MD08G1169300.v1.1

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0011929
Physical Location & Seq
Forward (+)
20282320 .. 20283966
1647 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1169300.v1.1.491

Sequence Viewer

Length: 864 bp
ATGGCAAAATGTTTCAATCGATTAATGTTGCCGCTTTTATCGGTTTTTATGGTTCTTTCAGGACCAAAGTTATCCGAGTCTGCTAGAATTTTCACCATTATAAACAATTGCAAAGAGACAGTCTGGCCAGCAGTGACTCCTGGGGAGAACTTCAATGGTGGTGGTTTTGTGCTAAAACCGGGCCAGTCAATCGTATTCACTGCCCCAGTAAGCTGGTCTGGCAGGATATGGGGTCGAACGGGCTGCAACTTTGACAAAAATGGCAATGGCTCATGCCAGACCGGGTCCTGTGGCAGCGCCCTCCAGTGTGGAGCCTCAGGAAAGCCCCCAGCAACACTTGCCGAGTTCACATTGACCGCGCTAGACTTTTATGATGTGAGCCTTGTTGACGGGTTCAACTTGCCGTTGGTTGTGACACCTCTAAATGGTAAGGGAAATTGCAGCGTATCCGGTTGTGACATGGACCTGAGACCAAATTGCCCTAATGAGCTAGCTGTCAAAGCAAATGGGAAGACCGTTGGATGCAGAAGCGCATGTGACGTGTTCGACACTGATGAGTACTGCTGCAGAGGGCTTTATGGTAATGCTGCTGTGTGTAAACCCACATATTATTCCAAGAAGTTCAAAGAAGCATGCCCTACTGCCTACAGCTATGCTTACGATGATCCGACCAGTATTTTTACTTGCTCGGGCACAGATTATGTCGTCGCTTTCTGCTCAACTAGGAAGCAACCAGTGTGCACATATCATAACCACAAGCTTGTGTGTGGTAATGGATCTGGATCAGTAGGTTTAACGTCATTGAGATGGTGGGCTGTGATGCTTGGAGTGTTAATGATGATTAATTTATGGATTAATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

288

Amino Acids

30.91

Weight (kDa)

8.35

Isoelectric Point (pI)

