AT1G77770

Protein of unknown function (DUF1644)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
29246074 .. 29248150
2077 bp
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UTR
Exon/CDS
Intron
AT1G77770.3

Sequence Viewer

Length: 798 bp
ATGGGGAAAATCAAGAAAGTGAATCAAAGGGGTCATATTGCTACACCGTATCCATCACCATGTTGTAAGAAAGAATGGGCTGGCTCAACCTGTCCAGTATGCTTGGAGTCTCCACACAATGCGGTTCTTCTCCTGTGTTCGTCTTATCACAAAGGATGCCGTCCTTACATGTGTGCTACAAGCAGCCGTTTTGCCAACTGCCTTGATCAATACAGGAAATCCTACGGTAACGAAAACTCAGGACAACCCGAGCTTTTGTGTCCACTGTGTAGAGGTCAAGTGAAAGGCTGGACTGTTGTGAAAGATGCTCGGATGCATTTTAACTCCAAGAGAAGGACTTGTATGCAGGATAACTGTTCCTTTTTAGGAAATTTCCGAAAGCTCAAGAAACACATGAAGGAAAAACACCCACATGCTTGCCCAAGAGCCATTGATCCAGCTTTAGAAACTAAATGGAAGAGGCTTGAGAGGGAAAGAGACAGAAGAGACGTGATAAGCACGATAATGTCATCGACACCAGGTGCTGTTGTGTTGGGAGATTATGTGATAGAGCCGCATAACCGAGGTGTTTATGATGAAGAAGACGAAGAAGAAGATTACAGCTCAGATGACTCTCTAAGCAACGGGATACTGGATCTAGAATCATCATGGCAAGGACAAAGCCATCATATTCGGTTTCTTGATATGGAATCAAGTGACTTCGCATCCTCTTCCAGCTCCCCTGCTTCTCCAAGCCGTTCGCTTCACCGTTTGCTCTTTCCAAGGAACCAGAGAGGCGGCAATAGAGGAGCAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

265

Amino Acids

29.98

Weight (kDa)

8.85

Isoelectric Point (pI)

