MD15G1355700.v1.1

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011929
Physical Location & Seq
Forward (+)
42871235 .. 42872300
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1355700.v1.1.491

Sequence Viewer

Length: 525 bp
ATGTTTGAAGGACCAAAGTTATCCGAGTCTGCTAGAACTTTCACCATTATAAACAATTGCAAAGAGACAGTCTGGCCTGCAGTTACCCCTGGGGACAACTTATGGTGGTGGCTTTGTGCTAAAACCAAGCCAGTCAATGGTGTTCACTGCCCCGCTGTGAAGGCCAATGGGAAGAAAGTTGGATGCAGAAGTGCGTGTGATGTGTTCGACACAGATGAGTACTGCTGCCGAGGGAGTTATGGCAATGCTGTTGTGTGTAAACCCACATATTATTCCAAGAAGTTCAAAGAAGCATGCCCTACTGCCTACAGTTATGCTTATGATGATCTGAGCAGTATCTTTACTTGCTCAGGCACAAATTATGTCGTTGCTTTCTGCTCAACCAGGAAGCAACAGGTGTGCACATATCACCACCACAAGCTTGTGTGTGGTAATGGATCTGGATCAGTAGGTTCAAAGTCACTGAGATTGTGGGCTGTGATGATTGGATTGTTGATGATGATTAATCAATGGATTAATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

175

Amino Acids

19.38

Weight (kDa)

8.86

Isoelectric Point (pI)

