Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006060

Physical Location & Seq

Genomic Coordinates Reverse (-)

41754088 .. 41757994

Gene Structure 3907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G505600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCTAAAGTTAACAAGTTGCGACGTGGATCTGACTCCCAAGCTTTAAGGATGTCCCGGTACCCATTAAAGGTTCTTAAAGGCGTCCATTCAAAAAAGAAATCTCACAAAGCAGTGGAAAAGAAAGATTGGGAAGATGCGACCTGTTCAGTCTGTATGGAGTTCCCTCACAATGCTGTTCTCCTTCTTTGTTCCTCTTATAATAAGGGTTGTCGCCCTTATATGTGTGCTACTGGCCATCGGTATTCCAACTGTCTTGAACAATACAAGAAAGCATACACAAAAGTATGTTCAATTCAAAGTTCGCAACCATGGACTGGATCAATGGATAGTTTAGGTTTGAATTTAACTGAAGGTGAGCGCAATGAAAAGACGGAATTACCGGAGCTTTTGTGCCCGCTTTGTCGGGGGCAAGTGAAGGGTTGGACCGTGGTGGAACGAGCGCGGAAATATCTCAATGCCAAGAAGAGAACTTGCATGCAGGATAACTGTTCATTTGCTGGAAGTTATAAAGAGCTCAGGAAACATGTTAAGTCAAAGCACCCATTGGCACGGCCTCGAGCAGTGGATCCGCTACTTCAAGAAAAATGGAAGAGGCTTGAGTGTGAAAGAGAGCGGAGTGATGTTATTAGCACAATAATGTCATCTACGCCAAGGGCAGTGATCGTGGGGGATTATGTGCTGGAGCCAAACAACGGTGGCATTTATAGTGATTCTGATTCTGATTCTGATTCTGATCTAGATGATTACATGGATGATTTAAGGTTAGGGTCATTTGATTTTGGAATCATCCCACGGAGTAGGTATCAAAGGGACTACGACTCATTGGATGAGGATGATTTTTCGCATGCTGCAGCCTCTAATTCTGCTGCTGCACCACGACGTAATTATCGAAGAGGCTATATAAGGGTTCGAAGGGCTGGAAGGGTTAGGGGGCAGGCGCATCGTGGAAATAGAGAAGCCGGGCGATTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1644

Protein Analysis

326

Amino Acids

37.11

Weight (kDa)

