Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000392.1

Orthogroup ID

OG0006060

Physical Location & Seq

Genomic Coordinates Reverse (-)

20829 .. 21797

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000392.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atggccaaagttaacaagttacgccgcaaatctgactcccagtctttgaggagaacctcatatgctctaaaggctcttaaaaatgtccgtgcaaaaaagaaatctgcccaagcatcgaagaagaaagattgggaagatgtgacctgttcagtgtgtatggagtctcctcacaatgcagttctcctcctttgttcctcttatgataagggttgccgcccttatatgtgtgctactggccatcgctattccaactgtcttgaacaataccaaaaagcatacacaaaagtttcttctattcagaattctcaagaatgggatagatcagttggaaacttgggtgttaattcaagtgaaggggagcccatagagaagggggagaaaccggagcttttatgcccactttgtcgggggcaggttaagggttgcacagtggtggaacgggcaaggaaacatcttaatgccaagaagagaacttgcctgcaggataagtgctcattctccggaacttacagagaactcaagaaacatgttaagtcaaagcacccattggcacggccccgggcagtagatcctgtactggaagaaaaatggaagaagcttgagcgtgaaagagagaggaatgatgtaatcagcaccataatgtcatctacaccaggggcagtggtccttggggattatgtgttggagcctaaccatgatggcatgtacagtgattctgattccgaactagatgactacatcgatgatttgggatttgggccatttgttggtctaaatggtggtcttttttcacagcggaggtttcaaagggactatgactcattagatgatgatgatttttcacgtgcagcaggttctaattcttctgttgcacctcgacgcagtttctcaagaaacagagtaatatttggtaggccgaggcggcggcgtagaaatagagaagaacgtgcacctggacgatttgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1644

Protein Analysis

322

Amino Acids

36.7

Weight (kDa)

9.6

Isoelectric Point (pI)

