Rh7AG495600

Protein of unknown function (DUF1644)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0006060
Physical Location & Seq
Forward (+)
69593305 .. 69597255
3951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG495600.1

Sequence Viewer

Length: 969 bp
ATGGCCAAAGTTAACAAGTTACGCCGCAAATCTGACTCCCAGTCTTTGAGGAGAACCTCATATGCTCTAAAGGCTCTTAAAAATGTCCGTGCAAAAAAGAAATCTGCCCAAGCATCGAAGAAGAAAGATTGGGAAGATGTGACCTGTTCAGTGTGTATGGAGTCTCCTCACAATGCAGTTCTCCTCCTTTGTTCCTCTTATGATAAGGGTTGCCGCCCTTATATGTGTGCTACTGGCCATCGCTATTCCAACTGTCTTGAACAATACCAAAAAGCATACACAAAAGTTTCTTCTATTCAGAATTCTCAAGAATGGGATAGATCAGTTGGAAACTTAGGTGTTAATTCGAGTGAAGGGGAGCCCATAGAGAAGGGGGAGAAACCGGAGCTTTTATGCCCACTTTGTCGGGGGCAGGTTAAGGGTTGCACAGTGGTGGAACGGGCAAGGAAACATCTTAATGCCAAGAAGAGAACTTGCCTGCAGGATAAGTGCTCATTCTCCGGAACTTACAGAGAACTCAAGAAACATGTTAAGTCAAAGCACCCATTGGCACGGCCCCGGGCAGTGGATCCTGTACTGGAAGAAAAATGGAAGAAGCTTGAGCGTGAAAGAGAGAGGAATGATGTAATCAGCACCATAATGTCATCTACACCAGGGGCAGTGGTCCTCGGGGATTATGTTTTGGAGCCTAACCATGATGGCATGTACAGTGATTCTGATTCTGAACTAGATGACTACATCGATGATTTGGGATTTGGGCCATTTGTTGGTCTAAATGGTGGTCTTTTTTCACAGCGGAGGTTTCAAAGGGACTATGACTCATTAGATGATGATGATTTTTCACGTGCAGCAGGTTCTAATTCTTCTGTTGCACCTCGACGCAGTTTCTCAAGAAACAGGGTAATATTTGGTAGGCCGAGGCGGCGGCGTAGAAATAGAGAAGAACGTGCACCTGGACGATTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1644

Protein Analysis

322

Amino Acids

36.7

Weight (kDa)

9.6

Isoelectric Point (pI)

