pycom08g14470

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0011929
Physical Location & Seq
Forward (+)
13723062 .. 13724452
1391 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g14470.1

Sequence Viewer

Length: 795 bp
ATGGCAAAACCTTTCAATCGATTAATGTTACCGCTTTTATCGGTTTTTATGGTTCTTTCAGGACCAAAGTTATCCGAGTCCGCTAGAATTTTCACCATTATAAACAATTGCAAAGAGACAGTCTGGCCAGCAGTGACTCCTGGGGAGAACTTCAATGGTGGTGGTTTTGTGCTAAAACCGGGCCAGTCAATGGTATTCACCGCCCCAGTAAGCTGGTCTGGCAGGATATGGGGTCGAACGGGCTGCAACTTTGACAAAACTGGCAATGGCTCATGCCAGACCGGGTCCTGTGGCAGCGCCCTCCAGTGTGGAGCCTCAGGAAAGCCCCCAGCAACACTTGCCGAGTTCACATTGGCCGCGCTAGACTTTTATGATGTGAGCCTTGTTGACGGGTTCAACTTGCCGTTGGTTGTGACACCTCTAAATGGTAAGGGGAATTGCAGCGTATCTGGTTGTGACGGGGACCTGAGACCAAATTGCCCTAATGAGCTAGCTGTCAAAGCAAATGGGAAGACCGTTGGATGCAGAAGCGCATGTGACGTGTTCGACACTGATGAGTACTGCTGCAGAGGGCTTTATGGCAATGCTGCTGTGTGTAAACCCACATATTATTCCAAGAAGTTCAAAGAAGCATGCCCTACTGCCTACAGCTATGCTTTAGGAACGATGATCCGACCAGTATTTTTACTTGCTCGGGCACAGATTATGTCGTCGCTTTCTGCTCAACTAGGAAGCAACCAGTGTGCACATATCATAACCACAAGCTTGTGTGTGGTAATGGATCTGGATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

265

Amino Acids

28.04

Weight (kDa)

8.3

Isoelectric Point (pI)

