RLG00000011825

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0011929
Physical Location & Seq
Forward (+)
13066380 .. 13068257
1878 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011825

Sequence Viewer

Length: 1011 bp
ATGGCAACAGAATTCAAAGTGTTCTGGTTACCGGTTTTATTGGTTTCTATGATCATTGTTTCATCAGGACCCAAGTTGTCCGAGTCTGCTAGAATTTTCACCATTATAAACAATTGCAAAGAGACAATCTGGCCTGCAGTATTTCCCGGGGAGAACTTCAACGGTGGTGGCTTTCCACTAAAATCAGGCCAGTCCATTGTATTCACAGCTCCGGTTAGCTGGTCTGGCCGGATATGGGGTCGTACCGGCTGCAACTTTGACAAAAATGGCAATGGAACATGCCAGACTGGGGCATGTGGCACCAGCCTCAAGTGTGGAGGCTCAGGAAACACCCCAGCATCACTTGCTGAATTTACACTTGCGCAGCCAGATTTTTATGATGTTAGTCTTGTTGATGGGTTTAACTTGCCATTGACTATCACACCTGTTAATGGTTCGGGAAATTGCAGTGCTTCTGGTTGTGATGGGGACCTGAGGACTACTTGCCCGAATGAGTTGGCTGTGAAATCAAATGGGAAGACTGTTGGCTGCCGCAGCGCCTGCGATGTGTACAACACTGATGAGTATTGTTGCAGAGGGGTATATGGAAACGCTGCTGTATGTAAACCCACATATTATTCCAAGAAGTTCAAAGAAGCATGCCCTACTGCATATAGTTACGCGTATGATGATCCATCCAGTATTTTCACTTGCTCAGGCACTGATTATATCGTCGCATTCTGCTCATCCAGGAAGCAACCGGTATGTACGTATCATAACAACAAGCTTGTCTGCAGTGGATCAATTGGTTTAAAGTCATTGAGATCGTGGGCGACGATGCTTAACGACGCAATCCTTCTGGGCTCTGGGTGCCTGATCGAAGGTTCGCAGCTTCATGGTAGAGGGCAACGGAGGAAAGGCGGCGGCGAAACAACCACAATATCCTCCAATGGTGGCGCCTTTTCCAATGGAGATGGCAATGTCTGTAATTTTCGGTTTTCACCTGTTTGGGTTGAACCCTTCGTATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

337

Amino Acids

35.76

Weight (kDa)

8.19

Isoelectric Point (pI)