57.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1644 PF07800 45 - 211 4e-68 Protein of unknown function (DUF1644)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 403, 842
AccB7I CCANNNNNTGG 1 cut(s) 767
AccIII TCCGGA 1 cut(s) 500
AciI CCGC 5 cut(s) 25, 214, 796, 922, 925
AclWI GGATC 2 cut(s) 563, 576
AcoI YGGCCR 2 cut(s) 3, 235
AcsI RAATTY 1 cut(s) 301
AcvI CACGTG 1 cut(s) 845
AfaI GTAC 2 cut(s) 576, 707
AfiI CCNNNNNNNGG 2 cut(s) 565, 767
AflIII ACRYGT 1 cut(s) 526
AgsI TTSAA 2 cut(s) 260, 806
AhdI GACNNNNNGTC 1 cut(s) 40
AjnI CCWGG 2 cut(s) 652, 952
AleI CACNNNNGTG 1 cut(s) 431
AluBI AGCT 2 cut(s) 388, 598
AluI AGCT 2 cut(s) 388, 598
Alw21I GWGCWC 2 cut(s) 494, 952
Alw26I GTCTC 1 cut(s) 168
Alw44I GTGCAC 1 cut(s) 948
AlwI GGATC 2 cut(s) 563, 576
Ama87I CYCGRG 2 cut(s) 558, 668
Aor13HI TCCGGA 1 cut(s) 500
AoxI GGCC 5 cut(s) 3, 235, 554, 758, 914
ApaLI GTGCAC 1 cut(s) 948
ApeKI GCWGC 1 cut(s) 848
ApoI RAATTY 1 cut(s) 301
AspS9I GGNCC 3 cut(s) 555, 664, 758
AsuC2I CCSGG 2 cut(s) 559, 560
AvaI CYCGRG 2 cut(s) 558, 668
AvaII GGWCC 1 cut(s) 664
BaeGI GKGCMC 1 cut(s) 952
BalI TGGCCA 2 cut(s) 5, 237
BamHI GGATCC 1 cut(s) 568
BanII GRGCYC 1 cut(s) 363
BbrPI CACGTG 1 cut(s) 845
Bbv12I GWGCWC 2 cut(s) 494, 952
BbvI GCAGC 1 cut(s) 860
BccI CCATC 2 cut(s) 246, 692
BceAI ACGGC 1 cut(s) 569
BciT130I CCWGG 2 cut(s) 654, 954
BcnI CCSGG 2 cut(s) 559, 560
BcoDI GTCTC 1 cut(s) 168
BfaI CTAG 1 cut(s) 728
BfmI CTRYAG 1 cut(s) 479
BfuAI ACCTGC 2 cut(s) 403, 842
BglI GCCNNNNNGGC 1 cut(s) 922
BisI GCNGC 5 cut(s) 25, 214, 849, 923, 926
BlsI GCNGC 5 cut(s) 26, 215, 850, 924, 927
Bme1390I CCNGG 4 cut(s) 559, 560, 654, 954
Bme18I GGWCC 1 cut(s) 664
BmeRI GACNNNNNGTC 1 cut(s) 40
BmeT110I CYCGRG 2 cut(s) 558, 668
BmgT120I GGNCC 3 cut(s) 555, 664, 758
BmiI GGNNCC 4 cut(s) 360, 557, 570, 687
BmrFI CCNGG 4 cut(s) 559, 560, 654, 954
BmrI ACTGGG 1 cut(s) 34
BmsI GCATC 1 cut(s) 122
BmuI ACTGGG 1 cut(s) 34
BpuEI CTTGAG 4 cut(s) 291, 503, 620, 874
BpuMI CCSGG 2 cut(s) 559, 560
Bsa29I ATCGAT 1 cut(s) 741
BsaAI YACGTR 1 cut(s) 845
BsaJI CCNNGG 5 cut(s) 557, 558, 653, 667, 917
BsaWI WCCGGW 2 cut(s) 382, 500
Bsc4I CCNNNNNNNGG 2 cut(s) 565, 767
Bse1I ACTGG 3 cut(s) 40, 238, 582
BseAI TCCGGA 1 cut(s) 500
BseBI CCWGG 2 cut(s) 654, 954
BseCI ATCGAT 1 cut(s) 741
BseDI CCNNGG 5 cut(s) 557, 558, 653, 667, 917