9.41

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006060)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77770 AT1G77770 AT1G77770 AT4G08460 AT4G08460 AT4G08460 AT4G08460
fragaria_vesca	FvH4_5g38990 FvH4_5g38990
malus_domestica	MD08G1172600.v1.1 MD15G1358200.v1.1
prunus_persica	Prupe.1G505600_v2.0.a1 Prupe.1G505600_v2.0.a1
pyrus_communis	pycom08g14740 pycom15g32050
rosa_chinensis	RchiOBHm_Chr7g0240961
rosa_laevigata	RLG00000000611
rosa_multiflora	Rmu_ssc0000392.1_g000009
rosa_roxburghii	Rroxscaffold_3G00219380
rosa_rugosa	Rorug07G0340600 Rorug07G0340700 Rorug07G0340800
rosa_samantha	Rh7AG495600 Rh7BG467000 Rh7CG513100 Rh7DG480200
rosa_wichuraiana	Rw7G041880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	201, 510
Acc65I	GGTACC	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	60
AccB7I	CCANNNNNTGG	1 cut(s)	317
AccBSI	CCGCTC	1 cut(s)	616
AccII	CGCG	1 cut(s)	445
AciI	CCGC	4 cut(s)	398, 445, 572, 616
AclWI	GGATC	4 cut(s)	37, 328, 563, 576
AcoI	YGGCCR	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	343
AcuI	CTGAAG	1 cut(s)	372
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	3 cut(s)	70, 317, 695
AflIII	ACRYGT	1 cut(s)	526
AgsI	TTSAA	6 cut(s)	93, 260, 294, 299, 343, 581
AjiI	CACGTC	1 cut(s)	26
AluBI	AGCT	3 cut(s)	44, 388, 517
AluI	AGCT	3 cut(s)	44, 388, 517
Alw21I	GWGCWC	1 cut(s)	519
AlwI	GGATC	4 cut(s)	37, 328, 563, 576
Ama87I	CYCGRG	1 cut(s)	558
AoxI	GGCC	2 cut(s)	235, 554
ApeKI	GCWGC	4 cut(s)	851, 854, 869, 872
ApoI	RAATTY	1 cut(s)	343
Asp718I	GGTACC	1 cut(s)	60
AspLEI	GCGC	3 cut(s)	363, 445, 943
AspS9I	GGNCC	1 cut(s)	426
AsuC2I	CCSGG	2 cut(s)	58, 964
AsuHPI	GGTGA	1 cut(s)	368
AsuII	TTCGAA	1 cut(s)	913
AvaI	CYCGRG	1 cut(s)	558
AvaII	GGWCC	1 cut(s)	426
BaeGI	GKGCMC	1 cut(s)	398
BalI	TGGCCA	1 cut(s)	237
BamHI	GGATCC	1 cut(s)	568
BanI	GGYRCC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	519
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	4 cut(s)	838, 856, 859, 866
BccI	CCATC	1 cut(s)	246
BceAI	ACGGC	1 cut(s)	569
BcgI	CGANNNNNNTGC	2 cut(s)	926, 960
BcnI	CCSGG	2 cut(s)	58, 964
BfaI	CTAG	1 cut(s)	740
BfmI	CTRYAG	1 cut(s)	852
BisI	GCNGC	4 cut(s)	852, 855, 870, 873
BlsI	GCNGC	4 cut(s)	853, 856, 871, 874
Bme1390I	CCNGG	2 cut(s)	58, 964
Bme18I	GGWCC	1 cut(s)	426
BmeT110I	CYCGRG	1 cut(s)	558
BmgBI	CACGTC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	426
BmiI	GGNNCC	3 cut(s)	62, 570, 687
BmrFI	CCNGG	2 cut(s)	58, 964
BmsI	GCATC	2 cut(s)	127, 952
BpmI	CTGGAG	1 cut(s)	704
Bpu10I	CCTNAGC	1 cut(s)	518
Bpu14I	TTCGAA	1 cut(s)	913
BpuEI	CTTGAG	1 cut(s)	620
BpuMI	CCSGG	2 cut(s)	58, 964
BsaBI	GATNNNNATC	1 cut(s)	735