27.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 35 - 220 5.7e-71 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77700 AT1G77700 AT1G77700
fragaria_vesca FvH4_2g26400
malus_domestica MD08G1169300.v1.1 MD15G1355700.v1.1 MD15G1355800.v1.1
prunus_persica Prupe.1G503200_v2.0.a1
pyrus_communis pycom08g14470 pycom15g31790
rosa_chinensis RchiOBHm_Chr6g0294961
rosa_laevigata RLG00000011825
rosa_roxburghii Rroxscaffold_7G00172790
rosa_rugosa Rorug06G0248900
rosa_samantha Rh6AG361900 Rh6BG369400 Rh6CG375900 Rh6DG362500
rosa_wichuraiana Rw6G031580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 190
AccII CGCG 1 cut(s) 359
AciI CCGC 4 cut(s) 32, 81, 201, 357
AclWI GGATC 2 cut(s) 664, 789
AcoI YGGCCR 2 cut(s) 125, 354
AcsI RAATTY 1 cut(s) 87
AfaI GTAC 1 cut(s) 560
AfiI CCNNNNNNNGG 2 cut(s) 190, 425
AflIII ACRYGT 1 cut(s) 540
AgsI TTSAA 4 cut(s) 16, 154, 397, 625
AjiI CACGTC 1 cut(s) 541
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 5 cut(s) 213, 490, 494, 651, 765
AluI AGCT 5 cut(s) 213, 490, 494, 651, 765
Alw21I GWGCWC 1 cut(s) 748
Alw26I GTCTC 2 cut(s) 110, 463
Alw44I GTGCAC 1 cut(s) 744
AlwI GGATC 2 cut(s) 664, 789
Ama87I CYCGRG 1 cut(s) 693
AoxI GGCC 3 cut(s) 125, 181, 354
ApaLI GTGCAC 1 cut(s) 744
ApeKI GCWGC 5 cut(s) 243, 294, 441, 564, 587
ApoI RAATTY 1 cut(s) 87
ArsI GACNNNNNNTTYG 2 cut(s) 105, 137
AseI ATTAAT 1 cut(s) 23
AspLEI GCGC 3 cut(s) 299, 361, 533
AspS9I GGNCC 4 cut(s) 62, 181, 285, 463
AsuC2I CCSGG 2 cut(s) 180, 283
AsuHPI GGTGA 2 cut(s) 85, 190
AsuNHI GCTAGC 1 cut(s) 490
AvaI CYCGRG 1 cut(s) 693
AvaII GGWCC 3 cut(s) 62, 285, 463
AxyI CCTNAGG 1 cut(s) 316
BaeGI GKGCMC 2 cut(s) 700, 748
BalI TGGCCA 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 518
Bbv12I GWGCWC 1 cut(s) 748
BbvI GCAGC 5 cut(s) 230, 306, 453, 551, 574
BceAI ACGGC 1 cut(s) 388
BcgI CGANNNNNNTGC 2 cut(s) 225, 259
BciT130I CCWGG 1 cut(s) 141
BcnI CCSGG 2 cut(s) 180, 283
BcoDI GTCTC 2 cut(s) 110, 463
BfaI CTAG 4 cut(s) 84, 362, 491, 728
BfmI CTRYAG 2 cut(s) 565, 646
BfoI RGCGCY 1 cut(s) 300
BisI GCNGC 6 cut(s) 244, 295, 357, 442, 565, 588
BlsI GCNGC 6 cut(s) 245, 296, 358, 443, 566, 589
BmcAI AGTACT 1 cut(s) 560
Bme1390I CCNGG 3 cut(s) 141, 180, 283
Bme18I GGWCC 3 cut(s) 62, 285, 463
BmeT110I CYCGRG 1 cut(s) 693
BmgBI CACGTC 1 cut(s) 541
BmgT120I GGNCC 4 cut(s) 62, 181, 285, 463
BmiI GGNNCC 3 cut(s) 286, 313, 464
BmrFI CCNGG 3 cut(s) 141, 180, 283
BmrI ACTGGG 1 cut(s) 200
BmsI GCATC 1 cut(s) 512
BmtI GCTAGC 1 cut(s) 494
BmuI ACTGGG 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 518