BseLI CCNNNNNNNGG 2 cut(s) 565, 767
BseNI ACTGG 3 cut(s) 40, 238, 582
BseRI GAGGAG 3 cut(s) 64, 156, 173
BseSI GKGCMC 1 cut(s) 952
BseXI GCAGC 1 cut(s) 860
BsgI GTGCAG 1 cut(s) 867
BshFI GGCC 5 cut(s) 5, 237, 556, 760, 916
BshVI ATCGAT 1 cut(s) 741
BsiHKAI GWGCWC 2 cut(s) 494, 952
BsiHKCI CYCGRG 2 cut(s) 558, 668
BsiSI CCGG 3 cut(s) 383, 501, 559
BslFI GGGAC 1 cut(s) 824
BslI CCNNNNNNNGG 2 cut(s) 565, 767
BsmAI GTCTC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 824
BsnI GGCC 5 cut(s) 5, 237, 556, 760, 916
BsoBI CYCGRG 2 cut(s) 558, 668
Bsp1286I GDGCHC 3 cut(s) 363, 494, 952
Bsp13I TCCGGA 1 cut(s) 500
Bsp1407I TGTACA 1 cut(s) 705
Bsp143I GATC 2 cut(s) 320, 568
BspACI CCGC 5 cut(s) 25, 214, 796, 922, 925
BspANI GGCC 5 cut(s) 5, 237, 556, 760, 916
BspDI ATCGAT 1 cut(s) 741
BspEI TCCGGA 1 cut(s) 500
BspLI GGNNCC 4 cut(s) 360, 557, 570, 687
BspMAI CTGCAG 1 cut(s) 483
BspMI ACCTGC 2 cut(s) 403, 842
BspPI GGATC 2 cut(s) 563, 576
BsrGI TGTACA 1 cut(s) 705
BsrI ACTGG 3 cut(s) 40, 238, 582
BssECI CCNNGG 5 cut(s) 557, 558, 653, 667, 917
BssMI GATC 2 cut(s) 320, 568
Bst2UI CCWGG 2 cut(s) 654, 954
Bst4CI ACNGT 3 cut(s) 254, 430, 710
Bst6I CTCTTC 1 cut(s) 461
BstAUI TGTACA 1 cut(s) 705
BstBAI YACGTR 1 cut(s) 845
BstC8I GCNNGC 1 cut(s) 479
BstDEI CTNAG 1 cut(s) 334
BstKTI GATC 2 cut(s) 323, 571
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 2 cut(s) 320, 568
BstMWI GCNNNNNNNGC 2 cut(s) 71, 922
BstNI CCWGG 2 cut(s) 654, 954
BstNSI RCATGY 2 cut(s) 530, 706
BstSCI CCNGG 4 cut(s) 557, 558, 652, 952
BstSFI CTRYAG 1 cut(s) 479
BstSLI GKGCMC 1 cut(s) 952
BstV1I GCAGC 1 cut(s) 860
BstX2I RGATCY 1 cut(s) 568
BstYI RGATCY 1 cut(s) 568
Bsu15I ATCGAT 1 cut(s) 741
BsuRI GGCC 5 cut(s) 5, 237, 556, 760, 916
BsuTUI ATCGAT 1 cut(s) 741
BtgZI GCGATG 1 cut(s) 224
BtsI GCAGTG 2 cut(s) 570, 666
BtsIMutI CAGTG 5 cut(s) 156, 435, 570, 666, 715
BveI ACCTGC 2 cut(s) 403, 842
Cac8I GCNNGC 1 cut(s) 479
Cfr13I GGNCC 3 cut(s) 555, 664, 758
Cfr9I CCCGGG 1 cut(s) 558
ClaI ATCGAT 1 cut(s) 741
CseI GACGC 1 cut(s) 888
Csp6I GTAC 2 cut(s) 575, 706
CviAII CATG 3 cut(s) 527, 695, 703
CviQI GTAC 2 cut(s) 575, 706
DdeI CTNAG 1 cut(s) 334
DpnI GATC 2 cut(s) 322, 570
DpnII GATC 2 cut(s) 320, 568
DriI GACNNNNNGTC 1 cut(s) 40
EaeI YGGCCR 2 cut(s) 3, 235
Eam1104I CTCTTC 1 cut(s) 461
Eam1105I GACNNNNNGTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 461