28.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 35 - 240 9.6e-79 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77700 AT1G77700 AT1G77700
fragaria_vesca FvH4_2g26400
malus_domestica MD08G1169300.v1.1 MD15G1355700.v1.1 MD15G1355800.v1.1
prunus_persica Prupe.1G503200_v2.0.a1
pyrus_communis pycom08g14470 pycom15g31790
rosa_chinensis RchiOBHm_Chr6g0294961
rosa_laevigata RLG00000011825
rosa_roxburghii Rroxscaffold_7G00172790
rosa_rugosa Rorug06G0248900
rosa_samantha Rh6AG361900 Rh6BG369400 Rh6CG375900 Rh6DG362500
rosa_wichuraiana Rw6G031580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 101
AccII CGCG 1 cut(s) 359
AciI CCGC 2 cut(s) 32, 357
AclWI GGATC 3 cut(s) 659, 784, 790
AcoI YGGCCR 1 cut(s) 125
AcsI RAATTY 1 cut(s) 87
AfaI GTAC 1 cut(s) 560
AfiI CCNNNNNNNGG 1 cut(s) 425
AflIII ACRYGT 1 cut(s) 540
AgsI TTSAA 4 cut(s) 16, 154, 397, 625
AjiI CACGTC 1 cut(s) 541
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 5 cut(s) 213, 490, 494, 651, 760
AluI AGCT 5 cut(s) 213, 490, 494, 651, 760
Alw21I GWGCWC 1 cut(s) 743
Alw26I GTCTC 2 cut(s) 110, 463
Alw44I GTGCAC 1 cut(s) 739
AlwI GGATC 3 cut(s) 659, 784, 790
Ama87I CYCGRG 1 cut(s) 688
AoxI GGCC 2 cut(s) 125, 181
ApaLI GTGCAC 1 cut(s) 739
ApeKI GCWGC 5 cut(s) 243, 294, 441, 564, 587
ApoI RAATTY 1 cut(s) 87
ArsI GACNNNNNNTTYG 2 cut(s) 105, 137
AseI ATTAAT 3 cut(s) 23, 843, 855
AspLEI GCGC 3 cut(s) 299, 361, 533
AspS9I GGNCC 4 cut(s) 62, 181, 285, 463
AsuC2I CCSGG 2 cut(s) 180, 283
AsuHPI GGTGA 1 cut(s) 85
AsuNHI GCTAGC 1 cut(s) 490
AvaI CYCGRG 1 cut(s) 688
AvaII GGWCC 3 cut(s) 62, 285, 463
AxyI CCTNAGG 1 cut(s) 316
BaeGI GKGCMC 2 cut(s) 695, 743
BalI TGGCCA 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 518
Bbv12I GWGCWC 1 cut(s) 743
BbvI GCAGC 5 cut(s) 230, 306, 453, 551, 574
BccI CCATC 1 cut(s) 801
BceAI ACGGC 1 cut(s) 388
BcgI CGANNNNNNTGC 2 cut(s) 225, 259
BciT130I CCWGG 1 cut(s) 141
BciVI GTATCC 1 cut(s) 457
BcnI CCSGG 2 cut(s) 180, 283
BcoDI GTCTC 2 cut(s) 110, 463
BfaI CTAG 4 cut(s) 84, 362, 491, 723
BfmI CTRYAG 2 cut(s) 565, 646
BfoI RGCGCY 1 cut(s) 300
BfuI GTATCC 1 cut(s) 457
BisI GCNGC 6 cut(s) 32, 244, 295, 442, 565, 588
BlsI GCNGC 6 cut(s) 33, 245, 296, 443, 566, 589
BmcAI AGTACT 1 cut(s) 560
Bme1390I CCNGG 3 cut(s) 141, 180, 283
Bme18I GGWCC 3 cut(s) 62, 285, 463
BmeT110I CYCGRG 1 cut(s) 688
BmgBI CACGTC 1 cut(s) 541
BmgT120I GGNCC 4 cut(s) 62, 181, 285, 463
BmiI GGNNCC 2 cut(s) 286, 313
BmrFI CCNGG 3 cut(s) 141, 180, 283
BmrI ACTGGG 1 cut(s) 200
BmsI GCATC 2 cut(s) 512, 810
BmtI GCTAGC 1 cut(s) 494
