pycom15g31790

Ubiquitin fold modifier 1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011929
Physical Location & Seq
Forward (+)
30562964 .. 30566291
3328 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g31790.1

Sequence Viewer

Length: 1122 bp
ATGGTAAAGAACGAAACAATTATAAACGAAGGACCTCTCTCTCGAACACAAAAAATAAAATGGCGGGAGGTGGAAAGCTCCCCTCGAAAGTGTTCGTATCGTACAAACCTAGTCCAATGCCTCTTCCGCTTTTTCATAATTTTTTATAAATTCAATCAAATTATTGGGAACTTGTTTTTTCCTTTAACGTTTAGCGTTCCGGAAGTAGCCCCTTTCACCGCCGTGCTGAAATTCGGTGCCGAGGAATTCAAAGTGTCTCCCCAAACCAGCGGTACCATCACCAACGATGGTGTTGGAATCAATCCTCAGCAAAGTGCAGGACCAAAGTTATCCGAATCTGCTAGAACTTTCACCATTGTAAACAATTGCAAAGAGACAGTCTGGCCTGCAGTGATTCCTGCGGACAACTTCACTGCTGGTGGTTTTGTGCTAAAACCAGGCCAGTCAATCCTGTTCACTGCCCCAGTTAGCTGGTCTGGCAGGATATGGGGTCGAACAGGCTGCAACTTTGACAAAAATGGCAATGGTTCGTGCCAGACCGGGTCCTGTGGCAACGCCCTCCAGTGTGGAGCCTCAGCAAAGCCCCCAGCAACACTCGCCGAATTCACATTGGCCAAGCAAGACTTTTATGATGTGAGCCTTGTTGACGGGTTCAACTTGCCGTTGGTTGTGACACCTCTAAATGGTACGGGAAATTGCAGTGTATCTGGTTGTGACACGGACCTGAGACCGAATTGCCCGAAAGAGCTAGCTATCAAGGCAAATGGGAAGAATATTGGATGCAGAAGCGCGTGTGATGTGTTCAACACAGATGAGTACTGCTGCCGAGGGCGTTATGGCAATGCTGCGGTGTGTAAACCCACATATTATTCTAAGAAGTTCAAAGAAGCATGCCCTACTGCCTACAGTTATGCTTATGATGATCCGACCAGCATCTTTACTTGCTCGGGCACAGATTACGTCGTCGCTTTCTGCTCAACCAGGAAGCGACCGATGTGCACATATCGCCACCACAAGATTCCGTGTCCTAATGTGTCTGGATCAGTAGGTTTAAAGTCATTTAGATGGTGGGCTGTGATGCTTGGATTGTTAATGATGATTAATTTATGGATTAATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin Ufm1

Protein Analysis

374

Amino Acids

41.03

Weight (kDa)

