Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006060

Physical Location & Seq

Genomic Coordinates Reverse (-)

37544127 .. 37544792

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0340600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGAAGAATGCTATGTACTGAAGGACATTTTTGAGCTATATGAAAAAGCCTCTGGCCAACTTATCAATTATCAGAAGAGTAGTGTATCTTTTAGCAAGAATGTGCGAAGGGACAAGCAAGAGGCTCTTGCTGCAGTTTTGGAGGTGCTTCGTGTTGATAAGCATGATAAATATTTGGGTTTACCCACTGAGTTAAGTTATTCCAAGATTGAGGCATTTAGCTTCTTTACTGAACGGGTCAGGAAGAGAACTCAAGGTTGGAGGGAAAAAACTTTGAGTGATGCTGGTAAAGAAGTTATGTTGAAGGCGGTGGTCCAATCCATTCCGACCTATGTAATGAGCTGTTTTGAACTCCCTAAACACCTTTGTTCTGAGATGCACCGACTGATGGCGAGATTTTGGTGGGGAGACAAGGTTGATGAGAAAAAAATCCATTGGCTAGCTTGGGAGAGATTGTGCGTTCCCAAATCGGAGGGTGGTCTTGGGTTTCGAAACATGGTTCATTTCAATCAAGCATTGCTAGCTAAGCAAGGTTGGAGGATCCTACAATCGCCGGAGTCTTTGATAGCTAGGTTGTATAAAGCCCGTTATTTCCCGCGGTGTGGCTTTCTTGAGGCTGAAGTTACTAAGGGGGCTTCTTATGCATGGCAAAGCTCTGCTACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1644

Protein Analysis

221

Amino Acids

25.75

Weight (kDa)