57.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006060)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77770 AT1G77770 AT1G77770 AT4G08460 AT4G08460 AT4G08460 AT4G08460
fragaria_vesca	FvH4_5g38990 FvH4_5g38990
malus_domestica	MD08G1172600.v1.1 MD15G1358200.v1.1
prunus_persica	Prupe.1G505600_v2.0.a1 Prupe.1G505600_v2.0.a1
pyrus_communis	pycom08g14740 pycom15g32050
rosa_chinensis	RchiOBHm_Chr7g0240961
rosa_laevigata	RLG00000000611
rosa_multiflora	Rmu_ssc0000392.1_g000009
rosa_roxburghii	Rroxscaffold_3G00219380
rosa_rugosa	Rorug07G0340600 Rorug07G0340700 Rorug07G0340800
rosa_samantha	Rh7AG495600 Rh7BG467000 Rh7CG513100 Rh7DG480200
rosa_wichuraiana	Rw7G041880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	403, 842
AccB7I	CCANNNNNTGG	1 cut(s)	767
AccIII	TCCGGA	1 cut(s)	500
AciI	CCGC	5 cut(s)	25, 214, 796, 922, 925
AclWI	GGATC	1 cut(s)	563
AcoI	YGGCCR	2 cut(s)	3, 235
AcsI	RAATTY	1 cut(s)	301
AcvI	CACGTG	1 cut(s)	845
AfaI	GTAC	2 cut(s)	576, 707
AfiI	CCNNNNNNNGG	1 cut(s)	767
AflIII	ACRYGT	1 cut(s)	526
AgsI	TTSAA	3 cut(s)	260, 348, 806
AhdI	GACNNNNNGTC	1 cut(s)	40
AjnI	CCWGG	2 cut(s)	652, 952
AleI	CACNNNNGTG	1 cut(s)	431
AluBI	AGCT	2 cut(s)	388, 598
AluI	AGCT	2 cut(s)	388, 598
Alw21I	GWGCWC	2 cut(s)	494, 952
Alw26I	GTCTC	1 cut(s)	168
Alw44I	GTGCAC	1 cut(s)	948
AlwI	GGATC	1 cut(s)	563
Ama87I	CYCGRG	1 cut(s)	558
Aor13HI	TCCGGA	1 cut(s)	500
AoxI	GGCC	5 cut(s)	3, 235, 554, 758, 914
ApaLI	GTGCAC	1 cut(s)	948
ApeKI	GCWGC	1 cut(s)	848
ApoI	RAATTY	1 cut(s)	301
AspS9I	GGNCC	3 cut(s)	555, 664, 758
AsuC2I	CCSGG	2 cut(s)	559, 560
AvaI	CYCGRG	1 cut(s)	558
AvaII	GGWCC	1 cut(s)	664
BaeGI	GKGCMC	1 cut(s)	952
BalI	TGGCCA	2 cut(s)	5, 237
BanII	GRGCYC	1 cut(s)	363
BbrPI	CACGTG	1 cut(s)	845
Bbv12I	GWGCWC	2 cut(s)	494, 952
BbvI	GCAGC	1 cut(s)	860
BccI	CCATC	2 cut(s)	246, 692
BceAI	ACGGC	1 cut(s)	569
BciT130I	CCWGG	2 cut(s)	654, 954
BcnI	CCSGG	2 cut(s)	559, 560
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	728
BfmI	CTRYAG	1 cut(s)	479
BfuAI	ACCTGC	2 cut(s)	403, 842
BglI	GCCNNNNNGGC	1 cut(s)	922
BisI	GCNGC	5 cut(s)	25, 214, 849, 923, 926
BlsI	GCNGC	5 cut(s)	26, 215, 850, 924, 927
Bme1390I	CCNGG	4 cut(s)	559, 560, 654, 954
Bme18I	GGWCC	1 cut(s)	664
BmeRI	GACNNNNNGTC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	558
BmgT120I	GGNCC	3 cut(s)	555, 664, 758
BmiI	GGNNCC	3 cut(s)	360, 557, 687
BmrFI	CCNGG	4 cut(s)	559, 560, 654, 954
BmrI	ACTGGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	122
BmuI	ACTGGG	1 cut(s)	34
BpuEI	CTTGAG	4 cut(s)	291, 503, 620, 874