8.93

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ufm1 PF03671 63 - 107 2.6e-17 Ubiquitin fold modifier 1 protein
Thaumatin PF00314 121 - 326 1.4e-78 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77700 AT1G77700 AT1G77700
fragaria_vesca FvH4_2g26400
malus_domestica MD08G1169300.v1.1 MD15G1355700.v1.1 MD15G1355800.v1.1
prunus_persica Prupe.1G503200_v2.0.a1
pyrus_communis pycom08g14470 pycom15g31790
rosa_chinensis RchiOBHm_Chr6g0294961
rosa_laevigata RLG00000011825
rosa_roxburghii Rroxscaffold_7G00172790
rosa_rugosa Rorug06G0248900
rosa_samantha Rh6AG361900 Rh6BG369400 Rh6CG375900 Rh6DG362500
rosa_wichuraiana Rw6G031580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 23, 147
Acc65I GGTACC 1 cut(s) 272
AccB1I GGYRCC 2 cut(s) 236, 272
AccII CGCG 1 cut(s) 791
AccIII TCCGGA 1 cut(s) 199
AciI CCGC 6 cut(s) 64, 127, 219, 270, 401, 848
AclI AACGTT 1 cut(s) 188
AclWI GGATC 2 cut(s) 917, 1048
AcoI YGGCCR 1 cut(s) 612
AcsI RAATTY 4 cut(s) 149, 230, 245, 602
AfaI GTAC 4 cut(s) 103, 274, 688, 818
AfiI CCNNNNNNNGG 1 cut(s) 683
AgsI TTSAA 5 cut(s) 154, 250, 655, 805, 883
AjnI CCWGG 2 cut(s) 436, 980
AleI CACNNNNGTG 1 cut(s) 221
AluBI AGCT 4 cut(s) 78, 471, 748, 752
AluI AGCT 4 cut(s) 78, 471, 748, 752
Alw21I GWGCWC 1 cut(s) 1001
Alw26I GTCTC 3 cut(s) 261, 368, 721
Alw44I GTGCAC 1 cut(s) 997
AlwI GGATC 2 cut(s) 917, 1048
Ama87I CYCGRG 1 cut(s) 946
Aor13HI TCCGGA 1 cut(s) 199
AoxI GGCC 3 cut(s) 383, 439, 612
ApaLI GTGCAC 1 cut(s) 997
ApeKI GCWGC 3 cut(s) 501, 822, 845
ApoI RAATTY 4 cut(s) 149, 230, 245, 602
ArsI GACNNNNNNTTYG 2 cut(s) 363, 395
AseI ATTAAT 2 cut(s) 1101, 1113
Asp700I GAANNNNTTC 1 cut(s) 91
Asp718I GGTACC 1 cut(s) 272
AspLEI GCGC 1 cut(s) 791
AspS9I GGNCC 4 cut(s) 32, 320, 543, 721
AsuC2I CCSGG 1 cut(s) 541
AsuHPI GGTGA 3 cut(s) 208, 271, 343
AsuNHI GCTAGC 1 cut(s) 748
AvaI CYCGRG 1 cut(s) 946
AvaII GGWCC 4 cut(s) 32, 320, 543, 721
BaeGI GKGCMC 2 cut(s) 953, 1001
BalI TGGCCA 1 cut(s) 614
BanI GGYRCC 2 cut(s) 236, 272
Bbv12I GWGCWC 1 cut(s) 1001
BbvCI CCTCAGC 2 cut(s) 306, 574
BbvI GCAGC 3 cut(s) 488, 809, 832
BccI CCATC 3 cut(s) 281, 284, 1059
BceAI ACGGC 2 cut(s) 206, 646
BcgI CGANNNNNNTGC 4 cut(s) 483, 517, 978, 1012
BciT130I CCWGG 2 cut(s) 438, 982
BcnI CCSGG 1 cut(s) 541
BcoDI GTCTC 3 cut(s) 261, 368, 721
BfaI CTAG 3 cut(s) 110, 342, 749
BfmI CTRYAG 2 cut(s) 387, 904
BisI GCNGC 3 cut(s) 502, 823, 846
BlsI GCNGC 3 cut(s) 503, 824, 847
BmcAI AGTACT 1 cut(s) 818
Bme1390I CCNGG 3 cut(s) 438, 541, 982
Bme18I GGWCC 4 cut(s) 32, 320, 543, 721
BmeT110I CYCGRG 1 cut(s) 946
BmgT120I GGNCC 4 cut(s) 32, 320, 543, 721