BmuI ACTGGG 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 518
BpmI CTGGAG 1 cut(s) 287
BpuMI CCSGG 2 cut(s) 180, 283
Bsa29I ATCGAT 1 cut(s) 19
BsaBI GATNNNNATC 1 cut(s) 781
BsaI GGTCTC 1 cut(s) 463
BsaJI CCNNGG 1 cut(s) 140
BsaWI WCCGGW 1 cut(s) 449
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse1I ACTGG 5 cut(s) 184, 206, 304, 672, 734
Bse21I CCTNAGG 1 cut(s) 316
Bse3DI GCAATG 1 cut(s) 271
Bse8I GATNNNNATC 1 cut(s) 781
BseBI CCWGG 1 cut(s) 141
BseCI ATCGAT 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 140
BseGI GGATG 1 cut(s) 527
BseJI GATNNNNATC 1 cut(s) 781
BseLI CCNNNNNNNGG 1 cut(s) 425
BseMI GCAATG 1 cut(s) 271
BseMII CTCAG 2 cut(s) 330, 458
BseNI ACTGG 5 cut(s) 184, 206, 304, 672, 734
BseSI GKGCMC 2 cut(s) 695, 743
BseXI GCAGC 5 cut(s) 230, 306, 453, 551, 574
BseYI CCCAGC 1 cut(s) 328
Bsh1236I CGCG 1 cut(s) 359
BshFI GGCC 2 cut(s) 127, 183
BshVI ATCGAT 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 743
BsiHKCI CYCGRG 1 cut(s) 688
BsiSI CCGG 3 cut(s) 179, 282, 450
BslI CCNNNNNNNGG 1 cut(s) 425
BsmAI GTCTC 2 cut(s) 110, 463
BsnI GGCC 2 cut(s) 127, 183
Bso31I GGTCTC 1 cut(s) 463
BsoBI CYCGRG 1 cut(s) 688
Bsp1286I GDGCHC 2 cut(s) 695, 743
Bsp143I GATC 3 cut(s) 664, 776, 782
BspACI CCGC 2 cut(s) 32, 357
BspANI GGCC 2 cut(s) 127, 183
BspCNI CTCAG 2 cut(s) 329, 459
BspDI ATCGAT 1 cut(s) 19
BspFNI CGCG 1 cut(s) 359
BspLI GGNNCC 2 cut(s) 286, 313
BspMAI CTGCAG 1 cut(s) 569
BspOI GCTAGC 1 cut(s) 494
BspPI GGATC 3 cut(s) 659, 784, 790
BspTNI GGTCTC 1 cut(s) 463
BsrDI GCAATG 1 cut(s) 271
BsrI ACTGG 5 cut(s) 184, 206, 304, 672, 734
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 3 cut(s) 664, 776, 782
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 2 cut(s) 121, 517
BstAPI GCANNNNNTGC 1 cut(s) 338
BstC8I GCNNGC 3 cut(s) 129, 492, 634
BstDEI CTNAG 2 cut(s) 316, 467
BstF5I GGATG 1 cut(s) 527
BstFNI CGCG 1 cut(s) 359
BstH2I RGCGCY 1 cut(s) 300
BstHHI GCGC 3 cut(s) 299, 361, 533
BstKTI GATC 3 cut(s) 667, 779, 785
BstMAI GTCTC 2 cut(s) 110, 463
BstMBI GATC 3 cut(s) 664, 776, 782
BstMWI GCNNNNNNNGC 3 cut(s) 219, 338, 500
BstNI CCWGG 1 cut(s) 141
BstNSI RCATGY 2 cut(s) 537, 636
BstSCI CCNGG 3 cut(s) 139, 178, 281
BstSFI CTRYAG 2 cut(s) 565, 646
BstSLI GKGCMC 2 cut(s) 695, 743
BstUI CGCG 1 cut(s) 359
BstV1I GCAGC 5 cut(s) 230, 306, 453, 551, 574
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 1 cut(s) 776
BstXI CCANNNNNNTGG 1 cut(s) 213
BstYI RGATCY 1 cut(s) 776
Bsu15I ATCGAT 1 cut(s) 19
Bsu36I CCTNAGG 1 cut(s) 316
BsuI GTATCC 1 cut(s) 457
BsuRI GGCC 2 cut(s) 127, 183
BsuTUI ATCGAT 1 cut(s) 19
BtrI CACGTC 1 cut(s) 541
