Rh7BG467000

Protein of unknown function (DUF1644)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0006060
Physical Location & Seq
Forward (+)
55240133 .. 55243694
3562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG467000.1

Sequence Viewer

Length: 1044 bp
ATGATTTACTGTTGTTATGAAAAACTTGAGAATAATCTTCACCTTCTTTTGTCAAGTTTCAGGTTCTGTTTGTACATGGCCAAAGTTAACAAGTTACGCCGCAAATCTGACTCCCAGTCTTTGAGGAGAACCTCATATGCTCTAAAGGCTCTTAAAAATGTCCGTGCAAAAAAGAAATCTGCCAAAGCATCAAAGAAGAAAGATTGGGAAGATGTGACCTGTTCAGTGTGTATGGAGTCTCCTCACAATGCAGTTCTCCTCCTTTGTTCCTCTTATGATAAGGGTTGCCGCCCTTATATGTGTGCTACTGGCCATCGCTATTCCAACTGTCTTGAACAATACCAAAAAGCATACACAAAAGTTTCTTCTATTCAGAATTCTCAAGAATGGGATAGATCAGTTGGAAACTTAGGTGTTAATTCGAGTGAAGGGGAGCCCATAGAGAAGGGGGAGAAACCGGAGCTTTTATGCCCACTTTGTCGGGGGCAGGTTAAGGGTTGCACAGTGGTGGAACGGGCAAGGAAACATCTTAATGCCAAGAAGAGAACTTGCCTGCAGGATAAGTGCTCATTCTCCGGAACTTACAGAGAACTCAAGAAACATGTTAAGTCAAAGCACCCATTGGCACGGCCCCGGGCAGTGGATCCTGTACTGGAAGAAAAATGGAAGAAGCTTGAGCGTGAAAGAGAGAGGAATGATGTAATCAGCACCATAATGTCATCTACACCCGGGGCAGTGGTCCTTGGGGATTATGTGTTGGAGCCTAACCATGATGGCATGTACAGTGATTCCGATTCTGAACTAGATGACTACATCGATGATTTGGGATTTGGGCCATTTGTTGGTCTAAATGGTGGTCTTTTTTCACAGCGGAGGTTTCAAAGGGACTATGACTCATTAGATGATGATGATTTTTCACGTGCTGCAGGTTCTAATTCTTCTGTTGCACCTCGACGCACTTTCTCAAGAAACAGAGTAATATTTGGTAGGCCGAGGCGGCGGCGTAGAAATAGAGAAGAACGTGCACCTGGACGATTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1644

Protein Analysis

347

Amino Acids

39.81

Weight (kDa)

9.49

Isoelectric Point (pI)