35.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 37 - 242 7.1e-77 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77700 AT1G77700 AT1G77700
fragaria_vesca FvH4_2g26400
malus_domestica MD08G1169300.v1.1 MD15G1355700.v1.1 MD15G1355800.v1.1
prunus_persica Prupe.1G503200_v2.0.a1
pyrus_communis pycom08g14470 pycom15g31790
rosa_chinensis RchiOBHm_Chr6g0294961
rosa_laevigata RLG00000011825
rosa_roxburghii Rroxscaffold_7G00172790
rosa_rugosa Rorug06G0248900
rosa_samantha Rh6AG361900 Rh6BG369400 Rh6CG375900 Rh6DG362500
rosa_wichuraiana Rw6G031580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 107
Acc16I TGCGCA 1 cut(s) 363
AccB1I GGYRCC 3 cut(s) 299, 849, 935
AccII CGCG 1 cut(s) 662
AciI CCGC 3 cut(s) 532, 900, 903
AclWI GGATC 2 cut(s) 665, 787
AcoI YGGCCR 1 cut(s) 226
AcsI RAATTY 3 cut(s) 11, 93, 350
AcyI GRCGYC 1 cut(s) 936
AfaI GTAC 3 cut(s) 244, 551, 748
AfiI CCNNNNNNNGG 3 cut(s) 235, 289, 431
AflIII ACRYGT 1 cut(s) 660
AgeI ACCGGT 2 cut(s) 31, 739
AgsI TTSAA 4 cut(s) 16, 160, 631, 995
AjnI CCWGG 1 cut(s) 728
AluBI AGCT 4 cut(s) 209, 219, 766, 871
AluI AGCT 4 cut(s) 209, 219, 766, 871
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 2 cut(s) 665, 787
AlwNI CAGNNNCTG 2 cut(s) 540, 701
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 3 cut(s) 131, 187, 226
ApeKI GCWGC 6 cut(s) 249, 364, 528, 534, 593, 868
ApoI RAATTY 3 cut(s) 11, 93, 350
AsiGI ACCGGT 2 cut(s) 31, 739
AspLEI GCGC 3 cut(s) 364, 539, 938
AspS9I GGNCC 2 cut(s) 68, 469
AsuC2I CCSGG 2 cut(s) 147, 148
AsuHPI GGTGA 2 cut(s) 91, 972
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 2 cut(s) 68, 469
AxyI CCTNAGG 1 cut(s) 473
BanI GGYRCC 3 cut(s) 299, 849, 935
BanII GRGCYC 1 cut(s) 845
BbsI GAAGAC 1 cut(s) 524
BbvI GCAGC 6 cut(s) 236, 376, 515, 546, 580, 880
BccI CCATC 4 cut(s) 389, 458, 682, 947
BciT130I CCWGG 1 cut(s) 730
BclI TGATCA 1 cut(s) 51
BcnI CCSGG 2 cut(s) 147, 148
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 2 cut(s) 90, 1009
BfmI CTRYAG 2 cut(s) 135, 772
BfoI RGCGCY 2 cut(s) 540, 939
BisI GCNGC 9 cut(s) 250, 365, 529, 532, 535, 594, 869, 901, 904
BlsI GCNGC 9 cut(s) 251, 366, 530, 533, 536, 595, 870, 902, 905
Bme1390I CCNGG 3 cut(s) 147, 148, 730
Bme18I GGWCC 2 cut(s) 68, 469
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 2 cut(s) 68, 469
BmiI GGNNCC 5 cut(s) 70, 301, 470, 851, 937
BmrFI CCNGG 3 cut(s) 147, 148, 730
BmrI ACTGGG 1 cut(s) 297
BmsI GCATC 2 cut(s) 347, 807
BmuI ACTGGG 1 cut(s) 297
BpiI GAAGAC 1 cut(s) 524
Bpu10I CCTNAGC 2 cut(s) 322, 694
BpuEI CTTGAG 1 cut(s) 293
BpuMI CCSGG 2 cut(s) 147, 148
BsaAI YACGTR 1 cut(s) 750
BsaHI GRCGYC 1 cut(s) 936
BsaJI CCNNGG 2 cut(s) 146, 147
BsaWI WCCGGW 3 cut(s) 31, 211, 739
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 289, 431
Bse118I RCCGGY 3 cut(s) 31, 245, 739
