Rh6CG375900

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0011929
Physical Location & Seq
Reverse (-)
56232394 .. 56234089
1696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG375900.1

Sequence Viewer

Length: 753 bp
ATGGCAACAGAATTCAAAGTGTTCTGGTTACCGGTTTTATTGGTTTCTATGATCACTGTTTCATCAGGACCCAAGTTGTCCGAGTCTGCTAGAATTTTCACCATTATAAACAATTGCAAAGAGACAATCTGGCCTGCAGTATTTCCTGGGGAGAACTTCAACGGTGGTGGCTTTCCACTAAAATCAGGCCAGTCCATTGTATTCACAGCTCCGGTTAGCTGGTCAGGCCGGATATGGGGTCGTACCGGCTGCAACTTTGACAAAAATGGCAATGGAACATGCCAGACTGGGGCATGTGGCACCAGCCTCAAGTGTGGAGGCTCAGGAAACACCCCAGCATCACTTGCTGAATTTACACTTGCGCAGCCGGATTTTTATGATGTTAGTCTTGTTGATGGGTTTAACTTGCCATTGACTATCACACCTGTTAATGGTTCGGGAAATTGCAGTGCTTCTGGTTGTGATGGGGACCTGAGGACTACTTGCCCGAATGAGTTGTCTGTGAAATCAAATGGGAAGACTGTTGGCTGCCGCAGCGCCTGCGATGTGTACAACACTGATGAGTATTGTTGCAGAGGGGTATATGGAAACGCTGCTGTATGTAAACCCACGTATTATTCCAAGAAGTTCAAAGAAGCATGCCCTACTGCATATAGTTACGCGTATGATGATCCATCCAGTATTTTCACTTGCTCAGGCACTGATTATATCGTCGCATTCTGCTCATCCAGGTTTGCCATTACCTACTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

250

Amino Acids

26.69

Weight (kDa)

6.27

Isoelectric Point (pI)