Eco24I GRGCYC 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 664
Eco72I CACGTG 1 cut(s) 845
Eco88I CYCGRG 2 cut(s) 558, 668
EcoRI GAATTC 1 cut(s) 301
EcoRII CCWGG 2 cut(s) 652, 952
EcoT38I GRGCYC 1 cut(s) 363
FaeI CATG 3 cut(s) 530, 698, 706
FaqI GGGAC 1 cut(s) 824
FatI CATG 3 cut(s) 526, 694, 702
FauNDI CATATG 1 cut(s) 61
Fnu4HI GCNGC 5 cut(s) 25, 214, 849, 923, 926
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 5 cut(s) 25, 214, 849, 923, 926
FspBI CTAG 1 cut(s) 728
GluI GCNGC 5 cut(s) 25, 214, 849, 923, 926
HaeIII GGCC 5 cut(s) 5, 237, 556, 760, 916
HapII CCGG 3 cut(s) 383, 501, 559
HgaI GACGC 1 cut(s) 888
Hin1II CATG 3 cut(s) 530, 698, 706
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 5 cut(s) 35, 161, 713, 719, 818
HpaI GTTAAC 1 cut(s) 13
HpaII CCGG 3 cut(s) 383, 501, 559
Hpy166II GTNNAC 2 cut(s) 13, 950
Hpy188I TCNGA 4 cut(s) 34, 300, 718, 724
Hpy188III TCNNGA 5 cut(s) 257, 308, 501, 520, 891
Hpy8I GTNNAC 2 cut(s) 13, 950
Hpy99I CGWCG 1 cut(s) 882
HpyAV CCTTC 2 cut(s) 347, 364
HpyCH4III ACNGT 3 cut(s) 254, 430, 710
HpyCH4IV ACGT 2 cut(s) 844, 946
HpyCH4V TGCA 7 cut(s) 92, 176, 426, 481, 848, 872, 950
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 922
HpyF3I CTNAG 1 cut(s) 334
HpySE526I ACGT 2 cut(s) 844, 946
Hsp92II CATG 3 cut(s) 530, 698, 706
Kpn2I TCCGGA 1 cut(s) 500
KspAI GTTAAC 1 cut(s) 13
Kzo9I GATC 2 cut(s) 320, 568
LmnI GCTCC 3 cut(s) 358, 385, 685
Lsp1109I GCAGC 1 cut(s) 860
LweI GCATC 1 cut(s) 122
MaeI CTAG 1 cut(s) 728
MaeII ACGT 2 cut(s) 844, 946
MaeIII GTNAC 2 cut(s) 18, 139
MalI GATC 2 cut(s) 322, 570
MboI GATC 2 cut(s) 320, 568
MboII GAAGA 9 cut(s) 130, 133, 146, 282, 478, 593, 604, 855, 953
MflI RGATCY 1 cut(s) 568
MhlI GDGCHC 3 cut(s) 363, 494, 952
MlsI TGGCCA 2 cut(s) 5, 237
MluCI AATT 3 cut(s) 301, 343, 859
MluNI TGGCCA 2 cut(s) 5, 237
MlyI GAGTC 3 cut(s) 29, 170, 812
MmeI TCCRAC 2 cut(s) 273, 307
Mox20I TGGCCA 2 cut(s) 5, 237
MroI TCCGGA 1 cut(s) 500
MscI TGGCCA 2 cut(s) 5, 237
MseI TTAA 6 cut(s) 12, 78, 342, 417, 456, 531
MslI CAYNNNNRTG 3 cut(s) 431, 456, 638
Msp20I TGGCCA 2 cut(s) 5, 237
MspA1I CMGCKG 1 cut(s) 796
MspI CCGG 3 cut(s) 383, 501, 559
MspR9I CCNGG 4 cut(s) 559, 560, 654, 954
MvaI CCWGG 2 cut(s) 654, 954
MwoI GCNNNNNNNGC 2 cut(s) 71, 922
NciI CCSGG 2 cut(s) 559, 560
NdeI CATATG 1 cut(s) 61
