AT4G08460

Protein of unknown function (DUF1644)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
5377064 .. 5380882
3819 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G08460.3

Sequence Viewer

Length: 825 bp
ATGGGGAGAACTAAGGAGCAGGCAACATTAACTCGGTATCCACCCTGTCCTAGGAATCCTGCTAAATTCAATGATATAAACAAAGCACTCCAGGAAAAAGGATATGGTAAGGCTCTGAAAAGAAAACCTTGGACGGGTGTGACATGCCCTGTCTGTCTTGAGGTTCCTCACAACTCGGTCGTCCTCCTTTGTTCATCTTACCACAAAGGATGCCGTCCGTACATGTGTGCCACGGGAAACCGTTTCTCAAATTGTCTAGAGCAGTACAAAAAGGCATATGCCAAGGATGAGAAAAGTGACAAACCGCCAGAGCTATTGTGCCCGCTTTGTAGGGGTCAGGTGAAAGGCTGGACCGTTGTGGAAAAGGAACGTAAGTATCTGAATTCTAAGAAAAGGTCATGCATGAACGACGAGTGTTTGTTTTATGGAAGCTATAGACAGCTCAAGAAGCATGTTAAGGAGAACCATCCGAGAGCCAAGCCAAGAGCCATAGACCCTGTGCTGGAGGCGAAATGGAAGAAGCTTGAGGTTGAGAGGGAGAGGAGTGATGTAATCAGCACAGTCATGTCGTCAACACCTGGGGCTATGGTATTTGGAGACTATGTGATTGAGCCATACAATGGTTATGATCATCAAGATGACAGTGACGATTACAGTGATTCGTCGGATGACGAAATGGAAGGTGGGGTATTCGAGCTTGGAGCATTCGACCTGGGCCGTCTTCAACCGCGTTCGGCTGCCATCTCAAGCCGGGGAATTCGCGGTATGATCATAAGGAACCGGTGGGCTCGAAGCAGAGGTGCGAGCAGAAGGCGACAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

274

Amino Acids

31.3

Weight (kDa)

9.37

Isoelectric Point (pI)