28.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 37 - 242 3.4e-77 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77700 AT1G77700 AT1G77700
fragaria_vesca FvH4_2g26400
malus_domestica MD08G1169300.v1.1 MD15G1355700.v1.1 MD15G1355800.v1.1
prunus_persica Prupe.1G503200_v2.0.a1
pyrus_communis pycom08g14470 pycom15g31790
rosa_chinensis RchiOBHm_Chr6g0294961
rosa_laevigata RLG00000011825
rosa_roxburghii Rroxscaffold_7G00172790
rosa_rugosa Rorug06G0248900
rosa_samantha Rh6AG361900 Rh6BG369400 Rh6CG375900 Rh6DG362500
rosa_wichuraiana Rw6G031580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 107
Acc16I TGCGCA 1 cut(s) 363
AccB1I GGYRCC 1 cut(s) 299
AccII CGCG 1 cut(s) 662
AciI CCGC 1 cut(s) 532
AclWI GGATC 1 cut(s) 665
AcsI RAATTY 3 cut(s) 11, 93, 350
AfaI GTAC 2 cut(s) 244, 551
AfiI CCNNNNNNNGG 3 cut(s) 235, 289, 431
AflIII ACRYGT 1 cut(s) 660
AgeI ACCGGT 1 cut(s) 31
AgsI TTSAA 3 cut(s) 16, 160, 631
AjnI CCWGG 2 cut(s) 145, 728
AluBI AGCT 2 cut(s) 209, 219
AluI AGCT 2 cut(s) 209, 219
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 1 cut(s) 665
AlwNI CAGNNNCTG 2 cut(s) 540, 701
AoxI GGCC 3 cut(s) 131, 187, 226
ApeKI GCWGC 5 cut(s) 249, 364, 528, 534, 593
ApoI RAATTY 3 cut(s) 11, 93, 350
ArsI GACNNNNNNTTYG 2 cut(s) 482, 514
AsiGI ACCGGT 1 cut(s) 31
AspLEI GCGC 2 cut(s) 364, 539
AspS9I GGNCC 2 cut(s) 68, 469
AsuHPI GGTGA 1 cut(s) 91
AvaII GGWCC 2 cut(s) 68, 469
AxyI CCTNAGG 1 cut(s) 473
BanI GGYRCC 1 cut(s) 299
BbsI GAAGAC 1 cut(s) 524
BbvI GCAGC 5 cut(s) 236, 376, 515, 546, 580
BccI CCATC 3 cut(s) 389, 458, 682
BciT130I CCWGG 2 cut(s) 147, 730
BclI TGATCA 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 1 cut(s) 90
BfmI CTRYAG 1 cut(s) 135
BfoI RGCGCY 1 cut(s) 540
BisI GCNGC 6 cut(s) 250, 365, 529, 532, 535, 594
BlsI GCNGC 6 cut(s) 251, 366, 530, 533, 536, 595
Bme1390I CCNGG 2 cut(s) 147, 730
Bme18I GGWCC 2 cut(s) 68, 469
BmgT120I GGNCC 2 cut(s) 68, 469
BmiI GGNNCC 3 cut(s) 70, 301, 470
BmrFI CCNGG 2 cut(s) 147, 730
BmrI ACTGGG 1 cut(s) 297
BmsI GCATC 1 cut(s) 347
BmuI ACTGGG 1 cut(s) 297
BpiI GAAGAC 1 cut(s) 524
Bpu10I CCTNAGC 2 cut(s) 322, 694
BpuEI CTTGAG 1 cut(s) 293
BsaAI YACGTR 1 cut(s) 612
BsaJI CCNNGG 1 cut(s) 146
BsaWI WCCGGW 2 cut(s) 31, 211
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 289, 431
Bse118I RCCGGY 2 cut(s) 31, 245
Bse1I ACTGG 3 cut(s) 190, 292, 678
Bse21I CCTNAGG 1 cut(s) 473
Bse3DI GCAATG 1 cut(s) 277
BseBI CCWGG 2 cut(s) 147, 730
BseDI CCNNGG 1 cut(s) 146
BseGI GGATG 2 cut(s) 674, 725
BseLI CCNNNNNNNGG 3 cut(s) 235, 289, 431
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 3 cut(s) 336, 464, 708
BseNI ACTGG 3 cut(s) 190, 292, 678
BseXI GCAGC 5 cut(s) 236, 376, 515, 546, 580
BseYI CCCAGC 1 cut(s) 334
Bsh1236I CGCG 1 cut(s) 662
BshFI GGCC 3 cut(s) 133, 189, 228
BshNI GGYRCC 1 cut(s) 299
BshTI ACCGGT 1 cut(s) 31
BsiSI CCGG 5 cut(s) 32, 212, 229, 246, 368
BslFI GGGAC 1 cut(s) 482
BslI CCNNNNNNNGG 3 cut(s) 235, 289, 431
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 482