BpuMI	CCSGG	2 cut(s)	559, 560
Bsa29I	ATCGAT	1 cut(s)	741
BsaAI	YACGTR	1 cut(s)	845
BsaJI	CCNNGG	5 cut(s)	557, 558, 653, 667, 917
BsaWI	WCCGGW	2 cut(s)	382, 500
Bsc4I	CCNNNNNNNGG	1 cut(s)	767
Bse1I	ACTGG	3 cut(s)	40, 238, 582
BseAI	TCCGGA	1 cut(s)	500
BseBI	CCWGG	2 cut(s)	654, 954
BseCI	ATCGAT	1 cut(s)	741
BseDI	CCNNGG	5 cut(s)	557, 558, 653, 667, 917
BseLI	CCNNNNNNNGG	1 cut(s)	767
BseNI	ACTGG	3 cut(s)	40, 238, 582
BseRI	GAGGAG	3 cut(s)	64, 156, 173
BseSI	GKGCMC	1 cut(s)	952
BseXI	GCAGC	1 cut(s)	860
BsgI	GTGCAG	1 cut(s)	867
BshFI	GGCC	5 cut(s)	5, 237, 556, 760, 916
BshVI	ATCGAT	1 cut(s)	741
BsiHKAI	GWGCWC	2 cut(s)	494, 952
BsiHKCI	CYCGRG	1 cut(s)	558
BsiSI	CCGG	3 cut(s)	383, 501, 559
BslFI	GGGAC	1 cut(s)	824
BslI	CCNNNNNNNGG	1 cut(s)	767
BsmAI	GTCTC	1 cut(s)	168
BsmFI	GGGAC	1 cut(s)	824
BsnI	GGCC	5 cut(s)	5, 237, 556, 760, 916
BsoBI	CYCGRG	1 cut(s)	558
Bsp1286I	GDGCHC	3 cut(s)	363, 494, 952
Bsp13I	TCCGGA	1 cut(s)	500
Bsp1407I	TGTACA	1 cut(s)	705
Bsp143I	GATC	2 cut(s)	320, 568
BspACI	CCGC	5 cut(s)	25, 214, 796, 922, 925
BspANI	GGCC	5 cut(s)	5, 237, 556, 760, 916
BspDI	ATCGAT	1 cut(s)	741
BspEI	TCCGGA	1 cut(s)	500
BspLI	GGNNCC	3 cut(s)	360, 557, 687
BspMAI	CTGCAG	1 cut(s)	483
BspMI	ACCTGC	2 cut(s)	403, 842
BspPI	GGATC	1 cut(s)	563
BsrGI	TGTACA	1 cut(s)	705
BsrI	ACTGG	3 cut(s)	40, 238, 582
BssECI	CCNNGG	5 cut(s)	557, 558, 653, 667, 917
BssMI	GATC	2 cut(s)	320, 568
BssT1I	CCWWGG	1 cut(s)	667
Bst2UI	CCWGG	2 cut(s)	654, 954
Bst4CI	ACNGT	3 cut(s)	254, 430, 710
Bst6I	CTCTTC	1 cut(s)	461
BstAUI	TGTACA	1 cut(s)	705
BstBAI	YACGTR	1 cut(s)	845
BstC8I	GCNNGC	1 cut(s)	479
BstKTI	GATC	2 cut(s)	323, 571
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	2 cut(s)	320, 568
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 922
BstNI	CCWGG	2 cut(s)	654, 954
BstNSI	RCATGY	2 cut(s)	530, 706
BstSCI	CCNGG	4 cut(s)	557, 558, 652, 952
BstSFI	CTRYAG	1 cut(s)	479
BstSLI	GKGCMC	1 cut(s)	952
BstV1I	GCAGC	1 cut(s)	860
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
Bsu15I	ATCGAT	1 cut(s)	741
BsuRI	GGCC	5 cut(s)	5, 237, 556, 760, 916
BsuTUI	ATCGAT	1 cut(s)	741
BtgZI	GCGATG	1 cut(s)	224
BtsI	GCAGTG	1 cut(s)	666
BtsIMutI	CAGTG	4 cut(s)	156, 435, 666, 715
BveI	ACCTGC	2 cut(s)	403, 842
Cac8I	GCNNGC	1 cut(s)	479
Cfr13I	GGNCC	3 cut(s)	555, 664, 758
Cfr9I	CCCGGG	1 cut(s)	558
ClaI	ATCGAT	1 cut(s)	741
CseI	GACGC	1 cut(s)	888
Csp6I	GTAC	2 cut(s)	575, 706
CviAII	CATG	3 cut(s)	527, 695, 703
CviQI	GTAC	2 cut(s)	575, 706
DpnI	GATC	2 cut(s)	322, 570
DpnII	GATC	2 cut(s)	320, 568