28.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 49 - 127 5.9e-25 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77700 AT1G77700 AT1G77700
fragaria_vesca FvH4_2g26400
malus_domestica MD08G1169300.v1.1 MD15G1355700.v1.1 MD15G1355800.v1.1
prunus_persica Prupe.1G503200_v2.0.a1
pyrus_communis pycom08g14470 pycom15g31790
rosa_chinensis RchiOBHm_Chr6g0294961
rosa_laevigata RLG00000011825
rosa_roxburghii Rroxscaffold_7G00172790
rosa_rugosa Rorug06G0248900
rosa_samantha Rh6AG361900 Rh6BG369400 Rh6CG375900 Rh6DG362500
rosa_wichuraiana Rw6G031580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 50
AccB7I CCANNNNNTGG 1 cut(s) 137
AciI CCGC 1 cut(s) 153
AclWI GGATC 2 cut(s) 445, 451
AfaI GTAC 1 cut(s) 221
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 3 cut(s) 8, 286, 456
AjnI CCWGG 2 cut(s) 88, 383
AluBI AGCT 1 cut(s) 421
AluI AGCT 1 cut(s) 421
Alw21I GWGCWC 1 cut(s) 404
Alw26I GTCTC 1 cut(s) 59
Alw44I GTGCAC 1 cut(s) 400
AlwI GGATC 2 cut(s) 445, 451
AoxI GGCC 2 cut(s) 74, 162
ApaLI GTGCAC 1 cut(s) 400
ApeKI GCWGC 1 cut(s) 225
ArsI GACNNNNNNTTYG 2 cut(s) 54, 86
AseI ATTAAT 2 cut(s) 504, 516
AspS9I GGNCC 1 cut(s) 11
AsuHPI GGTGA 2 cut(s) 34, 401
AvaII GGWCC 1 cut(s) 11
BaeGI GKGCMC 1 cut(s) 404
Bbv12I GWGCWC 1 cut(s) 404
BbvI GCAGC 1 cut(s) 212
BciT130I CCWGG 2 cut(s) 90, 385
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 1 cut(s) 33
BfmI CTRYAG 2 cut(s) 78, 307
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
BmcAI AGTACT 1 cut(s) 221
Bme1390I CCNGG 2 cut(s) 90, 385
Bme18I GGWCC 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 11
BmrFI CCNGG 2 cut(s) 90, 385
BmsI GCATC 1 cut(s) 173
Bpu10I CCTNAGC 1 cut(s) 349
BsaBI GATNNNNATC 1 cut(s) 442
BsaJI CCNNGG 3 cut(s) 88, 89, 229
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 131
Bse3DI GCAATG 1 cut(s) 250
Bse8I GATNNNNATC 1 cut(s) 442
BseBI CCWGG 2 cut(s) 90, 385
BseDI CCNNGG 3 cut(s) 88, 89, 229
BseGI GGATG 1 cut(s) 188
BseJI GATNNNNATC 1 cut(s) 442
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMI GCAATG 1 cut(s) 250
BseMII CTCAG 3 cut(s) 320, 363, 455
BseNI ACTGG 1 cut(s) 131
BseSI GKGCMC 1 cut(s) 404
BseXI GCAGC 1 cut(s) 212
BshFI GGCC 2 cut(s) 76, 164
BsiHKAI GWGCWC 1 cut(s) 404
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 2 cut(s) 76, 164
Bsp1286I GDGCHC 1 cut(s) 404
Bsp143I GATC 3 cut(s) 325, 437, 443
BspACI CCGC 1 cut(s) 153
BspANI GGCC 2 cut(s) 76, 164
BspCNI CTCAG 3 cut(s) 321, 362, 456
BspMAI CTGCAG 1 cut(s) 82
BspPI GGATC 2 cut(s) 445, 451
BsrDI GCAATG 1 cut(s) 250
BsrI ACTGG 1 cut(s) 131
BssECI CCNNGG 3 cut(s) 88, 89, 229
BssMI GATC 3 cut(s) 325, 437, 443
Bst2UI CCWGG 2 cut(s) 90, 385
Bst4CI ACNGT 2 cut(s) 70, 311
BstC8I GCNNGC 2 cut(s) 78, 295
BstDEI CTNAG 3 cut(s) 329, 349, 464
BstF5I GGATG 1 cut(s) 188
BstKTI GATC 3 cut(s) 328, 440, 446
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 3 cut(s) 325, 437, 443
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 2 cut(s) 90, 385
BstNSI RCATGY 1 cut(s) 297
BstSCI CCNGG 2 cut(s) 88, 383
BstSFI CTRYAG 2 cut(s) 78, 307
BstSLI GKGCMC 1 cut(s) 404
BstV1I GCAGC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 437
BstYI RGATCY 1 cut(s) 437
BsuRI GGCC 2 cut(s) 76, 164
BtsCI GGATG 1 cut(s) 188
BtsI GCAGTG 1 cut(s) 145
BtsIMutI CAGTG 2 cut(s) 145, 461
Cac8I GCNNGC 2 cut(s) 78, 295