NdeII GATC 2 cut(s) 320, 568
NlaIII CATG 3 cut(s) 530, 698, 706
NlaIV GGNNCC 4 cut(s) 360, 557, 570, 687
NmeAIII GCCGAG 1 cut(s) 942
NmuCI GTSAC 1 cut(s) 139
NspI RCATGY 2 cut(s) 530, 706
OliI CACNNNNGTG 1 cut(s) 431
PciI ACATGT 1 cut(s) 526
PfeI GAWTC 2 cut(s) 713, 719
PflMI CCANNNNNTGG 1 cut(s) 767
PkrI GCNGC 5 cut(s) 26, 215, 850, 924, 927
PleI GAGTC 3 cut(s) 29, 169, 812
PmaCI CACGTG 1 cut(s) 845
PmlI CACGTG 1 cut(s) 845
PpsI GAGTC 3 cut(s) 29, 169, 812
Ppu21I YACGTR 1 cut(s) 845
PscI ACATGT 1 cut(s) 526
Psp6I CCWGG 2 cut(s) 652, 952
PspCI CACGTG 1 cut(s) 845
PspGI CCWGG 2 cut(s) 652, 952
PspN4I GGNNCC 4 cut(s) 360, 557, 570, 687
PspPI GGNCC 3 cut(s) 555, 664, 758
PstI CTGCAG 1 cut(s) 483
PsuI RGATCY 1 cut(s) 568
RsaI GTAC 2 cut(s) 576, 707
RsaNI GTAC 2 cut(s) 575, 706
RseI CAYNNNNRTG 3 cut(s) 431, 456, 638
SaqAI TTAA 6 cut(s) 12, 78, 342, 417, 456, 531
SatI GCNGC 5 cut(s) 25, 214, 849, 923, 926
Sau3AI GATC 2 cut(s) 320, 568
Sau96I GGNCC 3 cut(s) 555, 664, 758
SbfI CCTGCAGG 1 cut(s) 483
SchI GAGTC 3 cut(s) 29, 170, 812
ScrFI CCNGG 4 cut(s) 559, 560, 654, 954
SdaI CCTGCAGG 1 cut(s) 483
SduI GDGCHC 3 cut(s) 363, 494, 952
SfaNI GCATC 1 cut(s) 122
SfcI CTRYAG 1 cut(s) 479
SinI GGWCC 1 cut(s) 664
SmaI CCCGGG 1 cut(s) 560
SmiMI CAYNNNNRTG 3 cut(s) 431, 456, 638
SmlI CTYRAG 4 cut(s) 306, 518, 599, 889
SmoI CTYRAG 4 cut(s) 306, 518, 599, 889
Sse8387I CCTGCAGG 1 cut(s) 483
Sse9I AATT 3 cut(s) 301, 343, 859
SsiI CCGC 5 cut(s) 25, 214, 796, 922, 925
SspI AATATT 1 cut(s) 906
SspMI CTAG 1 cut(s) 728
StyD4I CCNGG 4 cut(s) 557, 558, 652, 952
TaaI ACNGT 3 cut(s) 254, 430, 710
TaiI ACGT 2 cut(s) 847, 949
TaqI TCGA 4 cut(s) 116, 347, 741, 877
TasI AATT 3 cut(s) 301, 343, 859
TatI WGTACW 2 cut(s) 574, 705
TauI GCSGC 4 cut(s) 27, 216, 925, 928
TfiI GAWTC 2 cut(s) 713, 719
Tru1I TTAA 6 cut(s) 12, 78, 342, 417, 456, 531
Tru9I TTAA 6 cut(s) 12, 78, 342, 417, 456, 531
TscAI CASTG 5 cut(s) 156, 435, 570, 666, 715
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 848
Tsp45I GTSAC 1 cut(s) 139
TspGWI ACGGA 1 cut(s) 77
TspMI CCCGGG 1 cut(s) 558
TspRI CASTG 5 cut(s) 156, 435, 570, 666, 715
Van91I CCANNNNNTGG 1 cut(s) 767
VneI GTGCAC 1 cut(s) 948
VpaK11BI GGWCC 1 cut(s) 664
XapI RAATTY 1 cut(s) 301
XceI RCATGY 2 cut(s) 530, 706
XmaI CCCGGG 1 cut(s) 558
XspI CTAG 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.