61.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1644 PF07800 30 - 80 3e-24 Protein of unknown function (DUF1644)
DUF1644 PF07800 80 - 166 6.7e-35 Protein of unknown function (DUF1644)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 122, 554, 777
AclWI GGATC 2 cut(s) 428, 642
AcsI RAATTY 1 cut(s) 370
AdeI CACNNNGTG 1 cut(s) 521
AfiI CCNNNNNNNGG 1 cut(s) 333
AflIII ACRYGT 1 cut(s) 168
AjiI CACGTC 1 cut(s) 490
AjnI CCWGG 1 cut(s) 517
AluBI AGCT 5 cut(s) 253, 382, 440, 603, 717
AluI AGCT 5 cut(s) 253, 382, 440, 603, 717
Alw26I GTCTC 3 cut(s) 114, 471, 480
AlwI GGATC 2 cut(s) 428, 642
AlwNI CAGNNNCTG 1 cut(s) 524
Ama87I CYCGRG 1 cut(s) 248
ApeKI GCWGC 1 cut(s) 183
ApoI RAATTY 1 cut(s) 370
AsuHPI GGTGA 2 cut(s) 48, 737
AvaI CYCGRG 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 588
BbvI GCAGC 1 cut(s) 195
BccI CCATC 2 cut(s) 61, 672
BceAI ACGGC 3 cut(s) 144, 171, 720
BciT130I CCWGG 1 cut(s) 519
BciVI GTATCC 2 cut(s) 60, 621
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 3 cut(s) 114, 471, 480
BfaI CTAG 1 cut(s) 638
BfuI GTATCC 2 cut(s) 60, 621
BisI GCNGC 3 cut(s) 184, 554, 778
BlsI GCNGC 3 cut(s) 185, 555, 779
Bme1390I CCNGG 1 cut(s) 519
BmeT110I CYCGRG 1 cut(s) 248
BmgBI CACGTC 1 cut(s) 490
BmiI GGNNCC 1 cut(s) 767
BmrFI CCNGG 1 cut(s) 519
BmsI GCATC 4 cut(s) 146, 295, 303, 713
BpiI GAAGAC 1 cut(s) 588
BpuEI CTTGAG 2 cut(s) 368, 485
BsaJI CCNNGG 2 cut(s) 562, 761
BsaXI ACNNNNNCTCC 2 cut(s) 528, 558
Bsc4I CCNNNNNNNGG 1 cut(s) 333
Bse1I ACTGG 2 cut(s) 95, 636
BseBI CCWGG 1 cut(s) 519
BseDI CCNNGG 2 cut(s) 562, 761
BseGI GGATG 3 cut(s) 161, 318, 704
BseLI CCNNNNNNNGG 1 cut(s) 333
BseMII CTCAG 2 cut(s) 252, 618
BseNI ACTGG 2 cut(s) 95, 636
BseXI GCAGC 1 cut(s) 195
BsiHKCI CYCGRG 1 cut(s) 248
BslI CCNNNNNNNGG 1 cut(s) 333
BsmAI GTCTC 3 cut(s) 114, 471, 480
BsmBI CGTCTC 1 cut(s) 480
BsoBI CYCGRG 1 cut(s) 248
Bsp143I GATC 3 cut(s) 205, 433, 634
BspACI CCGC 3 cut(s) 122, 554, 777
BspCNI CTCAG 2 cut(s) 251, 617
BspLI GGNNCC 1 cut(s) 767
BspPI GGATC 2 cut(s) 428, 642
BsrI ACTGG 2 cut(s) 95, 636
BssECI CCNNGG 2 cut(s) 562, 761
BssMI GATC 3 cut(s) 205, 433, 634
BssT1I CCWWGG 1 cut(s) 761
Bst2UI CCWGG 1 cut(s) 519
Bst4CI ACNGT 6 cut(s) 48, 227, 267, 295, 356, 749
Bst6I CTCTTC 3 cut(s) 452, 478, 715
BstC8I GCNNGC 2 cut(s) 82, 418
BstDEI CTNAG 3 cut(s) 238, 604, 617
BstF5I GGATG 3 cut(s) 161, 318, 704
BstKTI GATC 3 cut(s) 208, 436, 637
BstMAI GTCTC 3 cut(s) 114, 471, 480
BstMBI GATC 3 cut(s) 205, 433, 634
BstNI CCWGG 1 cut(s) 519
BstNSI RCATGY 2 cut(s) 172, 416
BstSCI CCNGG 1 cut(s) 517
BstV1I GCAGC 1 cut(s) 195
BstV2I GAAGAC 1 cut(s) 588
BstX2I RGATCY 1 cut(s) 634
BstYI RGATCY 1 cut(s) 634
BsuI GTATCC 2 cut(s) 60, 621
BtrI CACGTC 1 cut(s) 490
BtsCI GGATG 3 cut(s) 161, 318, 704
BtsIMutI CAGTG 1 cut(s) 263
Cac8I GCNNGC 2 cut(s) 82, 418
CaiI CAGNNNCTG 1 cut(s) 524
CsiI ACCWGGT 1 cut(s) 517
CviAII CATG 5 cut(s) 60, 169, 394, 413, 648
DdeI CTNAG 3 cut(s) 238, 604, 617
DpnI GATC 3 cut(s) 207, 435, 636
DpnII GATC 3 cut(s) 205, 433, 634
DraIII CACNNNGTG 1 cut(s) 521
Eam1104I CTCTTC 3 cut(s) 452, 478, 715
EarI CTCTTC 3 cut(s) 452, 478, 715
Eco130I CCWWGG 1 cut(s) 761