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	4 cut(s)	311, 429, 653, 794
BsaWI	WCCGGW	1 cut(s)	382
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 317, 695
Bse1I	ACTGG	2 cut(s)	238, 322
Bse3DI	GCAATG	1 cut(s)	370
Bse8I	GATNNNNATC	1 cut(s)	735
BseDI	CCNNGG	4 cut(s)	311, 429, 653, 794
BseGI	GGATG	5 cut(s)	57, 760, 789, 835, 841
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	3 cut(s)	70, 317, 695
BseMI	GCAATG	1 cut(s)	370
BseMII	CTCAG	1 cut(s)	532
BseNI	ACTGG	2 cut(s)	238, 322
BseSI	GKGCMC	1 cut(s)	398
BseXI	GCAGC	4 cut(s)	838, 856, 859, 866
BsgI	GTGCAG	1 cut(s)	858
Bsh1236I	CGCG	1 cut(s)	445
BshFI	GGCC	2 cut(s)	237, 556
BshNI	GGYRCC	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	519
BsiHKCI	CYCGRG	1 cut(s)	558
BsiSI	CCGG	3 cut(s)	58, 383, 963
BslFI	GGGAC	2 cut(s)	40, 827
BslI	CCNNNNNNNGG	3 cut(s)	70, 317, 695
BsmFI	GGGAC	2 cut(s)	40, 827
BsnI	GGCC	2 cut(s)	237, 556
BsoBI	CYCGRG	1 cut(s)	558
Bsp119I	TTCGAA	1 cut(s)	913
Bsp1286I	GDGCHC	2 cut(s)	398, 519
Bsp143I	GATC	5 cut(s)	29, 320, 568, 663, 736
Bsp19I	CCATGG	1 cut(s)	311
BspACI	CCGC	4 cut(s)	398, 445, 572, 616
BspANI	GGCC	2 cut(s)	237, 556
BspCNI	CTCAG	1 cut(s)	531
BspFNI	CGCG	1 cut(s)	445
BspLI	GGNNCC	3 cut(s)	62, 570, 687
BspMAI	CTGCAG	1 cut(s)	856
BspPI	GGATC	4 cut(s)	37, 328, 563, 576
BspT104I	TTCGAA	1 cut(s)	913
BspT107I	GGYRCC	1 cut(s)	60
BsrBI	CCGCTC	1 cut(s)	616
BsrDI	GCAATG	1 cut(s)	370
BsrI	ACTGG	2 cut(s)	238, 322
BssECI	CCNNGG	4 cut(s)	311, 429, 653, 794
BssMI	GATC	5 cut(s)	29, 320, 568, 663, 736
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	2 cut(s)	311, 653
Bst4CI	ACNGT	4 cut(s)	254, 430, 491, 698
Bst6I	CTCTTC	3 cut(s)	461, 587, 889
BstACI	GRCGYC	1 cut(s)	84
BstBI	TTCGAA	1 cut(s)	913
BstC8I	GCNNGC	4 cut(s)	398, 479, 849, 939
BstDEI	CTNAG	1 cut(s)	518
BstDSI	CCRYGG	3 cut(s)	311, 429, 794
BstF5I	GGATG	5 cut(s)	57, 760, 789, 835, 841
BstFNI	CGCG	1 cut(s)	445
BstHHI	GCGC	3 cut(s)	363, 445, 943
BstKTI	GATC	5 cut(s)	32, 323, 571, 666, 739
BstMBI	GATC	5 cut(s)	29, 320, 568, 663, 736
BstNSI	RCATGY	3 cut(s)	481, 530, 851
BstSCI	CCNGG	2 cut(s)	56, 962
BstSFI	CTRYAG	1 cut(s)	852
BstSLI	GKGCMC	1 cut(s)	398
BstUI	CGCG	1 cut(s)	445
BstV1I	GCAGC	4 cut(s)	838, 856, 859, 866
BstX2I	RGATCY	2 cut(s)	29, 568
BstYI	RGATCY	2 cut(s)	29, 568
BsuRI	GGCC	2 cut(s)	237, 556
BtgI	CCRYGG	3 cut(s)	311, 429, 794
BtrI	CACGTC	1 cut(s)	26
BtsCI	GGATG	5 cut(s)	57, 760, 789, 835, 841
BtsI	GCAGTG	3 cut(s)	120, 570, 666
BtsIMutI	CAGTG	3 cut(s)	120, 570, 666
Cac8I	GCNNGC	4 cut(s)	398, 479, 849, 939
CfoI	GCGC	3 cut(s)	363, 445, 943
Cfr13I	GGNCC	1 cut(s)	426
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	5 cut(s)	312, 478, 527, 751, 848