9.29

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006060)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77770 AT1G77770 AT1G77770 AT4G08460 AT4G08460 AT4G08460 AT4G08460
fragaria_vesca	FvH4_5g38990 FvH4_5g38990
malus_domestica	MD08G1172600.v1.1 MD15G1358200.v1.1
prunus_persica	Prupe.1G505600_v2.0.a1 Prupe.1G505600_v2.0.a1
pyrus_communis	pycom08g14740 pycom15g32050
rosa_chinensis	RchiOBHm_Chr7g0240961
rosa_laevigata	RLG00000000611
rosa_multiflora	Rmu_ssc0000392.1_g000009
rosa_roxburghii	Rroxscaffold_3G00219380
rosa_rugosa	Rorug07G0340600 Rorug07G0340700 Rorug07G0340800
rosa_samantha	Rh7AG495600 Rh7BG467000 Rh7CG513100 Rh7DG480200
rosa_wichuraiana	Rw7G041880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	598
AciI	CCGC	3 cut(s)	308, 596, 598
AclWI	GGATC	2 cut(s)	535, 548
AcoI	YGGCCR	1 cut(s)	55
AcuI	CTGAAG	2 cut(s)	41, 639
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	2 cut(s)	388, 602
AgsI	TTSAA	3 cut(s)	304, 350, 508
AjuI	GAANNNNNNNTTGG	2 cut(s)	241, 273
AluBI	AGCT	7 cut(s)	37, 222, 342, 443, 524, 569, 654
AluI	AGCT	7 cut(s)	37, 222, 342, 443, 524, 569, 654
Alw26I	GTCTC	1 cut(s)	402
AlwI	GGATC	2 cut(s)	535, 548
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	313
AsuII	TTCGAA	1 cut(s)	490
AsuNHI	GCTAGC	2 cut(s)	439, 520
AvaII	GGWCC	1 cut(s)	313
BalI	TGGCCA	1 cut(s)	57
BamHI	GGATCC	1 cut(s)	540
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	1 cut(s)	382
BcoDI	GTCTC	1 cut(s)	402
BfaI	CTAG	3 cut(s)	440, 521, 570
BfmI	CTRYAG	1 cut(s)	132
BisI	GCNGC	1 cut(s)	132
BlpI	GCTNAGC	1 cut(s)	525
BlsI	GCNGC	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	542
BmsI	GCATC	2 cut(s)	271, 366
BmtI	GCTAGC	2 cut(s)	443, 524
Bpu1102I	GCTNAGC	1 cut(s)	525
Bpu14I	TTCGAA	1 cut(s)	490
BpuEI	CTTGAG	2 cut(s)	237, 632
BsaAI	YACGTR	1 cut(s)	663
BsaJI	CCNNGG	1 cut(s)	596
BsaXI	ACNNNNNCTCC	4 cut(s)	399, 429, 440, 470
Bsc4I	CCNNNNNNNGG	2 cut(s)	388, 602
Bse3DI	GCAATG	1 cut(s)	515
BseDI	CCNNGG	1 cut(s)	596
BseLI	CCNNNNNNNGG	2 cut(s)	388, 602
BseMI	GCAATG	1 cut(s)	515
BseMII	CTCAG	2 cut(s)	180, 363
BseXI	GCAGC	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	598
BshFI	GGCC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	554
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	2 cut(s)	388, 602
BsmAI	GTCTC	1 cut(s)	402
BsmFI	GGGAC	1 cut(s)	125
BsmI	GAATGC	1 cut(s)	14
BsnI	GGCC	1 cut(s)	57
Bsp119I	TTCGAA	1 cut(s)	490
Bsp143I	GATC	1 cut(s)	540
Bsp1720I	GCTNAGC	1 cut(s)	525
BspACI	CCGC	3 cut(s)	308, 596, 598
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	2 cut(s)	181, 364
BspFNI	CGCG	1 cut(s)	598
BspLI	GGNNCC	1 cut(s)	542
BspMAI	CTGCAG	1 cut(s)	136
BspOI	GCTAGC	2 cut(s)	443, 524
BspPI	GGATC	2 cut(s)	535, 548
BspT104I	TTCGAA	1 cut(s)	490
BsrDI	GCAATG	1 cut(s)	515
BssECI	CCNNGG	1 cut(s)	596
BssMI	GATC	1 cut(s)	540
Bst6I	CTCTTC	2 cut(s)	71, 239
BstBAI	YACGTR	1 cut(s)	663
BstBI	TTCGAA	1 cut(s)	490
BstC8I	GCNNGC	2 cut(s)	441, 522
BstDEI	CTNAG	4 cut(s)	189, 372, 525, 627
BstDSI	CCRYGG	1 cut(s)	596
BstFNI	CGCG	1 cut(s)	598
BstKTI	GATC	1 cut(s)	543
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	1 cut(s)	540
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 521, 526, 641
BstSFI	CTRYAG	1 cut(s)	132
BstSNI	TACGTA	1 cut(s)	663
BstUI	CGCG	1 cut(s)	598
BstV1I	GCAGC	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	540
BstYI	RGATCY	1 cut(s)	540
BsuRI	GGCC	1 cut(s)	57
BtgI	CCRYGG	1 cut(s)	596
