Rorug07G0340700

Protein of unknown function (DUF1644)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0006060
Physical Location & Seq
Reverse (-)
37555091 .. 37555615
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0340700.1

Sequence Viewer

Length: 525 bp
ATGTCGAGCGACAAGACGATCGGCCGTGGCGACGACGCCTTCAACACCTTCGTCTTCGAGACCGGTGCCGGCAAACACATCCCACGAGCCATCTTCATCCACCTCGAGCCTACCGTCATCGACGAGGTCCTCACCGGAACCTACCGCCAGCTCTTCCATCCCGAGCAGCTCATCTCCGGCAAGGAGGACGCCGCCAATAACTTCTCCCGTGGTCACTACACCATCGGCAAAGAGATCGTCGATCTCTGCCTGGATCTGATCCGGAAGCTCGCTGATAACTGCACCGGGCTCCAGGGATTCCTTGTCTTCAATGCCGTCGGTGGCGGTACCGGGTTAGGTCTCGGGTTGCTTCTGCTGGAGAGGCCTTCTGTGGACTATGGGAAAAAGTCCAAGCTCGGATTCACTGTGTATCCTTCTCCTCAGGTTTCTACGTCTGTTGTCGAGCCCTATAACAGTGTGCTCTCCACTCATTCTCTGCTTGAGCACACCAATGTGTCTGTGTTGCTCGATAATGAGTTATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1644

Protein Analysis

174

Amino Acids

18.92

Weight (kDa)

5.43

Isoelectric Point (pI)