BpmI CTGGAG 1 cut(s) 287
BpuMI CCSGG 2 cut(s) 180, 283
Bsa29I ATCGAT 1 cut(s) 19
BsaBI GATNNNNATC 1 cut(s) 786
BsaI GGTCTC 1 cut(s) 463
BsaJI CCNNGG 1 cut(s) 140
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 425
Bse1I ACTGG 6 cut(s) 184, 206, 265, 304, 677, 739
Bse21I CCTNAGG 1 cut(s) 316
Bse3DI GCAATG 2 cut(s) 271, 589
Bse8I GATNNNNATC 1 cut(s) 786
BseBI CCWGG 1 cut(s) 141
BseCI ATCGAT 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 140
BseGI GGATG 1 cut(s) 527
BseJI GATNNNNATC 1 cut(s) 786
BseLI CCNNNNNNNGG 2 cut(s) 190, 425
BseMI GCAATG 2 cut(s) 271, 589
BseMII CTCAG 2 cut(s) 330, 458
BseNI ACTGG 6 cut(s) 184, 206, 265, 304, 677, 739
BseSI GKGCMC 2 cut(s) 700, 748
BseXI GCAGC 5 cut(s) 230, 306, 453, 551, 574
BseYI CCCAGC 1 cut(s) 328
Bsh1236I CGCG 1 cut(s) 359
BshFI GGCC 3 cut(s) 127, 183, 356
BshVI ATCGAT 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 748
BsiHKCI CYCGRG 1 cut(s) 693
BsiSI CCGG 2 cut(s) 179, 282
BslFI GGGAC 1 cut(s) 476
BslI CCNNNNNNNGG 2 cut(s) 190, 425
BsmAI GTCTC 2 cut(s) 110, 463
BsmFI GGGAC 1 cut(s) 476
BsnI GGCC 3 cut(s) 127, 183, 356
Bso31I GGTCTC 1 cut(s) 463
BsoBI CYCGRG 1 cut(s) 693
Bsp1286I GDGCHC 2 cut(s) 700, 748
Bsp143I GATC 3 cut(s) 669, 781, 787
BspACI CCGC 4 cut(s) 32, 81, 201, 357
BspANI GGCC 3 cut(s) 127, 183, 356
BspCNI CTCAG 2 cut(s) 329, 459
BspDI ATCGAT 1 cut(s) 19
BspFNI CGCG 1 cut(s) 359
BspLI GGNNCC 3 cut(s) 286, 313, 464
BspMAI CTGCAG 1 cut(s) 569
BspOI GCTAGC 1 cut(s) 494
BspPI GGATC 2 cut(s) 664, 789
BspTNI GGTCTC 1 cut(s) 463
BsrDI GCAATG 2 cut(s) 271, 589
BsrI ACTGG 6 cut(s) 184, 206, 265, 304, 677, 739
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 3 cut(s) 669, 781, 787
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 2 cut(s) 121, 517
BstAPI GCANNNNNTGC 1 cut(s) 338
BstC8I GCNNGC 3 cut(s) 129, 492, 634
BstDEI CTNAG 2 cut(s) 316, 467
BstF5I GGATG 1 cut(s) 527
BstFNI CGCG 1 cut(s) 359
BstH2I RGCGCY 1 cut(s) 300
BstHHI GCGC 3 cut(s) 299, 361, 533
BstKTI GATC 3 cut(s) 672, 784, 790
BstMAI GTCTC 2 cut(s) 110, 463
BstMBI GATC 3 cut(s) 669, 781, 787
BstMWI GCNNNNNNNGC 3 cut(s) 219, 338, 500
BstNI CCWGG 1 cut(s) 141
BstNSI RCATGY 2 cut(s) 537, 636
BstSCI CCNGG 3 cut(s) 139, 178, 281
BstSFI CTRYAG 2 cut(s) 565, 646
BstSLI GKGCMC 2 cut(s) 700, 748
BstUI CGCG 1 cut(s) 359
BstV1I GCAGC 5 cut(s) 230, 306, 453, 551, 574
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 1 cut(s) 781
BstXI CCANNNNNNTGG 1 cut(s) 213
BstYI RGATCY 1 cut(s) 781
Bsu15I ATCGAT 1 cut(s) 19
Bsu36I CCTNAGG 1 cut(s) 316
BsuRI GGCC 3 cut(s) 127, 183, 356