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	2 cut(s)	441, 522
Cfr13I	GGNCC	1 cut(s)	313
Cfr42I	CCGCGG	1 cut(s)	599
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	3 cut(s)	164, 496, 645
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	4 cut(s)	189, 372, 525, 627
DpnI	GATC	1 cut(s)	542
DpnII	GATC	1 cut(s)	540
EaeI	YGGCCR	1 cut(s)	55
Eam1104I	CTCTTC	2 cut(s)	71, 239
EarI	CTCTTC	2 cut(s)	71, 239
Eco105I	TACGTA	1 cut(s)	663
Eco47I	GGWCC	1 cut(s)	313
Eco57I	CTGAAG	2 cut(s)	41, 639
EcoT22I	ATGCAT	1 cut(s)	646
FaeI	CATG	3 cut(s)	167, 499, 648
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	3 cut(s)	163, 495, 644
FauI	CCCGC	1 cut(s)	603
Fnu4HI	GCNGC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	3 cut(s)	440, 521, 570
GluI	GCNGC	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	1 cut(s)	554
Hin1II	CATG	3 cut(s)	167, 499, 648
HinfI	GANTC	1 cut(s)	557
HpaII	CCGG	1 cut(s)	554
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	4 cut(s)	75, 327, 373, 472
Hpy188III	TCNNGA	2 cut(s)	241, 611
Hpy8I	GTNNAC	1 cut(s)	182
HpyAV	CCTTC	3 cut(s)	16, 102, 298
HpyCH4IV	ACGT	1 cut(s)	662
HpyCH4V	TGCA	3 cut(s)	134, 379, 644
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 521, 526, 641
HpyF3I	CTNAG	4 cut(s)	189, 372, 525, 627
HpySE526I	ACGT	1 cut(s)	662
Hsp92II	CATG	3 cut(s)	167, 499, 648
KspI	CCGCGG	1 cut(s)	599
Kzo9I	GATC	1 cut(s)	540
LpnPI	CCDG	4 cut(s)	39, 226, 270, 567
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	2 cut(s)	271, 366
MaeI	CTAG	3 cut(s)	440, 521, 570
MaeII	ACGT	1 cut(s)	662
MaeIII	GTNAC	1 cut(s)	622
MalI	GATC	1 cut(s)	542
MboI	GATC	1 cut(s)	540
MboII	GAAGA	3 cut(s)	17, 88, 256
MflI	RGATCY	1 cut(s)	540
MlsI	TGGCCA	1 cut(s)	57
MluCI	AATT	1 cut(s)	67
MluNI	TGGCCA	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	3 cut(s)	239, 350, 515
MnlI	CCTC	8 cut(s)	61, 115, 136, 205, 255, 466, 531, 607
Mox20I	TGGCCA	1 cut(s)	57
Mph1103I	ATGCAT	1 cut(s)	646
MscI	TGGCCA	1 cut(s)	57
MseI	TTAA	1 cut(s)	194
Msp20I	TGGCCA	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	598
MspI	CCGG	1 cut(s)	554
Mva1269I	GAATGC	1 cut(s)	14
MvnI	CGCG	1 cut(s)	598
MwoI	GCNNNNNNNGC	4 cut(s)	131, 521, 526, 641
NdeII	GATC	1 cut(s)	540
NheI	GCTAGC	2 cut(s)	439, 520
NlaIII	CATG	3 cut(s)	167, 499, 648
NlaIV	GGNNCC	1 cut(s)	542
NsiI	ATGCAT	1 cut(s)	646
NspV	TTCGAA	1 cut(s)	490
PctI	GAATGC	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
Ppu21I	YACGTR	1 cut(s)	663
PspN4I	GGNNCC	1 cut(s)	542
PspPI	GGNCC	1 cut(s)	313
PstI	CTGCAG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	540
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
SacII	CCGCGG	1 cut(s)	599
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	1 cut(s)	540
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	1 cut(s)	566
SfaNI	GCATC	2 cut(s)	271, 366
SfcI	CTRYAG	1 cut(s)	132
Sfr303I	CCGCGG	1 cut(s)	599
SfuI	TTCGAA	1 cut(s)	490
SgrBI	CCGCGG	1 cut(s)	599
SinI	GGWCC	1 cut(s)	313
SmlI	CTYRAG	2 cut(s)	252, 611
SmoI	CTYRAG	2 cut(s)	252, 611
SnaBI	TACGTA	1 cut(s)	663
Sse9I	AATT	1 cut(s)	67
SsiI	CCGC	3 cut(s)	308, 596, 598
SspI	AATATT	1 cut(s)	173
SspMI	CTAG	3 cut(s)	440, 521, 570
TaiI	ACGT	1 cut(s)	665
TaqI	TCGA	1 cut(s)	490
TasI	AATT	1 cut(s)	67
TatI	WGTACW	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	1 cut(s)	131
TspDTI	ATGAA	2 cut(s)	57, 491
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	313
XspI	CTAG	3 cut(s)	440, 521, 570
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.