24.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tubulin PF00091 13 - 173 1.6e-40 Tubulin/FtsZ family, GTPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 326
AccB1I GGYRCC 2 cut(s) 65, 326
AccIII TCCGGA 1 cut(s) 261
AciI CCGC 3 cut(s) 145, 192, 324
AclWI GGATC 2 cut(s) 253, 261
AcoI YGGCCR 1 cut(s) 22
AcyI GRCGYC 2 cut(s) 36, 189
AfaI GTAC 1 cut(s) 328
AgeI ACCGGT 1 cut(s) 62
AgsI TTSAA 2 cut(s) 43, 310
AjnI CCWGG 2 cut(s) 249, 291
AjuI GAANNNNNNNTTGG 2 cut(s) 383, 415
AleI CACNNNNGTG 1 cut(s) 491
AluBI AGCT 4 cut(s) 151, 169, 268, 394
AluI AGCT 4 cut(s) 151, 169, 268, 394
Alw21I GWGCWC 2 cut(s) 462, 486
Alw26I GTCTC 2 cut(s) 53, 344
AlwI GGATC 2 cut(s) 253, 261
Ama87I CYCGRG 3 cut(s) 104, 161, 341
Aor13HI TCCGGA 1 cut(s) 261
AoxI GGCC 2 cut(s) 22, 362
ApeKI GCWGC 1 cut(s) 166
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
AsiGI ACCGGT 1 cut(s) 62
Asp718I GGTACC 1 cut(s) 326
AspS9I GGNCC 1 cut(s) 127
AsuC2I CCSGG 2 cut(s) 286, 331
AsuHPI GGTGA 1 cut(s) 124
AvaI CYCGRG 3 cut(s) 104, 161, 341
AvaII GGWCC 1 cut(s) 127
AxyI CCTNAGG 1 cut(s) 420
BanI GGYRCC 2 cut(s) 65, 326
BanII GRGCYC 2 cut(s) 291, 447
BauI CACGAG 1 cut(s) 84
BbsI GAAGAC 2 cut(s) 46, 298
Bbv12I GWGCWC 2 cut(s) 462, 486
BbvI GCAGC 1 cut(s) 178
BccI CCATC 3 cut(s) 98, 165, 230
BceAI ACGGC 2 cut(s) 9, 299
BcgI CGANNNNNNTGC 4 cut(s) 47, 81, 217, 251
BciT130I CCWGG 2 cut(s) 251, 293
BciVI GTATCC 1 cut(s) 420
BcnI CCSGG 2 cut(s) 286, 331
BcoDI GTCTC 2 cut(s) 53, 344
BfuI GTATCC 1 cut(s) 420
BisI GCNGC 2 cut(s) 167, 192
BlsI GCNGC 2 cut(s) 168, 193
Bme1390I CCNGG 4 cut(s) 251, 286, 293, 331
Bme18I GGWCC 1 cut(s) 127
BmeT110I CYCGRG 3 cut(s) 104, 161, 341
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 4 cut(s) 67, 139, 290, 328
BmrFI CCNGG 4 cut(s) 251, 286, 293, 331
BpiI GAAGAC 2 cut(s) 46, 298
BpmI CTGGAG 2 cut(s) 275, 377
BpuEI CTTGAG 1 cut(s) 500
BpuMI CCSGG 2 cut(s) 286, 331
BsaHI GRCGYC 2 cut(s) 36, 189
BsaI GGTCTC 2 cut(s) 53, 344
BsaJI CCNNGG 3 cut(s) 25, 208, 292
BsaWI WCCGGW 3 cut(s) 62, 134, 261
Bse118I RCCGGY 2 cut(s) 62, 68
Bse21I CCTNAGG 1 cut(s) 420
BseAI TCCGGA 1 cut(s) 261
BseBI CCWGG 2 cut(s) 251, 293
BseDI CCNNGG 3 cut(s) 25, 208, 292
BseGI GGATG 3 cut(s) 78, 96, 157
BseMII CTCAG 1 cut(s) 434
BseRI GAGGAG 1 cut(s) 408
BseX3I CGGCCG 1 cut(s) 22
BseXI GCAGC 1 cut(s) 178
BsgI GTGCAG 1 cut(s) 265
Bsh1285I CGRYCG 2 cut(s) 21, 25
BshFI GGCC 2 cut(s) 24, 364
BshNI GGYRCC 2 cut(s) 65, 326
BshTI ACCGGT 1 cut(s) 62
BsiEI CGRYCG 2 cut(s) 21, 25
BsiHKAI GWGCWC 2 cut(s) 462, 486
BsiHKCI CYCGRG 3 cut(s) 104, 161, 341
BsiSI CCGG 7 cut(s) 63, 69, 135, 177, 262, 285, 330
BsmAI GTCTC 2 cut(s) 53, 344
BsnI GGCC 2 cut(s) 24, 364
Bso31I GGTCTC 2 cut(s) 53, 344
BsoBI CYCGRG 3 cut(s) 104, 161, 341
Bsp1286I GDGCHC 4 cut(s) 291, 447, 462, 486