BsuTUI ATCGAT 1 cut(s) 19
BtrI CACGTC 1 cut(s) 541
BtsCI GGATG 1 cut(s) 527
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 4 cut(s) 138, 311, 549, 746
Cac8I GCNNGC 3 cut(s) 129, 492, 634
CfoI GCGC 3 cut(s) 299, 361, 533
Cfr13I GGNCC 4 cut(s) 62, 181, 285, 463
ClaI ATCGAT 1 cut(s) 19
Csp6I GTAC 1 cut(s) 559
CspCI CAANNNNNGTGG 2 cut(s) 142, 177
CviAII CATG 3 cut(s) 273, 534, 633
CviQI GTAC 1 cut(s) 559
DdeI CTNAG 2 cut(s) 316, 467
DpnI GATC 3 cut(s) 671, 783, 789
DpnII GATC 3 cut(s) 669, 781, 787
EaeI YGGCCR 2 cut(s) 125, 354
Eco31I GGTCTC 1 cut(s) 463
Eco47I GGWCC 3 cut(s) 62, 285, 463
Eco81I CCTNAGG 1 cut(s) 316
Eco88I CYCGRG 1 cut(s) 693
EcoO109I RGGNCCY 2 cut(s) 285, 463
EcoRII CCWGG 1 cut(s) 139
FaeI CATG 3 cut(s) 276, 537, 636
FaqI GGGAC 1 cut(s) 476
FatI CATG 3 cut(s) 272, 533, 632
Fnu4HI GCNGC 6 cut(s) 244, 295, 357, 442, 565, 588
FokI GGATG 1 cut(s) 534
Fsp4HI GCNGC 6 cut(s) 244, 295, 357, 442, 565, 588
FspBI CTAG 4 cut(s) 84, 362, 491, 728
GlaI GCGC 3 cut(s) 298, 360, 532
GluI GCNGC 6 cut(s) 244, 295, 357, 442, 565, 588
GsaI CCCAGC 1 cut(s) 332
GsuI CTGGAG 1 cut(s) 287
HaeII RGCGCY 1 cut(s) 300
HaeIII GGCC 3 cut(s) 127, 183, 356
HapII CCGG 2 cut(s) 179, 282
HhaI GCGC 3 cut(s) 299, 361, 533
Hin1II CATG 3 cut(s) 276, 537, 636
Hin6I GCGC 3 cut(s) 297, 359, 531
HinP1I GCGC 3 cut(s) 297, 359, 531
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HindIII AAGCTT 1 cut(s) 763
HinfI GANTC 2 cut(s) 77, 136
HpaII CCGG 2 cut(s) 179, 282
HphI GGTGA 2 cut(s) 85, 190
Hpy166II GTNNAC 4 cut(s) 348, 388, 599, 746
Hpy188I TCNGA 2 cut(s) 76, 674
Hpy188III TCNNGA 3 cut(s) 60, 318, 785
Hpy8I GTNNAC 4 cut(s) 348, 388, 599, 746
Hpy99I CGWCG 1 cut(s) 715
HpyCH4III ACNGT 2 cut(s) 121, 517
HpyCH4IV ACGT 1 cut(s) 540
HpyCH4V TGCA 6 cut(s) 111, 246, 441, 525, 567, 746
HpyF10VI GCNNNNNNNGC 3 cut(s) 219, 338, 500
HpyF3I CTNAG 2 cut(s) 316, 467
HpySE526I ACGT 1 cut(s) 540
Hsp92II CATG 3 cut(s) 276, 537, 636
HspAI GCGC 3 cut(s) 297, 359, 531
Kzo9I GATC 3 cut(s) 669, 781, 787
LmnI GCTCC 1 cut(s) 311
Lsp1109I GCAGC 5 cut(s) 230, 306, 453, 551, 574
LweI GCATC 1 cut(s) 512
MaeI CTAG 4 cut(s) 84, 362, 491, 728
MaeII ACGT 1 cut(s) 540
MaeIII GTNAC 5 cut(s) 27, 133, 412, 455, 536
MalI GATC 3 cut(s) 671, 783, 789
MboI GATC 3 cut(s) 669, 781, 787
MboII GAAGA 1 cut(s) 523
MfeI CAATTG 1 cut(s) 106
MflI RGATCY 1 cut(s) 781
MhlI GDGCHC 2 cut(s) 700, 748
MlsI TGGCCA 1 cut(s) 127
MluCI AATT 4 cut(s) 87, 106, 436, 475
MluNI TGGCCA 1 cut(s) 127
MlyI GAGTC 2 cut(s) 86, 130
MmeI TCCRAC 2 cut(s) 499, 697