Cfr13I GGNCC 1 cut(s) 11
Csp6I GTAC 1 cut(s) 220
CviAII CATG 1 cut(s) 294
CviJI RGCY 6 cut(s) 76, 112, 130, 164, 421, 476
CviKI_1 RGCY 6 cut(s) 76, 112, 130, 164, 421, 476
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 3 cut(s) 329, 349, 464
DpnI GATC 3 cut(s) 327, 439, 445
DpnII GATC 3 cut(s) 325, 437, 443
Eco47I GGWCC 1 cut(s) 11
EcoRII CCWGG 2 cut(s) 88, 383
FaeI CATG 1 cut(s) 297
FaiI YATR 9 cut(s) 50, 103, 240, 268, 295, 315, 321, 363, 406
FaqI GGGAC 1 cut(s) 107
FatI CATG 1 cut(s) 293
FauI CCCGC 1 cut(s) 160
Fnu4HI GCNGC 1 cut(s) 226
FokI GGATG 1 cut(s) 195
Fsp4HI GCNGC 1 cut(s) 226
FspBI CTAG 1 cut(s) 33
GluI GCNGC 1 cut(s) 226
HaeIII GGCC 2 cut(s) 76, 164
Hin1II CATG 1 cut(s) 297
HindIII AAGCTT 1 cut(s) 419
HinfI GANTC 1 cut(s) 26
HphI GGTGA 2 cut(s) 34, 401
Hpy166II GTNNAC 3 cut(s) 145, 260, 402
Hpy188I TCNGA 2 cut(s) 25, 330
Hpy188III TCNNGA 1 cut(s) 441
Hpy8I GTNNAC 3 cut(s) 145, 260, 402
HpyAV CCTTC 1 cut(s) 154
HpyCH4III ACNGT 2 cut(s) 70, 311
HpyCH4V TGCA 4 cut(s) 60, 80, 186, 402
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 3 cut(s) 329, 349, 464
Hsp92II CATG 1 cut(s) 297
Kzo9I GATC 3 cut(s) 325, 437, 443
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 1 cut(s) 173
MaeI CTAG 1 cut(s) 33
MaeIII GTNAC 2 cut(s) 82, 459
MalI GATC 3 cut(s) 327, 439, 445
MboI GATC 3 cut(s) 325, 437, 443
MboII GAAGA 1 cut(s) 184
MfeI CAATTG 1 cut(s) 55
MflI RGATCY 1 cut(s) 437
MhlI GDGCHC 1 cut(s) 404
MluCI AATT 3 cut(s) 55, 358, 517
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 1 cut(s) 224
MseI TTAA 3 cut(s) 504, 516, 523
MspA1I CMGCKG 1 cut(s) 155
MspR9I CCNGG 2 cut(s) 90, 385
MunI CAATTG 1 cut(s) 55
MvaI CCWGG 2 cut(s) 90, 385
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 3 cut(s) 325, 437, 443
NlaIII CATG 1 cut(s) 297
NmeAIII GCCGAG 1 cut(s) 254
NmuCI GTSAC 1 cut(s) 459
NspI RCATGY 1 cut(s) 297
PaeI GCATGC 1 cut(s) 297
PasI CCCWGGG 1 cut(s) 89
PflMI CCANNNNNTGG 1 cut(s) 137
PkrI GCNGC 1 cut(s) 227
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PshBI ATTAAT 2 cut(s) 504, 516
PsiI TTATAA 1 cut(s) 50
Psp6I CCWGG 2 cut(s) 88, 383
PspGI CCWGG 2 cut(s) 88, 383
PspPI GGNCC 1 cut(s) 11
PstI CTGCAG 1 cut(s) 82
PsuI RGATCY 1 cut(s) 437
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
SaqAI TTAA 3 cut(s) 504, 516, 523
SatI GCNGC 1 cut(s) 226
Sau3AI GATC 3 cut(s) 325, 437, 443
Sau96I GGNCC 1 cut(s) 11
ScaI AGTACT 1 cut(s) 221
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 2 cut(s) 90, 385
SduI GDGCHC 1 cut(s) 404
SetI ASST 3 cut(s) 399, 423, 454
SfaNI GCATC 1 cut(s) 173
SfcI CTRYAG 2 cut(s) 78, 307
SinI GGWCC 1 cut(s) 11
SphI GCATGC 1 cut(s) 297
Sse9I AATT 3 cut(s) 55, 358, 517
SsiI CCGC 1 cut(s) 153
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 2 cut(s) 88, 383
TaaI ACNGT 2 cut(s) 70, 311
TaqI TCGA 1 cut(s) 207
TasI AATT 3 cut(s) 55, 358, 517
TatI WGTACW 1 cut(s) 219
Tru1I TTAA 3 cut(s) 504, 516, 523
Tru9I TTAA 3 cut(s) 504, 516, 523
TscAI CASTG 2 cut(s) 152, 468
TseFI GTSAC 1 cut(s) 459
TseI GCWGC 1 cut(s) 225
Tsp45I GTSAC 1 cut(s) 459
TspRI CASTG 2 cut(s) 152, 468
Van91I CCANNNNNTGG 1 cut(s) 137
VneI GTGCAC 1 cut(s) 400
VpaK11BI GGWCC 1 cut(s) 11
VspI ATTAAT 2 cut(s) 504, 516
XceI RCATGY 1 cut(s) 297
XspI CTAG 1 cut(s) 33
ZrmI AGTACT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.