Eco88I CYCGRG 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 761
EcoT22I ATGCAT 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 761
Esp3I CGTCTC 1 cut(s) 480
FaeI CATG 5 cut(s) 63, 172, 397, 416, 651
FatI CATG 5 cut(s) 59, 168, 393, 412, 647
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 3 cut(s) 184, 554, 778
FokI GGATG 3 cut(s) 168, 325, 691
Fsp4HI GCNGC 3 cut(s) 184, 554, 778
FspBI CTAG 1 cut(s) 638
GluI GCNGC 3 cut(s) 184, 554, 778
Hin1II CATG 5 cut(s) 63, 172, 397, 416, 651
HinfI GANTC 5 cut(s) 22, 107, 611, 641, 689
HphI GGTGA 2 cut(s) 48, 737
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 3 cut(s) 312, 377, 607
Hpy188III TCNNGA 5 cut(s) 13, 240, 385, 638, 680
Hpy8I GTNNAC 1 cut(s) 263
HpyAV CCTTC 2 cut(s) 327, 391
HpyCH4III ACNGT 6 cut(s) 48, 227, 267, 295, 356, 749
HpyCH4IV ACGT 1 cut(s) 489
HpyCH4V TGCA 2 cut(s) 316, 346
HpyF3I CTNAG 3 cut(s) 238, 604, 617
HpySE526I ACGT 1 cut(s) 489
Hsp92II CATG 5 cut(s) 63, 172, 397, 416, 651
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 3 cut(s) 205, 433, 634
LmnI GCTCC 2 cut(s) 722, 788
Lsp1109I GCAGC 1 cut(s) 195
LweI GCATC 4 cut(s) 146, 295, 303, 713
MabI ACCWGGT 1 cut(s) 517
MaeI CTAG 1 cut(s) 638
MaeII ACGT 1 cut(s) 489
MaeIII GTNAC 2 cut(s) 227, 695
MalI GATC 3 cut(s) 207, 435, 636
MboI GATC 3 cut(s) 205, 433, 634
MboII GAAGA 9 cut(s) 119, 469, 495, 590, 593, 599, 602, 605, 702
MflI RGATCY 1 cut(s) 634
MluCI AATT 1 cut(s) 370
MlyI GAGTC 2 cut(s) 116, 605
MnlI CCTC 7 cut(s) 266, 453, 462, 557, 718, 767, 779
Mph1103I ATGCAT 1 cut(s) 318
MseI TTAA 1 cut(s) 321
MslI CAYNNNNRTG 3 cut(s) 58, 411, 503
MspR9I CCNGG 1 cut(s) 519
MvaI CCWGG 1 cut(s) 519
NdeII GATC 3 cut(s) 205, 433, 634
NlaIII CATG 5 cut(s) 63, 172, 397, 416, 651
NlaIV GGNNCC 1 cut(s) 767
NmuCI GTSAC 1 cut(s) 695
NsiI ATGCAT 1 cut(s) 318
NspI RCATGY 2 cut(s) 172, 416
PciI ACATGT 1 cut(s) 168
PfeI GAWTC 3 cut(s) 22, 641, 689
PkrI GCNGC 3 cut(s) 185, 555, 779
PleI GAGTC 2 cut(s) 115, 605
PpsI GAGTC 2 cut(s) 115, 605
PscI ACATGT 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 517
PspGI CCWGG 1 cut(s) 517
PspN4I GGNNCC 1 cut(s) 767
PstNI CAGNNNCTG 1 cut(s) 524
PsuI RGATCY 1 cut(s) 634
RseI CAYNNNNRTG 3 cut(s) 58, 411, 503
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 3 cut(s) 184, 554, 778
Sau3AI GATC 3 cut(s) 205, 433, 634
SchI GAGTC 2 cut(s) 116, 605
ScrFI CCNGG 1 cut(s) 519
SexAI ACCWGGT 1 cut(s) 517
SfaNI GCATC 4 cut(s) 146, 295, 303, 713
SmiMI CAYNNNNRTG 3 cut(s) 58, 411, 503
SmlI CTYRAG 2 cut(s) 383, 464
SmoI CTYRAG 2 cut(s) 383, 464
Sse9I AATT 1 cut(s) 370
SsiI CCGC 3 cut(s) 122, 554, 777
SspMI CTAG 1 cut(s) 638
StyD4I CCNGG 1 cut(s) 517
StyI CCWWGG 1 cut(s) 761
TaaI ACNGT 6 cut(s) 48, 227, 267, 295, 356, 749
TaiI ACGT 1 cut(s) 492
TaqI TCGA 1 cut(s) 512
TasI AATT 1 cut(s) 370
TauI GCSGC 2 cut(s) 556, 780
TfiI GAWTC 3 cut(s) 22, 641, 689
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 1 cut(s) 695
TseI GCWGC 1 cut(s) 183
Tsp45I GTSAC 1 cut(s) 695
TspDTI ATGAA 2 cut(s) 410, 591
TspRI CASTG 1 cut(s) 270
XapI RAATTY 1 cut(s) 370
XbaI TCTAGA 1 cut(s) 637
XceI RCATGY 2 cut(s) 172, 416
XspI CTAG 1 cut(s) 638
Zsp2I ATGCAT 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.