BmiI GGNNCC 4 cut(s) 238, 274, 544, 571
BmrFI CCNGG 3 cut(s) 438, 541, 982
BmrI ACTGGG 1 cut(s) 458
BmsI GCATC 3 cut(s) 770, 942, 1068
BmtI GCTAGC 1 cut(s) 752
BmuI ACTGGG 1 cut(s) 458
BpmI CTGGAG 1 cut(s) 545
Bpu10I CCTNAGC 2 cut(s) 306, 574
BpuMI CCSGG 1 cut(s) 541
BsaI GGTCTC 1 cut(s) 721
BsaJI CCNNGG 2 cut(s) 240, 826
BsaWI WCCGGW 1 cut(s) 199
Bsc4I CCNNNNNNNGG 1 cut(s) 683
Bse1I ACTGG 3 cut(s) 442, 464, 562
Bse3DI GCAATG 2 cut(s) 529, 847
BseAI TCCGGA 1 cut(s) 199
BseBI CCWGG 2 cut(s) 438, 982
BseDI CCNNGG 2 cut(s) 240, 826
BseGI GGATG 1 cut(s) 785
BseLI CCNNNNNNNGG 1 cut(s) 683
BseMI GCAATG 2 cut(s) 529, 847
BseMII CTCAG 3 cut(s) 320, 588, 716
BseNI ACTGG 3 cut(s) 442, 464, 562
BseSI GKGCMC 2 cut(s) 953, 1001
BseXI GCAGC 3 cut(s) 488, 809, 832
BseYI CCCAGC 1 cut(s) 586
BsgI GTGCAG 1 cut(s) 336
Bsh1236I CGCG 1 cut(s) 791
Bsh1285I CGRYCG 1 cut(s) 992
BshFI GGCC 3 cut(s) 385, 441, 614
BshNI GGYRCC 2 cut(s) 236, 272
BsiEI CGRYCG 1 cut(s) 992
BsiHKAI GWGCWC 1 cut(s) 1001
BsiHKCI CYCGRG 1 cut(s) 946
BsiSI CCGG 2 cut(s) 200, 540
BslI CCNNNNNNNGG 1 cut(s) 683
BsmAI GTCTC 3 cut(s) 261, 368, 721
BsnI GGCC 3 cut(s) 385, 441, 614
Bso31I GGTCTC 1 cut(s) 721
BsoBI CYCGRG 1 cut(s) 946
Bsp1286I GDGCHC 2 cut(s) 953, 1001
Bsp13I TCCGGA 1 cut(s) 199
Bsp143I GATC 2 cut(s) 922, 1040
BspACI CCGC 6 cut(s) 64, 127, 219, 270, 401, 848
BspANI GGCC 3 cut(s) 385, 441, 614
BspCNI CTCAG 3 cut(s) 319, 587, 717
BspEI TCCGGA 1 cut(s) 199
BspFNI CGCG 1 cut(s) 791
BspLI GGNNCC 4 cut(s) 238, 274, 544, 571
BspMAI CTGCAG 1 cut(s) 391
BspOI GCTAGC 1 cut(s) 752
BspPI GGATC 2 cut(s) 917, 1048
BspT107I GGYRCC 2 cut(s) 236, 272
BspTNI GGTCTC 1 cut(s) 721
BsrDI GCAATG 2 cut(s) 529, 847
BsrI ACTGG 3 cut(s) 442, 464, 562
BssECI CCNNGG 2 cut(s) 240, 826
BssMI GATC 2 cut(s) 922, 1040
Bst2UI CCWGG 2 cut(s) 438, 982
Bst4CI ACNGT 2 cut(s) 379, 908
Bst6I CTCTTC 1 cut(s) 128
BstC8I GCNNGC 3 cut(s) 387, 750, 892
BstDEI CTNAG 4 cut(s) 306, 574, 725, 873
BstF5I GGATG 1 cut(s) 785
BstFNI CGCG 1 cut(s) 791
BstHHI GCGC 1 cut(s) 791
BstKTI GATC 2 cut(s) 925, 1043
BstMAI GTCTC 3 cut(s) 261, 368, 721
BstMBI GATC 2 cut(s) 922, 1040
BstMCI CGRYCG 1 cut(s) 992
BstMWI GCNNNNNNNGC 5 cut(s) 126, 477, 596, 758, 1005
BstNI CCWGG 2 cut(s) 438, 982
BstNSI RCATGY 1 cut(s) 894
BstSCI CCNGG 3 cut(s) 436, 539, 980
BstSFI CTRYAG 2 cut(s) 387, 904
BstSLI GKGCMC 2 cut(s) 953, 1001
BstUI CGCG 1 cut(s) 791
BstV1I GCAGC 3 cut(s) 488, 809, 832
BstXI CCANNNNNNTGG 1 cut(s) 471
BsuRI GGCC 3 cut(s) 385, 441, 614
BtsCI GGATG 1 cut(s) 785
BtsI GCAGTG 4 cut(s) 396, 411, 456, 706