Bsp13I TCCGGA 1 cut(s) 261
Bsp143I GATC 5 cut(s) 18, 234, 241, 253, 258
BspACI CCGC 3 cut(s) 145, 192, 324
BspANI GGCC 2 cut(s) 24, 364
BspCNI CTCAG 1 cut(s) 433
BspEI TCCGGA 1 cut(s) 261
BspLI GGNNCC 4 cut(s) 67, 139, 290, 328
BspPI GGATC 2 cut(s) 253, 261
BspQI GCTCTTC 1 cut(s) 158
BspT107I GGYRCC 2 cut(s) 65, 326
BspTNI GGTCTC 2 cut(s) 53, 344
BsrFI RCCGGY 2 cut(s) 62, 68
BssAI RCCGGY 2 cut(s) 62, 68
BssECI CCNNGG 3 cut(s) 25, 208, 292
BssMI GATC 5 cut(s) 18, 234, 241, 253, 258
BssNI GRCGYC 2 cut(s) 36, 189
BssSI CACGAG 1 cut(s) 84
Bst2BI CACGAG 1 cut(s) 84
Bst2UI CCWGG 2 cut(s) 251, 293
Bst4CI ACNGT 3 cut(s) 115, 406, 455
Bst6I CTCTTC 1 cut(s) 158
BstACI GRCGYC 2 cut(s) 36, 189
BstC8I GCNNGC 3 cut(s) 70, 149, 270
BstDEI CTNAG 1 cut(s) 420
BstDSI CCRYGG 2 cut(s) 25, 208
BstF5I GGATG 3 cut(s) 78, 96, 157
BstKTI GATC 5 cut(s) 21, 237, 244, 256, 261
BstMAI GTCTC 2 cut(s) 53, 344
BstMBI GATC 5 cut(s) 18, 234, 241, 253, 258
BstMCI CGRYCG 2 cut(s) 21, 25
BstMWI GCNNNNNNNGC 1 cut(s) 361
BstNI CCWGG 2 cut(s) 251, 293
BstSCI CCNGG 4 cut(s) 249, 284, 291, 329
BstV1I GCAGC 1 cut(s) 178
BstV2I GAAGAC 2 cut(s) 46, 298
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BstZI CGGCCG 1 cut(s) 22
Bsu36I CCTNAGG 1 cut(s) 420
BsuI GTATCC 1 cut(s) 420
BsuRI GGCC 2 cut(s) 24, 364
BtgI CCRYGG 2 cut(s) 25, 208
BtsCI GGATG 3 cut(s) 78, 96, 157
BtsIMutI CAGTG 2 cut(s) 402, 460
Cac8I GCNNGC 3 cut(s) 70, 149, 270
Cfr10I RCCGGY 2 cut(s) 62, 68
Cfr13I GGNCC 1 cut(s) 127
CseI GACGC 2 cut(s) 44, 197
Csp6I GTAC 1 cut(s) 327
CspAI ACCGGT 1 cut(s) 62
CviQI GTAC 1 cut(s) 327
DdeI CTNAG 1 cut(s) 420
DpnI GATC 5 cut(s) 20, 236, 243, 255, 260
DpnII GATC 5 cut(s) 18, 234, 241, 253, 258
EaeI YGGCCR 1 cut(s) 22
EagI CGGCCG 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
EclXI CGGCCG 1 cut(s) 22
Eco147I AGGCCT 1 cut(s) 364
Eco24I GRGCYC 2 cut(s) 291, 447
Eco31I GGTCTC 2 cut(s) 53, 344
Eco47I GGWCC 1 cut(s) 127
Eco52I CGGCCG 1 cut(s) 22
Eco81I CCTNAGG 1 cut(s) 420
Eco88I CYCGRG 3 cut(s) 104, 161, 341
EcoO109I RGGNCCY 1 cut(s) 127
EcoRII CCWGG 2 cut(s) 249, 291
EcoT38I GRGCYC 2 cut(s) 291, 447
FaiI YATR 3 cut(s) 378, 450, 523
Fnu4HI GCNGC 2 cut(s) 167, 192
FokI GGATG 3 cut(s) 65, 83, 144
FriOI GRGCYC 2 cut(s) 291, 447
Fsp4HI GCNGC 2 cut(s) 167, 192
GluI GCNGC 2 cut(s) 167, 192
GsuI CTGGAG 2 cut(s) 275, 377
HaeIII GGCC 2 cut(s) 24, 364
HapII CCGG 7 cut(s) 63, 69, 135, 177, 262, 285, 330
HgaI GACGC 2 cut(s) 44, 197
Hin1I GRCGYC 2 cut(s) 36, 189
HinfI GANTC 2 cut(s) 297, 399
HpaII CCGG 7 cut(s) 63, 69, 135, 177, 262, 285, 330
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 2 cut(s) 258, 398
Hpy188III TCNNGA 3 cut(s) 58, 161, 262
Hpy8I GTNNAC 1 cut(s) 373
Hpy99I CGWCG 5 cut(s) 35, 38, 125, 242, 320
HpyAV CCTTC 4 cut(s) 49, 58, 375, 423
HpyCH4III ACNGT 3 cut(s) 115, 406, 455