MnlI CCTC 4 cut(s) 311, 325, 429, 563
Mox20I TGGCCA 1 cut(s) 127
MscI TGGCCA 1 cut(s) 127
MseI TTAA 1 cut(s) 23
Msp20I TGGCCA 1 cut(s) 127
MspI CCGG 2 cut(s) 179, 282
MspR9I CCNGG 3 cut(s) 141, 180, 283
MunI CAATTG 1 cut(s) 106
MvaI CCWGG 1 cut(s) 141
MvnI CGCG 1 cut(s) 359
MwoI GCNNNNNNNGC 3 cut(s) 219, 338, 500
NciI CCSGG 2 cut(s) 180, 283
NdeII GATC 3 cut(s) 669, 781, 787
NheI GCTAGC 1 cut(s) 490
NlaIII CATG 3 cut(s) 276, 537, 636
NlaIV GGNNCC 3 cut(s) 286, 313, 464
NmeAIII GCCGAG 1 cut(s) 367
NmuCI GTSAC 4 cut(s) 133, 412, 455, 536
NspI RCATGY 2 cut(s) 537, 636
PaeI GCATGC 1 cut(s) 636
PflFI GACNNNGTC 1 cut(s) 283
PflMI CCANNNNNTGG 1 cut(s) 190
PkrI GCNGC 6 cut(s) 245, 296, 358, 443, 566, 589
PleI GAGTC 2 cut(s) 85, 130
PpsI GAGTC 2 cut(s) 85, 130
PpuMI RGGWCCY 2 cut(s) 285, 463
PshBI ATTAAT 1 cut(s) 23
PsiI TTATAA 1 cut(s) 101
Psp5II RGGWCCY 2 cut(s) 285, 463
Psp6I CCWGG 1 cut(s) 139
PspFI CCCAGC 1 cut(s) 328
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 3 cut(s) 286, 313, 464
PspPI GGNCC 4 cut(s) 62, 181, 285, 463
PspPPI RGGWCCY 2 cut(s) 285, 463
PstI CTGCAG 1 cut(s) 569
PsuI RGATCY 1 cut(s) 781
PsyI GACNNNGTC 1 cut(s) 283
RsaI GTAC 1 cut(s) 560
RsaNI GTAC 1 cut(s) 559
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 6 cut(s) 244, 295, 357, 442, 565, 588
Sau3AI GATC 3 cut(s) 669, 781, 787
Sau96I GGNCC 4 cut(s) 62, 181, 285, 463
ScaI AGTACT 1 cut(s) 560
SchI GAGTC 2 cut(s) 86, 130
ScrFI CCNGG 3 cut(s) 141, 180, 283
SduI GDGCHC 2 cut(s) 700, 748
SetI ASST 9 cut(s) 13, 215, 421, 468, 492, 496, 543, 653, 767
SfaNI GCATC 1 cut(s) 512
SfcI CTRYAG 2 cut(s) 565, 646
SinI GGWCC 3 cut(s) 62, 285, 463
SphI GCATGC 1 cut(s) 636
Sse9I AATT 4 cut(s) 87, 106, 436, 475
SsiI CCGC 4 cut(s) 32, 81, 201, 357
SspMI CTAG 4 cut(s) 84, 362, 491, 728
StyD4I CCNGG 3 cut(s) 139, 178, 281
TaaI ACNGT 2 cut(s) 121, 517
TaiI ACGT 1 cut(s) 543
TaqI TCGA 3 cut(s) 19, 235, 546
TasI AATT 4 cut(s) 87, 106, 436, 475
TatI WGTACW 1 cut(s) 558
TauI GCSGC 1 cut(s) 359
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 4 cut(s) 138, 311, 556, 746
TseFI GTSAC 4 cut(s) 133, 412, 455, 536
TseI GCWGC 5 cut(s) 243, 294, 441, 564, 587
Tsp45I GTSAC 4 cut(s) 133, 412, 455, 536
TspRI CASTG 4 cut(s) 138, 311, 556, 746
Tth111I GACNNNGTC 1 cut(s) 283
Van91I CCANNNNNTGG 1 cut(s) 190
VneI GTGCAC 1 cut(s) 744
VpaK11BI GGWCC 3 cut(s) 62, 285, 463
VspI ATTAAT 1 cut(s) 23
XapI RAATTY 1 cut(s) 87
XceI RCATGY 2 cut(s) 537, 636
XspI CTAG 4 cut(s) 84, 362, 491, 728
ZrmI AGTACT 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.