Bse1I ACTGG 3 cut(s) 190, 292, 678
Bse21I CCTNAGG 1 cut(s) 473
Bse3DI GCAATG 2 cut(s) 277, 964
BseBI CCWGG 1 cut(s) 730
BseDI CCNNGG 2 cut(s) 146, 147
BseGI GGATG 2 cut(s) 674, 725
BseLI CCNNNNNNNGG 3 cut(s) 235, 289, 431
BseMI GCAATG 2 cut(s) 277, 964
BseMII CTCAG 3 cut(s) 336, 464, 708
BseNI ACTGG 3 cut(s) 190, 292, 678
BseXI GCAGC 6 cut(s) 236, 376, 515, 546, 580, 880
BseYI CCCAGC 1 cut(s) 334
Bsh1236I CGCG 1 cut(s) 662
BshFI GGCC 3 cut(s) 133, 189, 228
BshNI GGYRCC 3 cut(s) 299, 849, 935
BshTI ACCGGT 2 cut(s) 31, 739
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 6 cut(s) 32, 147, 212, 229, 246, 740
BslFI GGGAC 1 cut(s) 482
BslI CCNNNNNNNGG 3 cut(s) 235, 289, 431
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 482
BsmI GAATGC 1 cut(s) 716
BsnI GGCC 3 cut(s) 133, 189, 228
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 845
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 5 cut(s) 51, 670, 779, 803, 855
BspACI CCGC 3 cut(s) 532, 900, 903
BspANI GGCC 3 cut(s) 133, 189, 228
BspCNI CTCAG 3 cut(s) 335, 465, 707
BspFNI CGCG 1 cut(s) 662
BspLI GGNNCC 5 cut(s) 70, 301, 470, 851, 937
BspMAI CTGCAG 2 cut(s) 139, 776
BspPI GGATC 2 cut(s) 665, 787
BspT107I GGYRCC 3 cut(s) 299, 849, 935
BsrDI GCAATG 2 cut(s) 277, 964
BsrFI RCCGGY 3 cut(s) 31, 245, 739
BsrGI TGTACA 1 cut(s) 549
BsrI ACTGG 3 cut(s) 190, 292, 678
BssAI RCCGGY 3 cut(s) 31, 245, 739
BssECI CCNNGG 2 cut(s) 146, 147
BssMI GATC 5 cut(s) 51, 670, 779, 803, 855
BssNI GRCGYC 1 cut(s) 936
Bst2UI CCWGG 1 cut(s) 730
Bst4CI ACNGT 2 cut(s) 164, 523
BstACI GRCGYC 1 cut(s) 936
BstAPI GCANNNNNTGC 2 cut(s) 344, 540
BstAUI TGTACA 1 cut(s) 549
BstBAI YACGTR 1 cut(s) 750
BstC8I GCNNGC 3 cut(s) 135, 541, 640
BstDEI CTNAG 3 cut(s) 322, 473, 694
BstEII GGTNACC 1 cut(s) 27
BstF5I GGATG 2 cut(s) 674, 725
BstFNI CGCG 1 cut(s) 662
BstH2I RGCGCY 2 cut(s) 540, 939
BstHHI GCGC 3 cut(s) 364, 539, 938
BstKTI GATC 5 cut(s) 54, 673, 782, 806, 858
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 5 cut(s) 51, 670, 779, 803, 855
BstMWI GCNNNNNNNGC 5 cut(s) 225, 344, 534, 540, 849
BstNI CCWGG 1 cut(s) 730
BstNSI RCATGY 3 cut(s) 282, 297, 642
BstPI GGTNACC 1 cut(s) 27
BstSCI CCNGG 3 cut(s) 145, 146, 728
BstSFI CTRYAG 2 cut(s) 135, 772
BstSNI TACGTA 1 cut(s) 750
BstUI CGCG 1 cut(s) 662
BstV1I GCAGC 6 cut(s) 236, 376, 515, 546, 580, 880
BstV2I GAAGAC 1 cut(s) 524
Bsu36I CCTNAGG 1 cut(s) 473
BsuRI GGCC 3 cut(s) 133, 189, 228
BtgZI GCGATG 1 cut(s) 558
BtsCI GGATG 2 cut(s) 674, 725
BtsI GCAGTG 2 cut(s) 454, 781
BtsIMutI CAGTG 4 cut(s) 454, 555, 699, 781
Cac8I GCNNGC 3 cut(s) 135, 541, 640
CaiI CAGNNNCTG 2 cut(s) 540, 701
CfoI GCGC 3 cut(s) 364, 539, 938
Cfr10I RCCGGY 3 cut(s) 31, 245, 739
Cfr13I GGNCC 2 cut(s) 68, 469
Cfr9I CCCGGG 1 cut(s) 146
CseI GACGC 1 cut(s) 836
Csp6I GTAC 3 cut(s) 243, 550, 747