BtsIMutI CAGTG 5 cut(s) 396, 411, 456, 569, 706
Cac8I GCNNGC 3 cut(s) 387, 750, 892
CfoI GCGC 1 cut(s) 791
Cfr13I GGNCC 4 cut(s) 32, 320, 543, 721
Csp6I GTAC 4 cut(s) 102, 273, 687, 817
CviAII CATG 1 cut(s) 891
CviQI GTAC 4 cut(s) 102, 273, 687, 817
DdeI CTNAG 4 cut(s) 306, 574, 725, 873
DpnI GATC 2 cut(s) 924, 1042
DpnII GATC 2 cut(s) 922, 1040
DraI TTTAAA 1 cut(s) 1053
EaeI YGGCCR 1 cut(s) 612
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Eco31I GGTCTC 1 cut(s) 721
Eco47I GGWCC 4 cut(s) 32, 320, 543, 721
Eco88I CYCGRG 1 cut(s) 946
EcoO109I RGGNCCY 2 cut(s) 32, 543
EcoRI GAATTC 2 cut(s) 245, 602
EcoRII CCWGG 2 cut(s) 436, 980
FaeI CATG 1 cut(s) 894
FalI AAGNNNNNCTT 2 cut(s) 608, 640
FatI CATG 1 cut(s) 890
FauI CCCGC 1 cut(s) 57
Fnu4HI GCNGC 3 cut(s) 502, 823, 846
FokI GGATG 1 cut(s) 792
Fsp4HI GCNGC 3 cut(s) 502, 823, 846
FspBI CTAG 3 cut(s) 110, 342, 749
GlaI GCGC 1 cut(s) 790
GluI GCNGC 3 cut(s) 502, 823, 846
GsaI CCCAGC 1 cut(s) 590
GsuI CTGGAG 1 cut(s) 545
HaeIII GGCC 3 cut(s) 385, 441, 614
HapII CCGG 2 cut(s) 200, 540
HhaI GCGC 1 cut(s) 791
Hin1II CATG 1 cut(s) 894
Hin6I GCGC 1 cut(s) 789
HinP1I GCGC 1 cut(s) 789
HincII GTYRAC 1 cut(s) 646
HindII GTYRAC 1 cut(s) 646
HinfI GANTC 4 cut(s) 297, 335, 394, 1018
HpaII CCGG 2 cut(s) 200, 540
HphI GGTGA 3 cut(s) 208, 271, 343
Hpy166II GTNNAC 5 cut(s) 361, 456, 646, 857, 999
Hpy188I TCNGA 2 cut(s) 334, 927
Hpy188III TCNNGA 3 cut(s) 42, 200, 1038
Hpy8I GTNNAC 5 cut(s) 361, 456, 646, 857, 999
Hpy99I CGWCG 2 cut(s) 965, 968
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 2 cut(s) 379, 908
HpyCH4IV ACGT 2 cut(s) 188, 960
HpyCH4V TGCA 7 cut(s) 317, 369, 389, 504, 699, 783, 999
HpyF10VI GCNNNNNNNGC 5 cut(s) 126, 477, 596, 758, 1005
HpyF3I CTNAG 4 cut(s) 306, 574, 725, 873
HpySE526I ACGT 2 cut(s) 188, 960
Hsp92II CATG 1 cut(s) 894
HspAI GCGC 1 cut(s) 789
Kpn2I TCCGGA 1 cut(s) 199
KpnI GGTACC 1 cut(s) 276
Kzo9I GATC 2 cut(s) 922, 1040
LmnI GCTCC 2 cut(s) 83, 569
Lsp1109I GCAGC 3 cut(s) 488, 809, 832
LweI GCATC 3 cut(s) 770, 942, 1068
MaeI CTAG 3 cut(s) 110, 342, 749
MaeII ACGT 2 cut(s) 188, 960
MaeIII GTNAC 2 cut(s) 670, 713
MalI GATC 2 cut(s) 924, 1042
MboI GATC 2 cut(s) 922, 1040
MboII GAAGA 2 cut(s) 115, 781
MfeI CAATTG 1 cut(s) 364
MhlI GDGCHC 2 cut(s) 953, 1001
MlsI TGGCCA 1 cut(s) 614
MluNI TGGCCA 1 cut(s) 614
MmeI TCCRAC 2 cut(s) 274, 950
Mox20I TGGCCA 1 cut(s) 614
MroI TCCGGA 1 cut(s) 199
MroXI GAANNNNTTC 1 cut(s) 91
MscI TGGCCA 1 cut(s) 614
MseI TTAA 5 cut(s) 185, 1052, 1091, 1101, 1113
MslI CAYNNNNRTG 2 cut(s) 221, 1063
Msp20I TGGCCA 1 cut(s) 614