54.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1644 PF07800 70 - 236 4.9e-68 Protein of unknown function (DUF1644)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 478, 917
AccB7I CCANNNNNTGG 1 cut(s) 842
AccIII TCCGGA 1 cut(s) 575
AciI CCGC 5 cut(s) 100, 289, 871, 997, 1000
AclWI GGATC 2 cut(s) 638, 651
AcoI YGGCCR 2 cut(s) 78, 310
AcsI RAATTY 1 cut(s) 376
AcvI CACGTG 1 cut(s) 920
AfaI GTAC 3 cut(s) 74, 651, 782
AfiI CCNNNNNNNGG 2 cut(s) 640, 842
AflIII ACRYGT 1 cut(s) 601
AgsI TTSAA 2 cut(s) 335, 881
AhdI GACNNNNNGTC 1 cut(s) 115
AjnI CCWGG 1 cut(s) 1027
AleI CACNNNNGTG 1 cut(s) 506
AluBI AGCT 2 cut(s) 463, 673
AluI AGCT 2 cut(s) 463, 673
Alw21I GWGCWC 2 cut(s) 569, 1027
Alw26I GTCTC 1 cut(s) 243
Alw44I GTGCAC 1 cut(s) 1023
AlwI GGATC 2 cut(s) 638, 651
AlwNI CAGNNNCTG 1 cut(s) 66
Ama87I CYCGRG 2 cut(s) 633, 728
Aor13HI TCCGGA 1 cut(s) 575
AoxI GGCC 5 cut(s) 78, 310, 629, 833, 989
ApaLI GTGCAC 1 cut(s) 1023
ApeKI GCWGC 1 cut(s) 923
ApoI RAATTY 1 cut(s) 376
AspS9I GGNCC 3 cut(s) 630, 739, 833
AsuC2I CCSGG 4 cut(s) 634, 635, 729, 730
AsuHPI GGTGA 1 cut(s) 32
AvaI CYCGRG 2 cut(s) 633, 728
AvaII GGWCC 1 cut(s) 739
BaeGI GKGCMC 1 cut(s) 1027
BalI TGGCCA 2 cut(s) 80, 312
BamHI GGATCC 1 cut(s) 643
BanII GRGCYC 1 cut(s) 438
BbrPI CACGTG 1 cut(s) 920
Bbv12I GWGCWC 2 cut(s) 569, 1027
BbvI GCAGC 1 cut(s) 910
BccI CCATC 2 cut(s) 321, 767
BceAI ACGGC 1 cut(s) 644
BciT130I CCWGG 1 cut(s) 1029
BcnI CCSGG 4 cut(s) 634, 635, 729, 730
BcoDI GTCTC 1 cut(s) 243
BfaI CTAG 1 cut(s) 803
BfmI CTRYAG 2 cut(s) 554, 924
BfuAI ACCTGC 2 cut(s) 478, 917
BglI GCCNNNNNGGC 1 cut(s) 997
BisI GCNGC 5 cut(s) 100, 289, 924, 998, 1001
BlsI GCNGC 5 cut(s) 101, 290, 925, 999, 1002
Bme1390I CCNGG 5 cut(s) 634, 635, 729, 730, 1029
Bme18I GGWCC 1 cut(s) 739
BmeRI GACNNNNNGTC 1 cut(s) 115
BmeT110I CYCGRG 2 cut(s) 633, 728
BmgT120I GGNCC 3 cut(s) 630, 739, 833
BmiI GGNNCC 4 cut(s) 435, 632, 645, 762
BmrFI CCNGG 5 cut(s) 634, 635, 729, 730, 1029
BmrI ACTGGG 1 cut(s) 109
BmsI GCATC 1 cut(s) 197
BmuI ACTGGG 1 cut(s) 109
BpuEI CTTGAG 5 cut(s) 47, 366, 578, 695, 949
BpuMI CCSGG 4 cut(s) 634, 635, 729, 730
Bsa29I ATCGAT 1 cut(s) 816
BsaAI YACGTR 1 cut(s) 920
BsaJI CCNNGG 6 cut(s) 632, 633, 728, 729, 742, 992
BsaWI WCCGGW 2 cut(s) 457, 575
Bsc4I CCNNNNNNNGG 2 cut(s) 640, 842
Bse1I ACTGG 3 cut(s) 115, 313, 657
BseAI TCCGGA 1 cut(s) 575
BseBI CCWGG 1 cut(s) 1029
BseCI ATCGAT 1 cut(s) 816
BseDI CCNNGG 6 cut(s) 632, 633, 728, 729, 742, 992
BseLI CCNNNNNNNGG 2 cut(s) 640, 842