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	1 cut(s)	518
DpnI	GATC	5 cut(s)	31, 322, 570, 665, 738
DpnII	GATC	5 cut(s)	29, 320, 568, 663, 736
EaeI	YGGCCR	1 cut(s)	235
Eam1104I	CTCTTC	3 cut(s)	461, 587, 889
EarI	CTCTTC	3 cut(s)	461, 587, 889
Ecl136II	GAGCTC	1 cut(s)	517
Eco130I	CCWWGG	2 cut(s)	311, 653
Eco24I	GRGCYC	1 cut(s)	519
Eco47I	GGWCC	1 cut(s)	426
Eco53kI	GAGCTC	1 cut(s)	517
Eco57I	CTGAAG	1 cut(s)	372
Eco88I	CYCGRG	1 cut(s)	558
EcoICRI	GAGCTC	1 cut(s)	517
EcoT14I	CCWWGG	2 cut(s)	311, 653
EcoT38I	GRGCYC	1 cut(s)	519
ErhI	CCWWGG	2 cut(s)	311, 653
FaeI	CATG	5 cut(s)	315, 481, 530, 754, 851
FaqI	GGGAC	2 cut(s)	40, 827
FatI	CATG	5 cut(s)	311, 477, 526, 750, 847
FauI	CCCGC	1 cut(s)	405
Fnu4HI	GCNGC	4 cut(s)	852, 855, 870, 873
FokI	GGATG	5 cut(s)	64, 767, 776, 842, 848
FriOI	GRGCYC	1 cut(s)	519
Fsp4HI	GCNGC	4 cut(s)	852, 855, 870, 873
FspBI	CTAG	1 cut(s)	740
GlaI	GCGC	3 cut(s)	362, 444, 942
GluI	GCNGC	4 cut(s)	852, 855, 870, 873
GsuI	CTGGAG	1 cut(s)	704
HaeIII	GGCC	2 cut(s)	237, 556
HapII	CCGG	3 cut(s)	58, 383, 963
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	3 cut(s)	363, 445, 943
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	5 cut(s)	315, 481, 530, 754, 851
Hin6I	GCGC	3 cut(s)	361, 443, 941
HinP1I	GCGC	3 cut(s)	361, 443, 941
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HindIII	AAGCTT	1 cut(s)	42
HinfI	GANTC	7 cut(s)	35, 713, 719, 725, 731, 786, 821
HpaI	GTTAAC	1 cut(s)	13
HpaII	CCGG	3 cut(s)	58, 383, 963
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	5 cut(s)	34, 718, 724, 730, 736
Hpy188III	TCNNGA	4 cut(s)	257, 520, 581, 740
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	2 cut(s)	27, 885
HpyAV	CCTTC	5 cut(s)	194, 347, 412, 909, 918
HpyCH4III	ACNGT	4 cut(s)	254, 430, 491, 698
HpyCH4IV	ACGT	2 cut(s)	25, 883
HpyCH4V	TGCA	4 cut(s)	477, 481, 854, 875
HpyF3I	CTNAG	1 cut(s)	518
HpySE526I	ACGT	2 cut(s)	25, 883
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	5 cut(s)	315, 481, 530, 754, 851
HspAI	GCGC	3 cut(s)	361, 443, 941
KpnI	GGTACC	1 cut(s)	64
KspAI	GTTAAC	1 cut(s)	13
Kzo9I	GATC	5 cut(s)	29, 320, 568, 663, 736
LmnI	GCTCC	2 cut(s)	385, 685
Lsp1109I	GCAGC	4 cut(s)	838, 856, 859, 866
LweI	GCATC	2 cut(s)	127, 952
MaeI	CTAG	1 cut(s)	740
MaeII	ACGT	2 cut(s)	25, 883
MalI	GATC	5 cut(s)	31, 322, 570, 665, 738
MbiI	CCGCTC	1 cut(s)	616
MboI	GATC	5 cut(s)	29, 320, 568, 663, 736
MboII	GAAGA	4 cut(s)	146, 478, 604, 906
MflI	RGATCY	2 cut(s)	29, 568
MhlI	GDGCHC	2 cut(s)	398, 519
MlsI	TGGCCA	1 cut(s)	237
MluCI	AATT	5 cut(s)	294, 343, 377, 862, 886
MluNI	TGGCCA	1 cut(s)	237