DriI	GACNNNNNGTC	1 cut(s)	40
EaeI	YGGCCR	2 cut(s)	3, 235
Eam1104I	CTCTTC	1 cut(s)	461
Eam1105I	GACNNNNNGTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	461
Eco130I	CCWWGG	1 cut(s)	667
Eco24I	GRGCYC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	664
Eco72I	CACGTG	1 cut(s)	845
Eco88I	CYCGRG	1 cut(s)	558
EcoRI	GAATTC	1 cut(s)	301
EcoRII	CCWGG	2 cut(s)	652, 952
EcoT14I	CCWWGG	1 cut(s)	667
EcoT38I	GRGCYC	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	667
FaeI	CATG	3 cut(s)	530, 698, 706
FaqI	GGGAC	1 cut(s)	824
FatI	CATG	3 cut(s)	526, 694, 702
FauNDI	CATATG	1 cut(s)	61
Fnu4HI	GCNGC	5 cut(s)	25, 214, 849, 923, 926
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	5 cut(s)	25, 214, 849, 923, 926
FspBI	CTAG	1 cut(s)	728
GluI	GCNGC	5 cut(s)	25, 214, 849, 923, 926
HaeIII	GGCC	5 cut(s)	5, 237, 556, 760, 916
HapII	CCGG	3 cut(s)	383, 501, 559
HgaI	GACGC	1 cut(s)	888
Hin1II	CATG	3 cut(s)	530, 698, 706
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	5 cut(s)	35, 161, 713, 719, 818
HpaI	GTTAAC	1 cut(s)	13
HpaII	CCGG	3 cut(s)	383, 501, 559
Hpy166II	GTNNAC	2 cut(s)	13, 950
Hpy188I	TCNGA	4 cut(s)	34, 300, 718, 724
Hpy188III	TCNNGA	5 cut(s)	257, 308, 501, 520, 891
Hpy8I	GTNNAC	2 cut(s)	13, 950
Hpy99I	CGWCG	1 cut(s)	882
HpyAV	CCTTC	2 cut(s)	347, 364
HpyCH4III	ACNGT	3 cut(s)	254, 430, 710
HpyCH4IV	ACGT	2 cut(s)	844, 946
HpyCH4V	TGCA	7 cut(s)	92, 176, 426, 481, 848, 872, 950
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 922
HpySE526I	ACGT	2 cut(s)	844, 946
Hsp92II	CATG	3 cut(s)	530, 698, 706
Kpn2I	TCCGGA	1 cut(s)	500
KspAI	GTTAAC	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	320, 568
LmnI	GCTCC	3 cut(s)	358, 385, 685
Lsp1109I	GCAGC	1 cut(s)	860
LweI	GCATC	1 cut(s)	122
MaeI	CTAG	1 cut(s)	728
MaeII	ACGT	2 cut(s)	844, 946
MaeIII	GTNAC	2 cut(s)	18, 139
MalI	GATC	2 cut(s)	322, 570
MboI	GATC	2 cut(s)	320, 568
MboII	GAAGA	9 cut(s)	130, 133, 146, 282, 478, 593, 604, 855, 953
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	3 cut(s)	363, 494, 952
MlsI	TGGCCA	2 cut(s)	5, 237
MluCI	AATT	3 cut(s)	301, 343, 859
MluNI	TGGCCA	2 cut(s)	5, 237
MlyI	GAGTC	3 cut(s)	29, 170, 812
MmeI	TCCRAC	3 cut(s)	273, 307, 663
MnlI	CCTC	9 cut(s)	42, 67, 177, 194, 205, 609, 792, 885, 912
Mox20I	TGGCCA	2 cut(s)	5, 237
MroI	TCCGGA	1 cut(s)	500
MscI	TGGCCA	2 cut(s)	5, 237
MseI	TTAA	6 cut(s)	12, 78, 342, 417, 456, 531
MslI	CAYNNNNRTG	3 cut(s)	431, 456, 638
Msp20I	TGGCCA	2 cut(s)	5, 237
MspA1I	CMGCKG	1 cut(s)	796
MspI	CCGG	3 cut(s)	383, 501, 559
MspR9I	CCNGG	4 cut(s)	559, 560, 654, 954