CspAI ACCGGT 2 cut(s) 31, 739
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviAII CATG 4 cut(s) 279, 294, 639, 875
CviQI GTAC 3 cut(s) 243, 550, 747
DdeI CTNAG 3 cut(s) 322, 473, 694
DinI GGCGCC 1 cut(s) 937
DpnI GATC 5 cut(s) 53, 672, 781, 805, 857
DpnII GATC 5 cut(s) 51, 670, 779, 803, 855
DraI TTTAAA 1 cut(s) 792
EaeI YGGCCR 1 cut(s) 226
Eco105I TACGTA 1 cut(s) 750
Eco24I GRGCYC 1 cut(s) 845
Eco47I GGWCC 2 cut(s) 68, 469
Eco81I CCTNAGG 1 cut(s) 473
Eco88I CYCGRG 1 cut(s) 146
Eco91I GGTNACC 1 cut(s) 27
EcoO109I RGGNCCY 2 cut(s) 68, 469
EcoO65I GGTNACC 1 cut(s) 27
EcoRI GAATTC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 728
EcoT38I GRGCYC 1 cut(s) 845
EgeI GGCGCC 1 cut(s) 937
EheI GGCGCC 1 cut(s) 937
FaeI CATG 4 cut(s) 282, 297, 642, 878
FaqI GGGAC 1 cut(s) 482
FatI CATG 4 cut(s) 278, 293, 638, 874
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 9 cut(s) 250, 365, 529, 532, 535, 594, 869, 901, 904
FokI GGATG 2 cut(s) 661, 712
FriOI GRGCYC 1 cut(s) 845
Fsp4HI GCNGC 9 cut(s) 250, 365, 529, 532, 535, 594, 869, 901, 904
FspBI CTAG 2 cut(s) 90, 1009
FspI TGCGCA 1 cut(s) 363
GlaI GCGC 3 cut(s) 363, 538, 937
GluI GCNGC 9 cut(s) 250, 365, 529, 532, 535, 594, 869, 901, 904
GsaI CCCAGC 1 cut(s) 338
HaeII RGCGCY 2 cut(s) 540, 939
HaeIII GGCC 3 cut(s) 133, 189, 228
HapII CCGG 6 cut(s) 32, 147, 212, 229, 246, 740
HgaI GACGC 1 cut(s) 836
HhaI GCGC 3 cut(s) 364, 539, 938
Hin1I GRCGYC 1 cut(s) 936
Hin1II CATG 4 cut(s) 282, 297, 642, 878
Hin6I GCGC 3 cut(s) 362, 537, 936
HinP1I GCGC 3 cut(s) 362, 537, 936
HindIII AAGCTT 1 cut(s) 764
HinfI GANTC 1 cut(s) 83
HpaII CCGG 6 cut(s) 32, 147, 212, 229, 246, 740
HphI GGTGA 2 cut(s) 91, 972
Hpy166II GTNNAC 2 cut(s) 550, 605
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 3 cut(s) 66, 324, 438
Hpy8I GTNNAC 2 cut(s) 550, 605
Hpy99I CGWCG 3 cut(s) 716, 817, 830
HpyAV CCTTC 3 cut(s) 845, 854, 1009
HpyCH4III ACNGT 2 cut(s) 164, 523
HpyCH4IV ACGT 1 cut(s) 749
HpyCH4V TGCA 7 cut(s) 117, 137, 252, 447, 573, 650, 774
HpyF10VI GCNNNNNNNGC 5 cut(s) 225, 344, 534, 540, 849
HpyF3I CTNAG 3 cut(s) 322, 473, 694
HpySE526I ACGT 1 cut(s) 749
Hsp92I GRCGYC 1 cut(s) 936
Hsp92II CATG 4 cut(s) 282, 297, 642, 878
HspAI GCGC 3 cut(s) 362, 537, 936
KasI GGCGCC 1 cut(s) 935
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 5 cut(s) 51, 670, 779, 803, 855
LmnI GCTCC 1 cut(s) 214
Lsp1109I GCAGC 6 cut(s) 236, 376, 515, 546, 580, 880
LweI GCATC 2 cut(s) 347, 807
MaeI CTAG 2 cut(s) 90, 1009
MaeII ACGT 1 cut(s) 749
MaeIII GTNAC 2 cut(s) 27, 656
MalI GATC 5 cut(s) 53, 672, 781, 805, 857
MboI GATC 5 cut(s) 51, 670, 779, 803, 855
MboII GAAGA 1 cut(s) 529
MfeI CAATTG 2 cut(s) 112, 783
MhlI GDGCHC 1 cut(s) 845
MluCI AATT 7 cut(s) 11, 93, 112, 350, 442, 783, 967
MluI ACGCGT 1 cut(s) 660
Mly113I GGCGCC 1 cut(s) 936