BtsCI GGATG 1 cut(s) 527
BtsI GCAGTG 2 cut(s) 138, 198
BtsIMutI CAGTG 5 cut(s) 138, 198, 311, 549, 741
Cac8I GCNNGC 3 cut(s) 129, 492, 634
CfoI GCGC 3 cut(s) 299, 361, 533
Cfr13I GGNCC 4 cut(s) 62, 181, 285, 463
ClaI ATCGAT 1 cut(s) 19
Csp6I GTAC 1 cut(s) 559
CspCI CAANNNNNGTGG 2 cut(s) 142, 177
CviAII CATG 4 cut(s) 273, 460, 534, 633
CviQI GTAC 1 cut(s) 559
DdeI CTNAG 2 cut(s) 316, 467
DpnI GATC 3 cut(s) 666, 778, 784
DpnII GATC 3 cut(s) 664, 776, 782
EaeI YGGCCR 1 cut(s) 125
Eco31I GGTCTC 1 cut(s) 463
Eco47I GGWCC 3 cut(s) 62, 285, 463
Eco81I CCTNAGG 1 cut(s) 316
Eco88I CYCGRG 1 cut(s) 688
EcoO109I RGGNCCY 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 139
FaeI CATG 4 cut(s) 276, 463, 537, 636
FatI CATG 4 cut(s) 272, 459, 533, 632
Fnu4HI GCNGC 6 cut(s) 32, 244, 295, 442, 565, 588
FokI GGATG 1 cut(s) 534
Fsp4HI GCNGC 6 cut(s) 32, 244, 295, 442, 565, 588
FspBI CTAG 4 cut(s) 84, 362, 491, 723
GlaI GCGC 3 cut(s) 298, 360, 532
GluI GCNGC 6 cut(s) 32, 244, 295, 442, 565, 588
GsaI CCCAGC 1 cut(s) 332
GsuI CTGGAG 1 cut(s) 287
HaeII RGCGCY 1 cut(s) 300
HaeIII GGCC 2 cut(s) 127, 183
HapII CCGG 3 cut(s) 179, 282, 450
HhaI GCGC 3 cut(s) 299, 361, 533
Hin1II CATG 4 cut(s) 276, 463, 537, 636
Hin6I GCGC 3 cut(s) 297, 359, 531
HinP1I GCGC 3 cut(s) 297, 359, 531
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HindIII AAGCTT 1 cut(s) 758
HinfI GANTC 2 cut(s) 77, 136
HpaII CCGG 3 cut(s) 179, 282, 450
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 4 cut(s) 348, 388, 599, 741
Hpy188I TCNGA 2 cut(s) 76, 669
Hpy188III TCNNGA 3 cut(s) 60, 318, 780
Hpy8I GTNNAC 4 cut(s) 348, 388, 599, 741
Hpy99I CGWCG 1 cut(s) 710
HpyCH4III ACNGT 2 cut(s) 121, 517
HpyCH4IV ACGT 2 cut(s) 540, 797
HpyCH4V TGCA 6 cut(s) 111, 246, 441, 525, 567, 741
HpyF10VI GCNNNNNNNGC 3 cut(s) 219, 338, 500
HpyF3I CTNAG 2 cut(s) 316, 467
HpySE526I ACGT 2 cut(s) 540, 797
Hsp92II CATG 4 cut(s) 276, 463, 537, 636
HspAI GCGC 3 cut(s) 297, 359, 531
Kzo9I GATC 3 cut(s) 664, 776, 782
LmnI GCTCC 1 cut(s) 311
Lsp1109I GCAGC 5 cut(s) 230, 306, 453, 551, 574
LweI GCATC 2 cut(s) 512, 810
MaeI CTAG 4 cut(s) 84, 362, 491, 723
MaeII ACGT 2 cut(s) 540, 797
MaeIII GTNAC 4 cut(s) 133, 412, 455, 536
MalI GATC 3 cut(s) 666, 778, 784
MboI GATC 3 cut(s) 664, 776, 782
MboII GAAGA 1 cut(s) 523
MfeI CAATTG 1 cut(s) 106
MflI RGATCY 1 cut(s) 776
MhlI GDGCHC 2 cut(s) 695, 743
MlsI TGGCCA 1 cut(s) 127
MluCI AATT 6 cut(s) 87, 106, 436, 475, 844, 856
MluNI TGGCCA 1 cut(s) 127
MlyI GAGTC 2 cut(s) 86, 130
MmeI TCCRAC 2 cut(s) 499, 692
MnlI CCTC 4 cut(s) 311, 325, 429, 563