MlyI	GAGTC	2 cut(s)	29, 815
MmeI	TCCRAC	2 cut(s)	273, 404
MnlI	CCTC	7 cut(s)	177, 205, 567, 588, 826, 868, 890
Mox20I	TGGCCA	1 cut(s)	237
MscI	TGGCCA	1 cut(s)	237
MseI	TTAA	7 cut(s)	12, 47, 68, 78, 347, 531, 761
MslI	CAYNNNNRTG	1 cut(s)	638
Msp20I	TGGCCA	1 cut(s)	237
MspI	CCGG	3 cut(s)	58, 383, 963
MspR9I	CCNGG	2 cut(s)	58, 964
MvnI	CGCG	1 cut(s)	445
NciI	CCSGG	2 cut(s)	58, 964
NcoI	CCATGG	1 cut(s)	311
NdeII	GATC	5 cut(s)	29, 320, 568, 663, 736
NlaIII	CATG	5 cut(s)	315, 481, 530, 754, 851
NlaIV	GGNNCC	3 cut(s)	62, 570, 687
NspI	RCATGY	3 cut(s)	481, 530, 851
NspV	TTCGAA	1 cut(s)	913
PaeI	GCATGC	2 cut(s)	481, 851
PaeR7I	CTCGAG	1 cut(s)	558
PciI	ACATGT	1 cut(s)	526
PcsI	WCGNNNNNNNCGW	1 cut(s)	889
PfeI	GAWTC	5 cut(s)	713, 719, 725, 731, 786
PflMI	CCANNNNNTGG	1 cut(s)	317
PkrI	GCNGC	4 cut(s)	853, 856, 871, 874
PleI	GAGTC	2 cut(s)	29, 815
PpsI	GAGTC	2 cut(s)	29, 815
PscI	ACATGT	1 cut(s)	526
PsiI	TTATAA	2 cut(s)	201, 510
Psp124BI	GAGCTC	1 cut(s)	519
PspN4I	GGNNCC	3 cut(s)	62, 570, 687
PspPI	GGNCC	1 cut(s)	426
PspXI	VCTCGAGB	1 cut(s)	558
PstI	CTGCAG	1 cut(s)	856
PsuI	RGATCY	2 cut(s)	29, 568
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	638
SacI	GAGCTC	1 cut(s)	519
SaqAI	TTAA	7 cut(s)	12, 47, 68, 78, 347, 531, 761
SatI	GCNGC	4 cut(s)	852, 855, 870, 873
Sau3AI	GATC	5 cut(s)	29, 320, 568, 663, 736
Sau96I	GGNCC	1 cut(s)	426
SchI	GAGTC	2 cut(s)	29, 815
ScrFI	CCNGG	2 cut(s)	58, 964
SduI	GDGCHC	2 cut(s)	398, 519
SfaNI	GCATC	2 cut(s)	127, 952
SfcI	CTRYAG	1 cut(s)	852
Sfr274I	CTCGAG	1 cut(s)	558
SfuI	TTCGAA	1 cut(s)	913
SinI	GGWCC	1 cut(s)	426
SlaI	CTCGAG	1 cut(s)	558
SmiMI	CAYNNNNRTG	1 cut(s)	638
SmlI	CTYRAG	2 cut(s)	558, 599
SmoI	CTYRAG	2 cut(s)	558, 599
SphI	GCATGC	2 cut(s)	481, 851
Sse9I	AATT	5 cut(s)	294, 343, 377, 862, 886
SsiI	CCGC	4 cut(s)	398, 445, 572, 616
SspMI	CTAG	1 cut(s)	740
SstI	GAGCTC	1 cut(s)	519
StyD4I	CCNGG	2 cut(s)	56, 962
StyI	CCWWGG	2 cut(s)	311, 653
TaaI	ACNGT	4 cut(s)	254, 430, 491, 698
TaiI	ACGT	2 cut(s)	28, 886
TaqI	TCGA	3 cut(s)	559, 892, 913
TasI	AATT	5 cut(s)	294, 343, 377, 862, 886
TfiI	GAWTC	5 cut(s)	713, 719, 725, 731, 786
Tru1I	TTAA	7 cut(s)	12, 47, 68, 78, 347, 531, 761
Tru9I	TTAA	7 cut(s)	12, 47, 68, 78, 347, 531, 761
TscAI	CASTG	3 cut(s)	120, 570, 666
TseI	GCWGC	4 cut(s)	851, 854, 869, 872
TspDTI	ATGAA	2 cut(s)	381, 483
TspGWI	ACGGA	2 cut(s)	389, 811
TspRI	CASTG	3 cut(s)	120, 570, 666
Van91I	CCANNNNNTGG	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	426
XapI	RAATTY	1 cut(s)	343
XbaI	TCTAGA	1 cut(s)	739
XceI	RCATGY	3 cut(s)	481, 530, 851
XhoI	CTCGAG	1 cut(s)	558
XspI	CTAG	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.