BseNI ACTGG 3 cut(s) 115, 313, 657
BseRI GAGGAG 3 cut(s) 139, 231, 248
BseSI GKGCMC 1 cut(s) 1027
BseXI GCAGC 1 cut(s) 910
BshFI GGCC 5 cut(s) 80, 312, 631, 835, 991
BshVI ATCGAT 1 cut(s) 816
BsiHKAI GWGCWC 2 cut(s) 569, 1027
BsiHKCI CYCGRG 2 cut(s) 633, 728
BsiSI CCGG 4 cut(s) 458, 576, 634, 729
BslFI GGGAC 1 cut(s) 899
BslI CCNNNNNNNGG 2 cut(s) 640, 842
BsmAI GTCTC 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 899
BsnI GGCC 5 cut(s) 80, 312, 631, 835, 991
BsoBI CYCGRG 2 cut(s) 633, 728
Bsp1286I GDGCHC 3 cut(s) 438, 569, 1027
Bsp13I TCCGGA 1 cut(s) 575
Bsp1407I TGTACA 2 cut(s) 72, 780
Bsp143I GATC 2 cut(s) 395, 643
BspACI CCGC 5 cut(s) 100, 289, 871, 997, 1000
BspANI GGCC 5 cut(s) 80, 312, 631, 835, 991
BspDI ATCGAT 1 cut(s) 816
BspEI TCCGGA 1 cut(s) 575
BspLI GGNNCC 4 cut(s) 435, 632, 645, 762
BspMAI CTGCAG 2 cut(s) 558, 928
BspMI ACCTGC 2 cut(s) 478, 917
BspPI GGATC 2 cut(s) 638, 651
BsrGI TGTACA 2 cut(s) 72, 780
BsrI ACTGG 3 cut(s) 115, 313, 657
BssECI CCNNGG 6 cut(s) 632, 633, 728, 729, 742, 992
BssMI GATC 2 cut(s) 395, 643
BssT1I CCWWGG 1 cut(s) 742
Bst2UI CCWGG 1 cut(s) 1029
Bst4CI ACNGT 4 cut(s) 11, 329, 505, 785
Bst6I CTCTTC 1 cut(s) 536
BstAUI TGTACA 2 cut(s) 72, 780
BstBAI YACGTR 1 cut(s) 920
BstC8I GCNNGC 1 cut(s) 554
BstDEI CTNAG 1 cut(s) 409
BstKTI GATC 2 cut(s) 398, 646
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 2 cut(s) 395, 643
BstMWI GCNNNNNNNGC 2 cut(s) 146, 997
BstNI CCWGG 1 cut(s) 1029
BstNSI RCATGY 2 cut(s) 605, 781
BstSCI CCNGG 5 cut(s) 632, 633, 727, 728, 1027
BstSFI CTRYAG 2 cut(s) 554, 924
BstSLI GKGCMC 1 cut(s) 1027
BstV1I GCAGC 1 cut(s) 910
BstX2I RGATCY 1 cut(s) 643
BstYI RGATCY 1 cut(s) 643
Bsu15I ATCGAT 1 cut(s) 816
BsuRI GGCC 5 cut(s) 80, 312, 631, 835, 991
BsuTUI ATCGAT 1 cut(s) 816
BtgZI GCGATG 1 cut(s) 299
BtsI GCAGTG 2 cut(s) 645, 741
BtsIMutI CAGTG 5 cut(s) 231, 510, 645, 741, 790
BveI ACCTGC 2 cut(s) 478, 917
Cac8I GCNNGC 1 cut(s) 554
CaiI CAGNNNCTG 1 cut(s) 66
Cfr13I GGNCC 3 cut(s) 630, 739, 833
Cfr9I CCCGGG 2 cut(s) 633, 728
ClaI ATCGAT 1 cut(s) 816
CseI GACGC 1 cut(s) 963
Csp6I GTAC 3 cut(s) 73, 650, 781
CviAII CATG 4 cut(s) 76, 602, 770, 778
CviQI GTAC 3 cut(s) 73, 650, 781
DdeI CTNAG 1 cut(s) 409
DpnI GATC 2 cut(s) 397, 645
DpnII GATC 2 cut(s) 395, 643
DriI GACNNNNNGTC 1 cut(s) 115
EaeI YGGCCR 2 cut(s) 78, 310
Eam1104I CTCTTC 1 cut(s) 536
Eam1105I GACNNNNNGTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 536
Eco130I CCWWGG 1 cut(s) 742
Eco24I GRGCYC 1 cut(s) 438
Eco47I GGWCC 1 cut(s) 739