Mox20I TGGCCA 1 cut(s) 127
MscI TGGCCA 1 cut(s) 127
MseI TTAA 5 cut(s) 23, 794, 833, 843, 855
MslI CAYNNNNRTG 1 cut(s) 805
Msp20I TGGCCA 1 cut(s) 127
MspI CCGG 3 cut(s) 179, 282, 450
MspR9I CCNGG 3 cut(s) 141, 180, 283
MunI CAATTG 1 cut(s) 106
MvaI CCWGG 1 cut(s) 141
MvnI CGCG 1 cut(s) 359
MwoI GCNNNNNNNGC 3 cut(s) 219, 338, 500
NciI CCSGG 2 cut(s) 180, 283
NdeII GATC 3 cut(s) 664, 776, 782
NheI GCTAGC 1 cut(s) 490
NlaIII CATG 4 cut(s) 276, 463, 537, 636
NlaIV GGNNCC 2 cut(s) 286, 313
NmeAIII GCCGAG 1 cut(s) 367
NmuCI GTSAC 4 cut(s) 133, 412, 455, 536
NspI RCATGY 2 cut(s) 537, 636
PaeI GCATGC 1 cut(s) 636
PflFI GACNNNGTC 1 cut(s) 283
PkrI GCNGC 6 cut(s) 33, 245, 296, 443, 566, 589
PleI GAGTC 2 cut(s) 85, 130
PpsI GAGTC 2 cut(s) 85, 130
PpuMI RGGWCCY 1 cut(s) 285
PshBI ATTAAT 3 cut(s) 23, 843, 855
PsiI TTATAA 1 cut(s) 101
Psp5II RGGWCCY 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 139
PspFI CCCAGC 1 cut(s) 328
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 2 cut(s) 286, 313
PspPI GGNCC 4 cut(s) 62, 181, 285, 463
PspPPI RGGWCCY 1 cut(s) 285
PstI CTGCAG 1 cut(s) 569
PsuI RGATCY 1 cut(s) 776
PsyI GACNNNGTC 1 cut(s) 283
RsaI GTAC 1 cut(s) 560
RsaNI GTAC 1 cut(s) 559
RseI CAYNNNNRTG 1 cut(s) 805
SaqAI TTAA 5 cut(s) 23, 794, 833, 843, 855
SatI GCNGC 6 cut(s) 32, 244, 295, 442, 565, 588
Sau3AI GATC 3 cut(s) 664, 776, 782
Sau96I GGNCC 4 cut(s) 62, 181, 285, 463
ScaI AGTACT 1 cut(s) 560
SchI GAGTC 2 cut(s) 86, 130
ScrFI CCNGG 3 cut(s) 141, 180, 283
SduI GDGCHC 2 cut(s) 695, 743
SfaNI GCATC 2 cut(s) 512, 810
SfcI CTRYAG 2 cut(s) 565, 646
SinI GGWCC 3 cut(s) 62, 285, 463
SmiMI CAYNNNNRTG 1 cut(s) 805
SphI GCATGC 1 cut(s) 636
Sse9I AATT 6 cut(s) 87, 106, 436, 475, 844, 856
SsiI CCGC 2 cut(s) 32, 357
SspMI CTAG 4 cut(s) 84, 362, 491, 723
StyD4I CCNGG 3 cut(s) 139, 178, 281
TaaI ACNGT 2 cut(s) 121, 517
TaiI ACGT 2 cut(s) 543, 800
TaqI TCGA 3 cut(s) 19, 235, 546
TasI AATT 6 cut(s) 87, 106, 436, 475, 844, 856
TatI WGTACW 1 cut(s) 558
TauI GCSGC 1 cut(s) 34
Tru1I TTAA 5 cut(s) 23, 794, 833, 843, 855
Tru9I TTAA 5 cut(s) 23, 794, 833, 843, 855
TscAI CASTG 5 cut(s) 138, 205, 311, 556, 741
TseFI GTSAC 4 cut(s) 133, 412, 455, 536
TseI GCWGC 5 cut(s) 243, 294, 441, 564, 587
Tsp45I GTSAC 4 cut(s) 133, 412, 455, 536
TspRI CASTG 5 cut(s) 138, 205, 311, 556, 741
Tth111I GACNNNGTC 1 cut(s) 283
VneI GTGCAC 1 cut(s) 739
VpaK11BI GGWCC 3 cut(s) 62, 285, 463
VspI ATTAAT 3 cut(s) 23, 843, 855
XapI RAATTY 1 cut(s) 87
XceI RCATGY 2 cut(s) 537, 636
XspI CTAG 4 cut(s) 84, 362, 491, 723
ZrmI AGTACT 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.