MvaI	CCWGG	2 cut(s)	654, 954
MwoI	GCNNNNNNNGC	2 cut(s)	71, 922
NciI	CCSGG	2 cut(s)	559, 560
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	2 cut(s)	320, 568
NlaIII	CATG	3 cut(s)	530, 698, 706
NlaIV	GGNNCC	3 cut(s)	360, 557, 687
NmeAIII	GCCGAG	1 cut(s)	942
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	2 cut(s)	530, 706
OliI	CACNNNNGTG	1 cut(s)	431
PciI	ACATGT	1 cut(s)	526
PfeI	GAWTC	2 cut(s)	713, 719
PflMI	CCANNNNNTGG	1 cut(s)	767
PkrI	GCNGC	5 cut(s)	26, 215, 850, 924, 927
PleI	GAGTC	3 cut(s)	29, 169, 812
PmaCI	CACGTG	1 cut(s)	845
PmlI	CACGTG	1 cut(s)	845
PpsI	GAGTC	3 cut(s)	29, 169, 812
Ppu21I	YACGTR	1 cut(s)	845
PscI	ACATGT	1 cut(s)	526
Psp6I	CCWGG	2 cut(s)	652, 952
PspCI	CACGTG	1 cut(s)	845
PspGI	CCWGG	2 cut(s)	652, 952
PspN4I	GGNNCC	3 cut(s)	360, 557, 687
PspPI	GGNCC	3 cut(s)	555, 664, 758
PstI	CTGCAG	1 cut(s)	483
PsuI	RGATCY	1 cut(s)	568
RsaI	GTAC	2 cut(s)	576, 707
RsaNI	GTAC	2 cut(s)	575, 706
RseI	CAYNNNNRTG	3 cut(s)	431, 456, 638
SaqAI	TTAA	6 cut(s)	12, 78, 342, 417, 456, 531
SatI	GCNGC	5 cut(s)	25, 214, 849, 923, 926
Sau3AI	GATC	2 cut(s)	320, 568
Sau96I	GGNCC	3 cut(s)	555, 664, 758
SbfI	CCTGCAGG	1 cut(s)	483
SchI	GAGTC	3 cut(s)	29, 170, 812
ScrFI	CCNGG	4 cut(s)	559, 560, 654, 954
SdaI	CCTGCAGG	1 cut(s)	483
SduI	GDGCHC	3 cut(s)	363, 494, 952
SfaNI	GCATC	1 cut(s)	122
SfcI	CTRYAG	1 cut(s)	479
SinI	GGWCC	1 cut(s)	664
SmaI	CCCGGG	1 cut(s)	560
SmiMI	CAYNNNNRTG	3 cut(s)	431, 456, 638
SmlI	CTYRAG	4 cut(s)	306, 518, 599, 889
SmoI	CTYRAG	4 cut(s)	306, 518, 599, 889
Sse8387I	CCTGCAGG	1 cut(s)	483
Sse9I	AATT	3 cut(s)	301, 343, 859
SsiI	CCGC	5 cut(s)	25, 214, 796, 922, 925
SspI	AATATT	1 cut(s)	906
SspMI	CTAG	1 cut(s)	728
StyD4I	CCNGG	4 cut(s)	557, 558, 652, 952
StyI	CCWWGG	1 cut(s)	667
TaaI	ACNGT	3 cut(s)	254, 430, 710
TaiI	ACGT	2 cut(s)	847, 949
TaqI	TCGA	3 cut(s)	116, 741, 877
TasI	AATT	3 cut(s)	301, 343, 859
TatI	WGTACW	2 cut(s)	574, 705
TauI	GCSGC	4 cut(s)	27, 216, 925, 928
TfiI	GAWTC	2 cut(s)	713, 719
Tru1I	TTAA	6 cut(s)	12, 78, 342, 417, 456, 531
Tru9I	TTAA	6 cut(s)	12, 78, 342, 417, 456, 531
TscAI	CASTG	4 cut(s)	156, 435, 666, 715
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	848
Tsp45I	GTSAC	1 cut(s)	139
TspGWI	ACGGA	1 cut(s)	77
TspMI	CCCGGG	1 cut(s)	558
TspRI	CASTG	4 cut(s)	156, 435, 666, 715
Van91I	CCANNNNNTGG	1 cut(s)	767
VneI	GTGCAC	1 cut(s)	948
VpaK11BI	GGWCC	1 cut(s)	664
XapI	RAATTY	1 cut(s)	301
XceI	RCATGY	2 cut(s)	530, 706
XmaI	CCCGGG	1 cut(s)	558
XspI	CTAG	1 cut(s)	728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.