52.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1644 PF07800 47 - 101 2.5e-24 Protein of unknown function (DUF1644)
DUF1644 PF07800 100 - 186 2.6e-35 Protein of unknown function (DUF1644)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 620
AccII CGCG 2 cut(s) 730, 762
AciI CCGC 4 cut(s) 305, 323, 728, 762
AcsI RAATTY 3 cut(s) 65, 382, 756
AfaI GTAC 2 cut(s) 221, 266
AfiI CCNNNNNNNGG 4 cut(s) 51, 134, 502, 620
AflIII ACRYGT 1 cut(s) 222
AgeI ACCGGT 1 cut(s) 780
AgsI TTSAA 2 cut(s) 70, 725
AjnI CCWGG 3 cut(s) 90, 577, 711
AluBI AGCT 5 cut(s) 313, 432, 442, 523, 697
AluI AGCT 5 cut(s) 313, 432, 442, 523, 697
Alw26I GTCTC 1 cut(s) 591
AoxI GGCC 1 cut(s) 715
ApeKI GCWGC 1 cut(s) 737
ApoI RAATTY 3 cut(s) 65, 382, 756
AsiGI ACCGGT 1 cut(s) 780
AspA2I CCTAGG 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 351, 715
AsuC2I CCSGG 1 cut(s) 752
AsuHPI GGTGA 1 cut(s) 352
AvaII GGWCC 1 cut(s) 351
AvrII CCTAGG 1 cut(s) 50
BaeGI GKGCMC 1 cut(s) 323
BaeI ACNNNNGTAYC 2 cut(s) 359, 392
BanII GRGCYC 1 cut(s) 790
BbsI GAAGAC 1 cut(s) 713
BbvI GCAGC 1 cut(s) 724
BccI CCATC 2 cut(s) 474, 749
BceAI ACGGC 2 cut(s) 198, 702
BciT130I CCWGG 3 cut(s) 92, 579, 713
BciVI GTATCC 1 cut(s) 48
BclI TGATCA 2 cut(s) 628, 768
BcnI CCSGG 1 cut(s) 752
BcoDI GTCTC 1 cut(s) 591
BfaI CTAG 2 cut(s) 51, 257
BfmI CTRYAG 1 cut(s) 433
BfuI GTATCC 1 cut(s) 48
BisI GCNGC 1 cut(s) 738
BlnI CCTAGG 1 cut(s) 50
BlsI GCNGC 1 cut(s) 739
Bme1390I CCNGG 4 cut(s) 92, 579, 713, 752
Bme18I GGWCC 1 cut(s) 351
BmgT120I GGNCC 2 cut(s) 351, 715
BmiI GGNNCC 2 cut(s) 165, 779
BmrFI CCNGG 4 cut(s) 92, 579, 713, 752
BmsI GCATC 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 713
BpmI CTGGAG 2 cut(s) 74, 524
BpuEI CTTGAG 4 cut(s) 179, 428, 545, 730
BpuMI CCSGG 1 cut(s) 752
BsaJI CCNNGG 7 cut(s) 50, 128, 231, 282, 578, 712, 751
BsaWI WCCGGW 1 cut(s) 780
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bsc4I CCNNNNNNNGG 4 cut(s) 51, 134, 502, 620
Bse118I RCCGGY 1 cut(s) 780
BseBI CCWGG 3 cut(s) 92, 579, 713
BseDI CCNNGG 7 cut(s) 50, 128, 231, 282, 578, 712, 751
BseGI GGATG 4 cut(s) 215, 292, 466, 673
BseLI CCNNNNNNNGG 4 cut(s) 51, 134, 502, 620
BseRI GAGGAG 1 cut(s) 556
BseSI GKGCMC 1 cut(s) 323
BseXI GCAGC 1 cut(s) 724
Bsh1236I CGCG 2 cut(s) 730, 762
Bsh1285I CGRYCG 1 cut(s) 180
BshFI GGCC 1 cut(s) 717
BshTI ACCGGT 1 cut(s) 780
BsiEI CGRYCG 1 cut(s) 180
BsiSI CCGG 2 cut(s) 751, 781
BslI CCNNNNNNNGG 4 cut(s) 51, 134, 502, 620
BsmAI GTCTC 1 cut(s) 591
BsmI GAATGC 1 cut(s) 704
BsnI GGCC 1 cut(s) 717
Bsp1286I GDGCHC 2 cut(s) 323, 790
Bsp143I GATC 2 cut(s) 628, 768
BspACI CCGC 4 cut(s) 305, 323, 728, 762
BspANI GGCC 1 cut(s) 717
BspFNI CGCG 2 cut(s) 730, 762
BspLI GGNNCC 2 cut(s) 165, 779
BsrFI RCCGGY 1 cut(s) 780
BssAI RCCGGY 1 cut(s) 780