BsmI GAATGC 1 cut(s) 716
BsnI GGCC 3 cut(s) 133, 189, 228
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 2 cut(s) 51, 670
BspACI CCGC 1 cut(s) 532
BspANI GGCC 3 cut(s) 133, 189, 228
BspCNI CTCAG 3 cut(s) 335, 465, 707
BspFNI CGCG 1 cut(s) 662
BspLI GGNNCC 3 cut(s) 70, 301, 470
BspMAI CTGCAG 1 cut(s) 139
BspPI GGATC 1 cut(s) 665
BspT107I GGYRCC 1 cut(s) 299
BsrDI GCAATG 1 cut(s) 277
BsrFI RCCGGY 2 cut(s) 31, 245
BsrGI TGTACA 1 cut(s) 549
BsrI ACTGG 3 cut(s) 190, 292, 678
BssAI RCCGGY 2 cut(s) 31, 245
BssECI CCNNGG 1 cut(s) 146
BssMI GATC 2 cut(s) 51, 670
Bst2UI CCWGG 2 cut(s) 147, 730
Bst4CI ACNGT 3 cut(s) 58, 164, 523
BstAPI GCANNNNNTGC 2 cut(s) 344, 540
BstAUI TGTACA 1 cut(s) 549
BstBAI YACGTR 1 cut(s) 612
BstC8I GCNNGC 3 cut(s) 135, 541, 640
BstDEI CTNAG 3 cut(s) 322, 473, 694
BstEII GGTNACC 1 cut(s) 27
BstF5I GGATG 2 cut(s) 674, 725
BstFNI CGCG 1 cut(s) 662
BstH2I RGCGCY 1 cut(s) 540
BstHHI GCGC 2 cut(s) 364, 539
BstKTI GATC 2 cut(s) 54, 673
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 2 cut(s) 51, 670
BstMWI GCNNNNNNNGC 4 cut(s) 225, 344, 534, 540
BstNI CCWGG 2 cut(s) 147, 730
BstNSI RCATGY 3 cut(s) 282, 297, 642
BstPI GGTNACC 1 cut(s) 27
BstSCI CCNGG 2 cut(s) 145, 728
BstSFI CTRYAG 1 cut(s) 135
BstUI CGCG 1 cut(s) 662
BstV1I GCAGC 5 cut(s) 236, 376, 515, 546, 580
BstV2I GAAGAC 1 cut(s) 524
Bsu36I CCTNAGG 1 cut(s) 473
BsuRI GGCC 3 cut(s) 133, 189, 228
BtgZI GCGATG 1 cut(s) 558
BtsCI GGATG 2 cut(s) 674, 725
BtsI GCAGTG 1 cut(s) 454
BtsIMutI CAGTG 4 cut(s) 54, 454, 555, 699
Cac8I GCNNGC 3 cut(s) 135, 541, 640
CaiI CAGNNNCTG 2 cut(s) 540, 701
CfoI GCGC 2 cut(s) 364, 539
Cfr10I RCCGGY 2 cut(s) 31, 245
Cfr13I GGNCC 2 cut(s) 68, 469
Csp6I GTAC 2 cut(s) 243, 550
CspAI ACCGGT 1 cut(s) 31
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviAII CATG 3 cut(s) 279, 294, 639
CviQI GTAC 2 cut(s) 243, 550
DdeI CTNAG 3 cut(s) 322, 473, 694
DpnI GATC 2 cut(s) 53, 672
DpnII GATC 2 cut(s) 51, 670
Eco47I GGWCC 2 cut(s) 68, 469
Eco81I CCTNAGG 1 cut(s) 473
Eco91I GGTNACC 1 cut(s) 27
EcoO109I RGGNCCY 2 cut(s) 68, 469
EcoO65I GGTNACC 1 cut(s) 27
EcoRI GAATTC 1 cut(s) 11
EcoRII CCWGG 2 cut(s) 145, 728
FaeI CATG 3 cut(s) 282, 297, 642
FaqI GGGAC 1 cut(s) 482
FatI CATG 3 cut(s) 278, 293, 638
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 6 cut(s) 250, 365, 529, 532, 535, 594
FokI GGATG 2 cut(s) 661, 712
Fsp4HI GCNGC 6 cut(s) 250, 365, 529, 532, 535, 594
FspBI CTAG 1 cut(s) 90
FspI TGCGCA 1 cut(s) 363
GlaI GCGC 2 cut(s) 363, 538
GluI GCNGC 6 cut(s) 250, 365, 529, 532, 535, 594
GsaI CCCAGC 1 cut(s) 338
HaeII RGCGCY 1 cut(s) 540
HaeIII GGCC 3 cut(s) 133, 189, 228
HapII CCGG 5 cut(s) 32, 212, 229, 246, 368
HhaI GCGC 2 cut(s) 364, 539
Hin1II CATG 3 cut(s) 282, 297, 642
Hin6I GCGC 2 cut(s) 362, 537
HinP1I GCGC 2 cut(s) 362, 537
HinfI GANTC 1 cut(s) 83
HpaII CCGG 5 cut(s) 32, 212, 229, 246, 368
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 2 cut(s) 550, 605
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 3 cut(s) 66, 324, 438