Eco72I CACGTG 1 cut(s) 920
Eco88I CYCGRG 2 cut(s) 633, 728
EcoRI GAATTC 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 1027
EcoT14I CCWWGG 1 cut(s) 742
EcoT38I GRGCYC 1 cut(s) 438
ErhI CCWWGG 1 cut(s) 742
FaeI CATG 4 cut(s) 79, 605, 773, 781
FaqI GGGAC 1 cut(s) 899
FatI CATG 4 cut(s) 75, 601, 769, 777
FauNDI CATATG 1 cut(s) 136
Fnu4HI GCNGC 5 cut(s) 100, 289, 924, 998, 1001
FriOI GRGCYC 1 cut(s) 438
Fsp4HI GCNGC 5 cut(s) 100, 289, 924, 998, 1001
FspBI CTAG 1 cut(s) 803
GluI GCNGC 5 cut(s) 100, 289, 924, 998, 1001
HaeIII GGCC 5 cut(s) 80, 312, 631, 835, 991
HapII CCGG 4 cut(s) 458, 576, 634, 729
HgaI GACGC 1 cut(s) 963
Hin1II CATG 4 cut(s) 79, 605, 773, 781
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 671
HinfI GANTC 5 cut(s) 110, 236, 788, 794, 893
HpaI GTTAAC 1 cut(s) 88
HpaII CCGG 4 cut(s) 458, 576, 634, 729
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 2 cut(s) 88, 1025
Hpy188I TCNGA 4 cut(s) 109, 375, 793, 799
Hpy188III TCNNGA 5 cut(s) 332, 383, 576, 595, 966
Hpy8I GTNNAC 2 cut(s) 88, 1025
Hpy99I CGWCG 1 cut(s) 957
HpyAV CCTTC 3 cut(s) 53, 422, 439
HpyCH4III ACNGT 4 cut(s) 11, 329, 505, 785
HpyCH4IV ACGT 2 cut(s) 919, 1021
HpyCH4V TGCA 7 cut(s) 167, 251, 501, 556, 926, 947, 1025
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 997
HpyF3I CTNAG 1 cut(s) 409
HpySE526I ACGT 2 cut(s) 919, 1021
Hsp92II CATG 4 cut(s) 79, 605, 773, 781
Kpn2I TCCGGA 1 cut(s) 575
KspAI GTTAAC 1 cut(s) 88
Kzo9I GATC 2 cut(s) 395, 643
LmnI GCTCC 3 cut(s) 433, 460, 760
Lsp1109I GCAGC 1 cut(s) 910
LweI GCATC 1 cut(s) 197
MaeI CTAG 1 cut(s) 803
MaeII ACGT 2 cut(s) 919, 1021
MaeIII GTNAC 2 cut(s) 93, 214
MalI GATC 2 cut(s) 397, 645
MboI GATC 2 cut(s) 395, 643
MboII GAAGA 9 cut(s) 29, 208, 221, 357, 553, 668, 679, 930, 1028
MflI RGATCY 1 cut(s) 643
MhlI GDGCHC 3 cut(s) 438, 569, 1027
MlsI TGGCCA 2 cut(s) 80, 312
MluCI AATT 3 cut(s) 376, 418, 934
MluNI TGGCCA 2 cut(s) 80, 312
MlyI GAGTC 3 cut(s) 104, 245, 887
MmeI TCCRAC 3 cut(s) 348, 382, 738
MnlI CCTC 9 cut(s) 117, 142, 252, 269, 280, 684, 867, 960, 987
Mox20I TGGCCA 2 cut(s) 80, 312
MroI TCCGGA 1 cut(s) 575
MscI TGGCCA 2 cut(s) 80, 312
MseI TTAA 6 cut(s) 87, 153, 417, 492, 531, 606
MslI CAYNNNNRTG 3 cut(s) 506, 531, 713
Msp20I TGGCCA 2 cut(s) 80, 312
MspA1I CMGCKG 1 cut(s) 871
MspI CCGG 4 cut(s) 458, 576, 634, 729
MspR9I CCNGG 5 cut(s) 634, 635, 729, 730, 1029
MvaI CCWGG 1 cut(s) 1029
MwoI GCNNNNNNNGC 2 cut(s) 146, 997
NciI CCSGG 4 cut(s) 634, 635, 729, 730
NdeI CATATG 1 cut(s) 136
NdeII GATC 2 cut(s) 395, 643