BssECI CCNNGG 7 cut(s) 50, 128, 231, 282, 578, 712, 751
BssMI GATC 2 cut(s) 628, 768
BssT1I CCWWGG 3 cut(s) 50, 128, 282
Bst2UI CCWGG 3 cut(s) 92, 579, 713
Bst4CI ACNGT 5 cut(s) 242, 355, 562, 644, 656
BstC8I GCNNGC 3 cut(s) 21, 323, 805
BstDEI CTNAG 2 cut(s) 12, 387
BstDSI CCRYGG 1 cut(s) 231
BstENI CCTNNNNNAGG 1 cut(s) 49
BstF5I GGATG 4 cut(s) 215, 292, 466, 673
BstFNI CGCG 2 cut(s) 730, 762
BstKTI GATC 2 cut(s) 631, 771
BstMAI GTCTC 1 cut(s) 591
BstMBI GATC 2 cut(s) 628, 768
BstMCI CGRYCG 1 cut(s) 180
BstMWI GCNNNNNNNGC 1 cut(s) 448
BstNI CCWGG 3 cut(s) 92, 579, 713
BstNSI RCATGY 3 cut(s) 147, 226, 455
BstSCI CCNGG 4 cut(s) 90, 577, 711, 750
BstSFI CTRYAG 1 cut(s) 433
BstSLI GKGCMC 1 cut(s) 323
BstUI CGCG 2 cut(s) 730, 762
BstV1I GCAGC 1 cut(s) 724
BstV2I GAAGAC 1 cut(s) 713
BsuI GTATCC 1 cut(s) 48
BsuRI GGCC 1 cut(s) 717
BtgI CCRYGG 1 cut(s) 231
BtsCI GGATG 4 cut(s) 215, 292, 466, 673
BtsIMutI CAGTG 2 cut(s) 649, 661
Cac8I GCNNGC 3 cut(s) 21, 323, 805
Cfr10I RCCGGY 1 cut(s) 780
Cfr13I GGNCC 2 cut(s) 351, 715
Csp6I GTAC 2 cut(s) 220, 265
CspAI ACCGGT 1 cut(s) 780
CviAII CATG 6 cut(s) 144, 223, 399, 403, 452, 565
CviQI GTAC 2 cut(s) 220, 265
DdeI CTNAG 2 cut(s) 12, 387
DpnI GATC 2 cut(s) 630, 770
DpnII GATC 2 cut(s) 628, 768
Eco130I CCWWGG 3 cut(s) 50, 128, 282
Eco24I GRGCYC 1 cut(s) 790
Eco47I GGWCC 1 cut(s) 351
EcoNI CCTNNNNNAGG 1 cut(s) 49
EcoRI GAATTC 2 cut(s) 382, 756
EcoRII CCWGG 3 cut(s) 90, 577, 711
EcoT14I CCWWGG 3 cut(s) 50, 128, 282
EcoT22I ATGCAT 1 cut(s) 404
EcoT38I GRGCYC 1 cut(s) 790
ErhI CCWWGG 3 cut(s) 50, 128, 282
FaeI CATG 6 cut(s) 147, 226, 402, 406, 455, 568
FalI AAGNNNNNCTT 2 cut(s) 112, 144
FatI CATG 6 cut(s) 143, 222, 398, 402, 451, 564
FauI CCCGC 1 cut(s) 330
FauNDI CATATG 1 cut(s) 277
FbaI TGATCA 2 cut(s) 628, 768
Fnu4HI GCNGC 1 cut(s) 738
FokI GGATG 4 cut(s) 222, 299, 453, 680
FriOI GRGCYC 1 cut(s) 790
Fsp4HI GCNGC 1 cut(s) 738
FspBI CTAG 2 cut(s) 51, 257
GluI GCNGC 1 cut(s) 738
GsuI CTGGAG 2 cut(s) 74, 524
HaeIII GGCC 1 cut(s) 717
HapII CCGG 2 cut(s) 751, 781
Hin1II CATG 6 cut(s) 147, 226, 402, 406, 455, 568
HincII GTYRAC 1 cut(s) 573
HindII GTYRAC 1 cut(s) 573
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 2 cut(s) 55, 659
HpaII CCGG 2 cut(s) 751, 781
HphI GGTGA 1 cut(s) 352
Hpy166II GTNNAC 1 cut(s) 573
Hpy188I TCNGA 4 cut(s) 117, 381, 471, 667
Hpy188III TCNNGA 4 cut(s) 158, 257, 445, 635
Hpy8I GTNNAC 1 cut(s) 573
Hpy99I CGWCG 2 cut(s) 413, 667
HpyAV CCTTC 2 cut(s) 674, 804
HpyCH4III ACNGT 5 cut(s) 242, 355, 562, 644, 656
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 1 cut(s) 402
HpyF10VI GCNNNNNNNGC 1 cut(s) 448
HpyF3I CTNAG 2 cut(s) 12, 387
HpySE526I ACGT 1 cut(s) 370
Hsp92II CATG 6 cut(s) 147, 226, 402, 406, 455, 568
Ksp22I TGATCA 2 cut(s) 628, 768