MspA1I CMGCKG 1 cut(s) 270
MspI CCGG 2 cut(s) 200, 540
MspR9I CCNGG 3 cut(s) 438, 541, 982
MunI CAATTG 1 cut(s) 364
MvaI CCWGG 2 cut(s) 438, 982
MvnI CGCG 1 cut(s) 791
MwoI GCNNNNNNNGC 5 cut(s) 126, 477, 596, 758, 1005
NciI CCSGG 1 cut(s) 541
NdeII GATC 2 cut(s) 922, 1040
NheI GCTAGC 1 cut(s) 748
NlaIII CATG 1 cut(s) 894
NlaIV GGNNCC 4 cut(s) 238, 274, 544, 571
NmeAIII GCCGAG 2 cut(s) 265, 851
NmuCI GTSAC 2 cut(s) 670, 713
NspI RCATGY 1 cut(s) 894
OliI CACNNNNGTG 1 cut(s) 221
PaeI GCATGC 1 cut(s) 894
PdmI GAANNNNTTC 1 cut(s) 91
PfeI GAWTC 4 cut(s) 297, 335, 394, 1018
PflFI GACNNNGTC 1 cut(s) 541
PkrI GCNGC 3 cut(s) 503, 824, 847
PpuMI RGGWCCY 2 cut(s) 32, 543
PshBI ATTAAT 2 cut(s) 1101, 1113
PsiI TTATAA 2 cut(s) 23, 147
Psp1406I AACGTT 1 cut(s) 188
Psp5II RGGWCCY 2 cut(s) 32, 543
Psp6I CCWGG 2 cut(s) 436, 980
PspFI CCCAGC 1 cut(s) 586
PspGI CCWGG 2 cut(s) 436, 980
PspN4I GGNNCC 4 cut(s) 238, 274, 544, 571
PspPI GGNCC 4 cut(s) 32, 320, 543, 721
PspPPI RGGWCCY 2 cut(s) 32, 543
PstI CTGCAG 1 cut(s) 391
PsyI GACNNNGTC 1 cut(s) 541
RsaI GTAC 4 cut(s) 103, 274, 688, 818
RsaNI GTAC 4 cut(s) 102, 273, 687, 817
RseI CAYNNNNRTG 2 cut(s) 221, 1063
SaqAI TTAA 5 cut(s) 185, 1052, 1091, 1101, 1113
SatI GCNGC 3 cut(s) 502, 823, 846
Sau3AI GATC 2 cut(s) 922, 1040
Sau96I GGNCC 4 cut(s) 32, 320, 543, 721
ScaI AGTACT 1 cut(s) 818
ScrFI CCNGG 3 cut(s) 438, 541, 982
SduI GDGCHC 2 cut(s) 953, 1001
SfaNI GCATC 3 cut(s) 770, 942, 1068
SfcI CTRYAG 2 cut(s) 387, 904
SinI GGWCC 4 cut(s) 32, 320, 543, 721
SmiMI CAYNNNNRTG 2 cut(s) 221, 1063
SphI GCATGC 1 cut(s) 894
SsiI CCGC 6 cut(s) 64, 127, 219, 270, 401, 848
SspI AATATT 1 cut(s) 775
SspMI CTAG 3 cut(s) 110, 342, 749
StyD4I CCNGG 3 cut(s) 436, 539, 980
TaaI ACNGT 2 cut(s) 379, 908
TaiI ACGT 2 cut(s) 191, 963
TaqI TCGA 3 cut(s) 43, 85, 493
TaqII GACCGA 2 cut(s) 745, 1006
TatI WGTACW 1 cut(s) 816
TfiI GAWTC 4 cut(s) 297, 335, 394, 1018
Tru1I TTAA 5 cut(s) 185, 1052, 1091, 1101, 1113
Tru9I TTAA 5 cut(s) 185, 1052, 1091, 1101, 1113
TscAI CASTG 5 cut(s) 396, 418, 463, 569, 706
TseFI GTSAC 2 cut(s) 670, 713
TseI GCWGC 3 cut(s) 501, 822, 845
Tsp45I GTSAC 2 cut(s) 670, 713
TspDTI ATGAA 1 cut(s) 124
TspGWI ACGGA 2 cut(s) 734, 1011
TspRI CASTG 5 cut(s) 396, 418, 463, 569, 706
Tth111I GACNNNGTC 1 cut(s) 541
VneI GTGCAC 1 cut(s) 997
VpaK11BI GGWCC 4 cut(s) 32, 320, 543, 721
VspI ATTAAT 2 cut(s) 1101, 1113
XapI RAATTY 4 cut(s) 149, 230, 245, 602
XceI RCATGY 1 cut(s) 894
XmnI GAANNNNTTC 1 cut(s) 91
XspI CTAG 3 cut(s) 110, 342, 749
ZrmI AGTACT 1 cut(s) 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.