Hpy8I GTNNAC 2 cut(s) 550, 605
Hpy99I CGWCG 1 cut(s) 716
HpyCH4III ACNGT 3 cut(s) 58, 164, 523
HpyCH4IV ACGT 1 cut(s) 611
HpyCH4V TGCA 6 cut(s) 117, 137, 252, 447, 573, 650
HpyF10VI GCNNNNNNNGC 4 cut(s) 225, 344, 534, 540
HpyF3I CTNAG 3 cut(s) 322, 473, 694
HpySE526I ACGT 1 cut(s) 611
Hsp92II CATG 3 cut(s) 282, 297, 642
HspAI GCGC 2 cut(s) 362, 537
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 2 cut(s) 51, 670
LmnI GCTCC 1 cut(s) 214
Lsp1109I GCAGC 5 cut(s) 236, 376, 515, 546, 580
LweI GCATC 1 cut(s) 347
MaeI CTAG 1 cut(s) 90
MaeII ACGT 1 cut(s) 611
MaeIII GTNAC 2 cut(s) 27, 656
MalI GATC 2 cut(s) 53, 672
MboI GATC 2 cut(s) 51, 670
MboII GAAGA 1 cut(s) 529
MfeI CAATTG 1 cut(s) 112
MluCI AATT 5 cut(s) 11, 93, 112, 350, 442
MluI ACGCGT 1 cut(s) 660
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 4 cut(s) 311, 317, 468, 569
MseI TTAA 3 cut(s) 402, 429, 751
MspI CCGG 5 cut(s) 32, 212, 229, 246, 368
MspR9I CCNGG 2 cut(s) 147, 730
MunI CAATTG 1 cut(s) 112
Mva1269I GAATGC 1 cut(s) 716
MvaI CCWGG 2 cut(s) 147, 730
MvnI CGCG 1 cut(s) 662
MwoI GCNNNNNNNGC 4 cut(s) 225, 344, 534, 540
NdeII GATC 2 cut(s) 51, 670
NlaIII CATG 3 cut(s) 282, 297, 642
NlaIV GGNNCC 3 cut(s) 70, 301, 470
NsbI TGCGCA 1 cut(s) 363
NspI RCATGY 3 cut(s) 282, 297, 642
PaeI GCATGC 1 cut(s) 642
PctI GAATGC 1 cut(s) 716
PinAI ACCGGT 1 cut(s) 31
PkrI GCNGC 6 cut(s) 251, 366, 530, 533, 536, 595
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Ppu21I YACGTR 1 cut(s) 612
PpuMI RGGWCCY 2 cut(s) 68, 469
PsiI TTATAA 1 cut(s) 107
Psp5II RGGWCCY 2 cut(s) 68, 469
Psp6I CCWGG 2 cut(s) 145, 728
PspEI GGTNACC 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 334
PspGI CCWGG 2 cut(s) 145, 728
PspN4I GGNNCC 3 cut(s) 70, 301, 470
PspPI GGNCC 2 cut(s) 68, 469
PspPPI RGGWCCY 2 cut(s) 68, 469
PstI CTGCAG 1 cut(s) 139
PstNI CAGNNNCTG 2 cut(s) 540, 701
RsaI GTAC 2 cut(s) 244, 551
RsaNI GTAC 2 cut(s) 243, 550
SaqAI TTAA 3 cut(s) 402, 429, 751
SatI GCNGC 6 cut(s) 250, 365, 529, 532, 535, 594
Sau3AI GATC 2 cut(s) 51, 670
Sau96I GGNCC 2 cut(s) 68, 469
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 2 cut(s) 147, 730
SetI ASST 7 cut(s) 211, 221, 427, 474, 614, 734, 746
SfaNI GCATC 1 cut(s) 347
SfcI CTRYAG 1 cut(s) 135
SinI GGWCC 2 cut(s) 68, 469
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
SphI GCATGC 1 cut(s) 642
Sse9I AATT 5 cut(s) 11, 93, 112, 350, 442
SsiI CCGC 1 cut(s) 532
SspMI CTAG 1 cut(s) 90
StyD4I CCNGG 2 cut(s) 145, 728
TaaI ACNGT 3 cut(s) 58, 164, 523
TaiI ACGT 1 cut(s) 614
TasI AATT 5 cut(s) 11, 93, 112, 350, 442
TatI WGTACW 1 cut(s) 549
TauI GCSGC 1 cut(s) 534
Tru1I TTAA 3 cut(s) 402, 429, 751
Tru9I TTAA 3 cut(s) 402, 429, 751
TscAI CASTG 4 cut(s) 61, 454, 562, 706
TseI GCWGC 5 cut(s) 249, 364, 528, 534, 593
TspDTI ATGAA 1 cut(s) 51
TspRI CASTG 4 cut(s) 61, 454, 562, 706
VpaK11BI GGWCC 2 cut(s) 68, 469
XapI RAATTY 3 cut(s) 11, 93, 350
XceI RCATGY 3 cut(s) 282, 297, 642
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.