Kzo9I GATC 2 cut(s) 628, 768
LmnI GCTCC 2 cut(s) 16, 701
Lsp1109I GCAGC 1 cut(s) 724
LweI GCATC 1 cut(s) 200
MaeI CTAG 2 cut(s) 51, 257
MaeII ACGT 1 cut(s) 370
MaeIII GTNAC 3 cut(s) 139, 296, 644
MalI GATC 2 cut(s) 630, 770
MboI GATC 2 cut(s) 628, 768
MboII GAAGA 2 cut(s) 529, 713
MhlI GDGCHC 2 cut(s) 323, 790
MluCI AATT 4 cut(s) 65, 250, 382, 756
MmeI TCCRAC 1 cut(s) 645
MnlI CCTC 8 cut(s) 154, 177, 194, 499, 520, 528, 534, 791
Mph1103I ATGCAT 1 cut(s) 404
MseI TTAA 2 cut(s) 29, 456
MslI CAYNNNNRTG 2 cut(s) 563, 636
MspI CCGG 2 cut(s) 751, 781
MspR9I CCNGG 4 cut(s) 92, 579, 713, 752
Mva1269I GAATGC 1 cut(s) 704
MvaI CCWGG 3 cut(s) 92, 579, 713
MvnI CGCG 2 cut(s) 730, 762
MwoI GCNNNNNNNGC 1 cut(s) 448
NciI CCSGG 1 cut(s) 752
NdeI CATATG 1 cut(s) 277
NdeII GATC 2 cut(s) 628, 768
NlaIII CATG 6 cut(s) 147, 226, 402, 406, 455, 568
NlaIV GGNNCC 2 cut(s) 165, 779
NmuCI GTSAC 3 cut(s) 139, 296, 644
NsiI ATGCAT 1 cut(s) 404
NspI RCATGY 3 cut(s) 147, 226, 455
PciI ACATGT 1 cut(s) 222
PctI GAATGC 1 cut(s) 704
PfeI GAWTC 2 cut(s) 55, 659
PflMI CCANNNNNTGG 1 cut(s) 620
PfoI TCCNGGA 1 cut(s) 90
PinAI ACCGGT 1 cut(s) 780
PkrI GCNGC 1 cut(s) 739
PscI ACATGT 1 cut(s) 222
Psp6I CCWGG 3 cut(s) 90, 577, 711
PspGI CCWGG 3 cut(s) 90, 577, 711
PspN4I GGNNCC 2 cut(s) 165, 779
PspPI GGNCC 2 cut(s) 351, 715
RsaI GTAC 2 cut(s) 221, 266
RsaNI GTAC 2 cut(s) 220, 265
RseI CAYNNNNRTG 2 cut(s) 563, 636
SaqAI TTAA 2 cut(s) 29, 456
SatI GCNGC 1 cut(s) 738
Sau3AI GATC 2 cut(s) 628, 768
Sau96I GGNCC 2 cut(s) 351, 715
ScrFI CCNGG 4 cut(s) 92, 579, 713, 752
SduI GDGCHC 2 cut(s) 323, 790
SfaNI GCATC 1 cut(s) 200
SfcI CTRYAG 1 cut(s) 433
SinI GGWCC 1 cut(s) 351
SmiMI CAYNNNNRTG 2 cut(s) 563, 636
SmlI CTYRAG 4 cut(s) 158, 443, 524, 745
SmoI CTYRAG 4 cut(s) 158, 443, 524, 745
Sse9I AATT 4 cut(s) 65, 250, 382, 756
SsiI CCGC 4 cut(s) 305, 323, 728, 762
SspMI CTAG 2 cut(s) 51, 257
StyD4I CCNGG 4 cut(s) 90, 577, 711, 750
StyI CCWWGG 3 cut(s) 50, 128, 282
TaaI ACNGT 5 cut(s) 242, 355, 562, 644, 656
TaiI ACGT 1 cut(s) 373
TaqI TCGA 3 cut(s) 693, 708, 790
TaqII GACCGA 1 cut(s) 166
TasI AATT 4 cut(s) 65, 250, 382, 756
TatI WGTACW 1 cut(s) 264
TfiI GAWTC 2 cut(s) 55, 659
Tru1I TTAA 2 cut(s) 29, 456
Tru9I TTAA 2 cut(s) 29, 456
TscAI CASTG 2 cut(s) 649, 661
TseFI GTSAC 3 cut(s) 139, 296, 644
TseI GCWGC 1 cut(s) 737
Tsp45I GTSAC 3 cut(s) 139, 296, 644
TspDTI ATGAA 2 cut(s) 183, 419
TspGWI ACGGA 1 cut(s) 207
TspRI CASTG 2 cut(s) 649, 661
Van91I CCANNNNNTGG 1 cut(s) 620
VpaK11BI GGWCC 1 cut(s) 351
XagI CCTNNNNNAGG 1 cut(s) 49
XapI RAATTY 3 cut(s) 65, 382, 756
XbaI TCTAGA 1 cut(s) 256
XceI RCATGY 3 cut(s) 147, 226, 455
XmaJI CCTAGG 1 cut(s) 50
XspI CTAG 2 cut(s) 51, 257
Zsp2I ATGCAT 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.