NlaIII CATG 4 cut(s) 79, 605, 773, 781
NlaIV GGNNCC 4 cut(s) 435, 632, 645, 762
NmeAIII GCCGAG 1 cut(s) 1017
NmuCI GTSAC 1 cut(s) 214
NspI RCATGY 2 cut(s) 605, 781
OliI CACNNNNGTG 1 cut(s) 506
PciI ACATGT 1 cut(s) 601
PfeI GAWTC 2 cut(s) 788, 794
PflMI CCANNNNNTGG 1 cut(s) 842
PkrI GCNGC 5 cut(s) 101, 290, 925, 999, 1002
PleI GAGTC 3 cut(s) 104, 244, 887
PmaCI CACGTG 1 cut(s) 920
PmlI CACGTG 1 cut(s) 920
PpsI GAGTC 3 cut(s) 104, 244, 887
Ppu21I YACGTR 1 cut(s) 920
PscI ACATGT 1 cut(s) 601
Psp6I CCWGG 1 cut(s) 1027
PspCI CACGTG 1 cut(s) 920
PspGI CCWGG 1 cut(s) 1027
PspN4I GGNNCC 4 cut(s) 435, 632, 645, 762
PspPI GGNCC 3 cut(s) 630, 739, 833
PstI CTGCAG 2 cut(s) 558, 928
PstNI CAGNNNCTG 1 cut(s) 66
PsuI RGATCY 1 cut(s) 643
RsaI GTAC 3 cut(s) 74, 651, 782
RsaNI GTAC 3 cut(s) 73, 650, 781
RseI CAYNNNNRTG 3 cut(s) 506, 531, 713
SaqAI TTAA 6 cut(s) 87, 153, 417, 492, 531, 606
SatI GCNGC 5 cut(s) 100, 289, 924, 998, 1001
Sau3AI GATC 2 cut(s) 395, 643
Sau96I GGNCC 3 cut(s) 630, 739, 833
SbfI CCTGCAGG 1 cut(s) 558
SchI GAGTC 3 cut(s) 104, 245, 887
ScrFI CCNGG 5 cut(s) 634, 635, 729, 730, 1029
SdaI CCTGCAGG 1 cut(s) 558
SduI GDGCHC 3 cut(s) 438, 569, 1027
SfaNI GCATC 1 cut(s) 197
SfcI CTRYAG 2 cut(s) 554, 924
SinI GGWCC 1 cut(s) 739
SmaI CCCGGG 2 cut(s) 635, 730
SmiMI CAYNNNNRTG 3 cut(s) 506, 531, 713
SmlI CTYRAG 5 cut(s) 26, 381, 593, 674, 964
SmoI CTYRAG 5 cut(s) 26, 381, 593, 674, 964
Sse8387I CCTGCAGG 1 cut(s) 558
Sse9I AATT 3 cut(s) 376, 418, 934
SsiI CCGC 5 cut(s) 100, 289, 871, 997, 1000
SspI AATATT 1 cut(s) 981
SspMI CTAG 1 cut(s) 803
StyD4I CCNGG 5 cut(s) 632, 633, 727, 728, 1027
StyI CCWWGG 1 cut(s) 742
TaaI ACNGT 4 cut(s) 11, 329, 505, 785
TaiI ACGT 2 cut(s) 922, 1024
TaqI TCGA 3 cut(s) 422, 816, 952
TasI AATT 3 cut(s) 376, 418, 934
TatI WGTACW 3 cut(s) 72, 649, 780
TauI GCSGC 4 cut(s) 102, 291, 1000, 1003
TfiI GAWTC 2 cut(s) 788, 794
Tru1I TTAA 6 cut(s) 87, 153, 417, 492, 531, 606
Tru9I TTAA 6 cut(s) 87, 153, 417, 492, 531, 606
TscAI CASTG 5 cut(s) 231, 510, 645, 741, 790
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 1 cut(s) 923
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 33
TspGWI ACGGA 1 cut(s) 152
TspMI CCCGGG 2 cut(s) 633, 728
TspRI CASTG 5 cut(s) 231, 510, 645, 741, 790
Van91I CCANNNNNTGG 1 cut(s) 842
VneI GTGCAC 1 cut(s) 1023
VpaK11BI GGWCC 1 cut(s) 739
XapI RAATTY 1 cut(s) 376
XceI RCATGY 2 cut(s) 605, 781
XmaI CCCGGG 2 cut(s) 633, 728
XspI CTAG 1 cut(s) 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.