HpyCH4IV ACGT 1 cut(s) 431
HpyCH4V TGCA 1 cut(s) 282
HpyF10VI GCNNNNNNNGC 1 cut(s) 361
HpyF3I CTNAG 1 cut(s) 420
HpySE526I ACGT 1 cut(s) 431
Hsp92I GRCGYC 2 cut(s) 36, 189
Kpn2I TCCGGA 1 cut(s) 261
KpnI GGTACC 1 cut(s) 330
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
Kzo9I GATC 5 cut(s) 18, 234, 241, 253, 258
LguI GCTCTTC 1 cut(s) 158
LmnI GCTCC 1 cut(s) 294
Lsp1109I GCAGC 1 cut(s) 178
MaeII ACGT 1 cut(s) 431
MaeIII GTNAC 1 cut(s) 212
MalI GATC 5 cut(s) 20, 236, 243, 255, 260
MboI GATC 5 cut(s) 18, 234, 241, 253, 258
MboII GAAGA 4 cut(s) 46, 85, 145, 298
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 4 cut(s) 291, 447, 462, 486
MnlI CCTC 6 cut(s) 113, 118, 140, 178, 354, 429
MroI TCCGGA 1 cut(s) 261
MroNI GCCGGC 1 cut(s) 68
MslI CAYNNNNRTG 2 cut(s) 489, 491
MspI CCGG 7 cut(s) 63, 69, 135, 177, 262, 285, 330
MspR9I CCNGG 4 cut(s) 251, 286, 293, 331
MvaI CCWGG 2 cut(s) 251, 293
MwoI GCNNNNNNNGC 1 cut(s) 361
NaeI GCCGGC 1 cut(s) 70
NciI CCSGG 2 cut(s) 286, 331
NdeII GATC 5 cut(s) 18, 234, 241, 253, 258
NgoMIV GCCGGC 1 cut(s) 68
NlaIV GGNNCC 4 cut(s) 67, 139, 290, 328
NmuCI GTSAC 1 cut(s) 212
OliI CACNNNNGTG 1 cut(s) 491
PaeR7I CTCGAG 1 cut(s) 104
PceI AGGCCT 1 cut(s) 364
PciSI GCTCTTC 1 cut(s) 158
PcsI WCGNNNNNNNCGW 2 cut(s) 27, 111
PdiI GCCGGC 1 cut(s) 70
PfeI GAWTC 2 cut(s) 297, 399
PflFI GACNNNGTC 1 cut(s) 125
PinAI ACCGGT 1 cut(s) 62
PkrI GCNGC 2 cut(s) 168, 193
Ple19I CGATCG 1 cut(s) 21
PpuMI RGGWCCY 1 cut(s) 127
Psp5II RGGWCCY 1 cut(s) 127
Psp6I CCWGG 2 cut(s) 249, 291
PspGI CCWGG 2 cut(s) 249, 291
PspN4I GGNNCC 4 cut(s) 67, 139, 290, 328
PspPI GGNCC 1 cut(s) 127
PspPPI RGGWCCY 1 cut(s) 127
PspXI VCTCGAGB 1 cut(s) 104
PsuI RGATCY 1 cut(s) 253
PsyI GACNNNGTC 1 cut(s) 125
PvuI CGATCG 1 cut(s) 21
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
RseI CAYNNNNRTG 2 cut(s) 489, 491
SapI GCTCTTC 1 cut(s) 158
SatI GCNGC 2 cut(s) 167, 192
Sau3AI GATC 5 cut(s) 18, 234, 241, 253, 258
Sau96I GGNCC 1 cut(s) 127
ScrFI CCNGG 4 cut(s) 251, 286, 293, 331
SduI GDGCHC 4 cut(s) 291, 447, 462, 486
Sfr274I CTCGAG 1 cut(s) 104
SinI GGWCC 1 cut(s) 127
SlaI CTCGAG 1 cut(s) 104
SmiMI CAYNNNNRTG 2 cut(s) 489, 491
SmlI CTYRAG 2 cut(s) 104, 479
SmoI CTYRAG 2 cut(s) 104, 479
SseBI AGGCCT 1 cut(s) 364
SsiI CCGC 3 cut(s) 145, 192, 324
StuI AGGCCT 1 cut(s) 364
StyD4I CCNGG 4 cut(s) 249, 284, 291, 329
TaaI ACNGT 3 cut(s) 115, 406, 455
TaiI ACGT 1 cut(s) 434
TaqI TCGA 7 cut(s) 5, 57, 105, 120, 240, 441, 507
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 2 cut(s) 297, 399
TscAI CASTG 2 cut(s) 409, 460
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 85
TspRI CASTG 2 cut(s) 409, 460
Tth111I GACNNNGTC 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 127
XhoI CTCGAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.