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 7 cut(s) 311, 317, 468, 569, 875, 885, 934
MseI TTAA 4 cut(s) 402, 429, 791, 822
MspI CCGG 6 cut(s) 32, 147, 212, 229, 246, 740
MspR9I CCNGG 3 cut(s) 147, 148, 730
MunI CAATTG 2 cut(s) 112, 783
Mva1269I GAATGC 1 cut(s) 716
MvaI CCWGG 1 cut(s) 730
MvnI CGCG 1 cut(s) 662
MwoI GCNNNNNNNGC 5 cut(s) 225, 344, 534, 540, 849
NarI GGCGCC 1 cut(s) 936
NciI CCSGG 2 cut(s) 147, 148
NdeII GATC 5 cut(s) 51, 670, 779, 803, 855
NlaIII CATG 4 cut(s) 282, 297, 642, 878
NlaIV GGNNCC 5 cut(s) 70, 301, 470, 851, 937
NsbI TGCGCA 1 cut(s) 363
NspI RCATGY 3 cut(s) 282, 297, 642
PaeI GCATGC 1 cut(s) 642
PcsI WCGNNNNNNNCGW 1 cut(s) 812
PctI GAATGC 1 cut(s) 716
PfoI TCCNGGA 1 cut(s) 728
PinAI ACCGGT 2 cut(s) 31, 739
PkrI GCNGC 9 cut(s) 251, 366, 530, 533, 536, 595, 870, 902, 905
PleI GAGTC 1 cut(s) 91
PluTI GGCGCC 1 cut(s) 939
PpsI GAGTC 1 cut(s) 91
Ppu21I YACGTR 1 cut(s) 750
PpuMI RGGWCCY 2 cut(s) 68, 469
PsiI TTATAA 1 cut(s) 107
Psp5II RGGWCCY 2 cut(s) 68, 469
Psp6I CCWGG 1 cut(s) 728
PspEI GGTNACC 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 334
PspGI CCWGG 1 cut(s) 728
PspN4I GGNNCC 5 cut(s) 70, 301, 470, 851, 937
PspPI GGNCC 2 cut(s) 68, 469
PspPPI RGGWCCY 2 cut(s) 68, 469
PstI CTGCAG 2 cut(s) 139, 776
PstNI CAGNNNCTG 2 cut(s) 540, 701
RsaI GTAC 3 cut(s) 244, 551, 748
RsaNI GTAC 3 cut(s) 243, 550, 747
SaqAI TTAA 4 cut(s) 402, 429, 791, 822
SatI GCNGC 9 cut(s) 250, 365, 529, 532, 535, 594, 869, 901, 904
Sau3AI GATC 5 cut(s) 51, 670, 779, 803, 855
Sau96I GGNCC 2 cut(s) 68, 469
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 3 cut(s) 147, 148, 730
SduI GDGCHC 1 cut(s) 845
SetI ASST 9 cut(s) 211, 221, 427, 474, 752, 768, 865, 873, 985
SfaNI GCATC 2 cut(s) 347, 807
SfcI CTRYAG 2 cut(s) 135, 772
SfoI GGCGCC 1 cut(s) 937
SinI GGWCC 2 cut(s) 68, 469
SmaI CCCGGG 1 cut(s) 148
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
SnaBI TACGTA 1 cut(s) 750
SphI GCATGC 1 cut(s) 642
Sse9I AATT 7 cut(s) 11, 93, 112, 350, 442, 783, 967
SsiI CCGC 3 cut(s) 532, 900, 903
SspDI GGCGCC 1 cut(s) 935
SspMI CTAG 2 cut(s) 90, 1009
StyD4I CCNGG 3 cut(s) 145, 146, 728
TaaI ACNGT 2 cut(s) 164, 523
TaiI ACGT 1 cut(s) 752
TaqI TCGA 1 cut(s) 858
TasI AATT 7 cut(s) 11, 93, 112, 350, 442, 783, 967
TatI WGTACW 1 cut(s) 549
TauI GCSGC 3 cut(s) 534, 903, 906
Tru1I TTAA 4 cut(s) 402, 429, 791, 822
Tru9I TTAA 4 cut(s) 402, 429, 791, 822
TscAI CASTG 4 cut(s) 454, 562, 706, 781
TseI GCWGC 6 cut(s) 249, 364, 528, 534, 593, 868
TspDTI ATGAA 2 cut(s) 51, 863
TspGWI ACGGA 1 cut(s) 904
TspMI CCCGGG 1 cut(s) 146
TspRI CASTG 4 cut(s) 454, 562, 706, 781
VpaK11BI GGWCC 2 cut(s) 68, 469
XapI RAATTY 3 cut(s) 11, 93, 350
XceI RCATGY 3 cut(s) 282, 297, 642
XmaI CCCGGG 1 cut(s) 146
XspI CTAG 2 cut(s) 90, 1009
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.