 cut(s) 436
Eco91I GGTNACC 1 cut(s) 27
EcoO109I RGGNCCY 2 cut(s) 291, 469
EcoO65I GGTNACC 1 cut(s) 27
EcoRII CCWGG 4 cut(s) 145, 184, 189, 728
EcoRV GATATC 1 cut(s) 13
FaeI CATG 2 cut(s) 282, 642
FaqI GGGAC 1 cut(s) 482
FatI CATG 2 cut(s) 278, 638
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 3 cut(s) 250, 529, 594
FokI GGATG 2 cut(s) 661, 712
Fsp4HI GCNGC 3 cut(s) 250, 529, 594
FspBI CTAG 2 cut(s) 90, 359
GlaI GCGC 1 cut(s) 538
GluI GCNGC 3 cut(s) 250, 529, 594
GsaI CCCAGC 1 cut(s) 338
HaeII RGCGCY 1 cut(s) 540
HaeIII GGCC 6 cut(s) 70, 133, 189, 194, 228, 293
HapII CCGG 5 cut(s) 212, 229, 246, 532, 740
HhaI GCGC 1 cut(s) 539
Hin1II CATG 2 cut(s) 282, 642
Hin6I GCGC 1 cut(s) 537
HinP1I GCGC 1 cut(s) 537
HincII GTYRAC 1 cut(s) 605
HindII GTYRAC 1 cut(s) 605
HinfI GANTC 1 cut(s) 83
HpaII CCGG 5 cut(s) 212, 229, 246, 532, 740
HphI GGTGA 2 cut(s) 91, 847
Hpy166II GTNNAC 4 cut(s) 109, 550, 605, 747
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 3 cut(s) 324, 438, 801
Hpy8I GTNNAC 4 cut(s) 109, 550, 605, 747
Hpy99I CGWCG 1 cut(s) 716
HpyCH4V TGCA 6 cut(s) 117, 137, 252, 573, 693, 774
HpyF10VI GCNNNNNNNGC 4 cut(s) 225, 249, 344, 534
HpyF3I CTNAG 2 cut(s) 322, 473
Hsp92II CATG 2 cut(s) 282, 642
HspAI GCGC 1 cut(s) 537
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 5 cut(s) 51, 670, 779, 803, 849
LmnI GCTCC 3 cut(s) 214, 317, 534
Lsp1109I GCAGC 3 cut(s) 236, 515, 605
LweI GCATC 1 cut(s) 347
MaeI CTAG 2 cut(s) 90, 359
MaeIII GTNAC 2 cut(s) 27, 656
MalI GATC 5 cut(s) 53, 672, 781, 805, 851
MboI GATC 5 cut(s) 51, 670, 779, 803, 849
MboII GAAGA 1 cut(s) 529
MfeI CAATTG 1 cut(s) 112
MluCI AATT 4 cut(s) 112, 350, 494, 816
MluI ACGCGT 1 cut(s) 660
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 4 cut(s) 317, 331, 468, 569
MseI TTAA 3 cut(s) 402, 429, 840
MslI CAYNNNNRTG 1 cut(s) 805
MspI CCGG 5 cut(s) 212, 229, 246, 532, 740
MspR9I CCNGG 4 cut(s) 147, 186, 191, 730
MunI CAATTG 1 cut(s) 112
Mva1269I GAATGC 1 cut(s) 716
MvaI CCWGG 4 cut(s) 147, 186, 191, 730
MvnI CGCG 1 cut(s) 662
MwoI GCNNNNNNNGC 4 cut(s) 225, 249, 344, 534
NdeII GATC 5 cut(s) 51, 670, 779, 803, 849
NlaIII CATG 2 cut(s) 282, 642
NlaIV GGNNCC 3 cut(s) 292, 319, 470
NspI RCATGY 2 cut(s) 282, 642
OliI CACNNNNGTG 1 cut(s) 805
PaeI GCATGC 1 cut(s) 642
PctI GAATGC 1 cut(s) 716
PfoI TCCNGGA 1 cut(s) 728
PinAI ACCGGT 1 cut(s) 739
PkrI GCNGC 3 cut(s) 251, 530, 595
Ple19I CGATCG 1 cut(s) 806
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PpuMI RGGWCCY 1 cut(s) 469
Psp5II RGGWCCY 1 cut(s) 469
Psp6I CCWGG 4 cut(s) 145, 184, 189, 728
PspEI GGTNACC 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 334
PspGI CCWGG 4 cut(s) 145, 184, 189, 728
PspN4I GGNNCC 3 cut(s) 292, 319, 470
PspPI GGNCC 3 cut(s) 68, 291, 469
PspPPI RGGWCCY 1 cut(s) 469
PstI CTGCAG 2 cut(s) 139, 776
PstNI CAGNNNCTG 1 cut(s) 701
PvuI CGATCG 1 cut(s) 806
RsaI GTAC 2 cut(s) 551, 748
RsaNI GTAC 2 cut(s) 550, 747
RseI CAYNNNNRTG 1 cut(s) 805
SaqAI TTAA 3 cut(s) 402, 429, 840
SatI GCNGC 3 cut(s) 250, 529, 594
Sau3AI GATC 5 cut(s) 51, 670, 779, 803, 849
Sau96I GGNCC 3 cut(s) 68, 291, 469
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 4 cut(s) 147, 186, 191, 730
SetI ASST 4 cut(s) 211, 221, 427, 474
SfaNI GCATC 1 cut(s) 347
SfcI CTRYAG 2 cut(s) 135, 772
SinI GGWCC 1 cut(s) 469
SmiMI CAYNNNNRTG 1 cut(s) 805
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
SphI GCATGC 1 cut(s) 642
Sse9I AATT 4 cut(s) 112, 350, 494, 816
SsiI CCGC 1 cut(s) 447
SspMI CTAG 2 cut(s) 90, 359
StyD4I CCNGG 4 cut(s) 145, 184, 189, 728
TasI AATT 4 cut(s) 112, 350, 494, 816
TatI WGTACW 2 cut(s) 549, 746
Tru1I TTAA 3 cut(s) 402, 429, 840
Tru9I TTAA 3 cut(s) 402, 429, 840
TscAI CASTG 4 cut(s) 144, 562, 706, 781
TseI GCWGC 3 cut(s) 249, 528, 593
TspDTI ATGAA 1 cut(s) 51
TspRI CASTG 4 cut(s) 144, 562, 706, 781
VpaK11BI GGWCC 1 cut(s) 469
XapI RAATTY 1 cut(s) 350
XceI RCATGY 2 cut(s) 282, 642
XspI CTAG 2 cut(s) 90, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.