Rw7G041880

Protein of unknown function (DUF1644)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0006060
Physical Location & Seq
Forward (+)
65498747 .. 65501657
2911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041880.1

Sequence Viewer

Length: 999 bp
ATGATTTACTGTTATGAAAAACTTGAGAATAATCTTCACCTTCTTTTGTCAAGTTTCAGGTTCTGTTTGTACATGGCCAAAGTTAACAAGTTACGCCGCAAATCTGACTCCCAGTCTTTGAGGAGAACCTCATATGCTCTAAAGGCTCTTAAAAATGTCCGTGCAAAAAAGAAATCTGCCCAAGCATCGAAGAAGAAAGATTGGGAAGATGTGACCTGTTCAGTGTGTATGGAGTCTCCTCACAATGCAGTTCTCCTCCTTTGTTCCTCTTATGATAAGGGTTGCCGCCCTTATATGTGTGCTACTGGCCATCGCTATTCCAACTGTCTTGAACAATACCAAAAAGCATACACAAAAGTTTCTTCTATTCAGAATTCTCAAGAATGGGATAGATCAGTTGGAAACTTGGGTGTTAATTCGAGTGAAGGGGAGCCCATAGAGAAGGGGGAGAAACCGGAGCTTTTATGCCCACTTTGTCGGGGGCAGGTTAAGGGTTGCACAGTGGTGGAACGGGCAAGGAAACATCTTAATGCCAAGAAGAGAACTTGCCTGCAGGATAAGTGCTCATTCTCCGGAACTTACAGAGAACTCAAGAAACATGTTAAGTCAAAGCACCCATTGGCACGGCCCCGGGCAGTGGATCCTAGGAATGATGTAATCAGCACCATAATGTCATCTACACCAGGGGCAGTGGTCCTTGGGGATTATGTGTTGGAGCCTAACCATGATGGCATGTACAGTGATTCTGATTCTGAACTAGATGACTACATCGATGATTTGGGATTTGGGCCATTTGTTGGTCTAAATGGTGGTCTTTTTTCACAGCGGAGGTTTCAAAGGGACTATGACTCATTAGATGATGATGATTTTTCACGTGCAGCAGGTTCTAATTCTTCTGTTGCACCTCGACGCAGTTTCTCAAGAAACAGAGTAATATTTGGTAGGCCGAGGCGGCGGCGTAGAAATAGAGAAGAACGTGCACCTGGACGATTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1644

Protein Analysis

332

Amino Acids

37.84

Weight (kDa)

9.52

Isoelectric Point (pI)

56.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1644 PF07800 69 - 217 2.1e-60 Protein of unknown function (DUF1644)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 475, 872
AccB7I CCANNNNNTGG 1 cut(s) 797
AccIII TCCGGA 1 cut(s) 572
AciI CCGC 5 cut(s) 97, 286, 826, 952, 955
AclWI GGATC 2 cut(s) 635, 648
AcoI YGGCCR 2 cut(s) 75, 307
AcsI RAATTY 1 cut(s) 373
AcvI CACGTG 1 cut(s) 875
AfaI GTAC 2 cut(s) 71, 737
AfiI CCNNNNNNNGG 2 cut(s) 637, 797
AflIII ACRYGT 1 cut(s) 598
AgsI TTSAA 2 cut(s) 332, 836
AhdI GACNNNNNGTC 1 cut(s) 112
AjnI CCWGG 2 cut(s) 682, 982
AleI CACNNNNGTG 1 cut(s) 503
AluBI AGCT 1 cut(s) 460
AluI AGCT 1 cut(s) 460
Alw21I GWGCWC 2 cut(s) 566, 982
Alw26I GTCTC 1 cut(s) 240
Alw44I GTGCAC 1 cut(s) 978
AlwI GGATC 2 cut(s) 635, 648
AlwNI CAGNNNCTG 1 cut(s) 63
Ama87I CYCGRG 1 cut(s) 630
Aor13HI TCCGGA 1 cut(s) 572
AoxI GGCC 5 cut(s) 75, 307, 626, 788, 944
ApaLI GTGCAC 1 cut(s) 978
ApeKI GCWGC 1 cut(s) 878
ApoI RAATTY 1 cut(s) 373
AspA2I CCTAGG 1 cut(s) 644
AspS9I GGNCC 3 cut(s) 627, 694, 788
AsuC2I CCSGG 2 cut(s) 631, 632
AsuHPI GGTGA 1 cut(s) 29
AvaI CYCGRG 1 cut(s) 630
AvaII GGWCC 1 cut(s) 694
AvrII CCTAGG 1 cut(s) 644
BaeGI GKGCMC 1 cut(s) 982
BalI TGGCCA 2 cut(s) 77, 309
BamHI GGATCC 1 cut(s) 640
BanII GRGCYC 1 cut(s) 435
BbrPI CACGTG 1 cut(s) 875
Bbv12I GWGCWC 2 cut(s) 566, 982
BbvI GCAGC 1 cut(s) 890
BccI CCATC 2 cut(s) 318, 722
BceAI ACGGC 1 cut(s) 641
BciT130I CCWGG 2 cut(s) 684, 984
BcnI CCSGG 2 cut(s) 631, 632
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 2 cut(s) 645, 758
BfmI CTRYAG 1 cut(s) 551
BfuAI ACCTGC 2 cut(s) 475, 872
BglI GCCNNNNNGGC 1 cut(s) 952
BisI GCNGC 5 cut(s) 97, 286, 879, 953, 956
BlnI CCTAGG 1 cut(s) 644
BlsI GCNGC 5 cut(s) 98, 287, 880, 954, 957
Bme1390I CCNGG 4 cut(s) 631, 632, 684, 984
Bme18I GGWCC 1 cut(s) 694
BmeRI GACNNNNNGTC 1 cut(s) 112
BmeT110I CYCGRG 1 cut(s) 630
BmgT120I GGNCC 3 cut(s) 627, 694, 788
BmiI GGNNCC 4 cut(s) 432, 629, 642, 717
BmrFI CCNGG 4 cut(s) 631, 632, 684, 984
BmrI ACTGGG 1 cut(s) 106
BmsI GCATC 1 cut(s) 194
BmuI ACTGGG 1 cut(s) 106
BpuEI CTTGAG 4 cut(s) 44, 363, 575, 904
BpuMI CCSGG 2 cut(s) 631, 632
Bsa29I ATCGAT 1 cut(s) 771
BsaAI YACGTR 1 cut(s) 875
BsaJI CCNNGG 6 cut(s) 629, 630, 644, 683, 697, 947
BsaWI WCCGGW 2 cut(s) 454, 572
Bsc4I CCNNNNNNNGG 2 cut(s) 637, 797
Bse1I ACTGG 2 cut(s) 112, 310
BseAI TCCGGA 1 cut(s) 572
BseBI CCWGG 2 cut(s) 684, 984
BseCI ATCGAT 1 cut(s) 771
BseDI CCNNGG 6 cut(s) 629, 630, 644, 683, 697, 947
BseLI CCNNNNNNNGG 2 cut(s) 637, 797
BseNI ACTGG 2 cut(s) 112, 310
BseRI GAGGAG 3 cut(s) 136, 228, 245
BseSI GKGCMC 1 cut(s) 982
BseXI GCAGC 1 cut(s) 890
BsgI GTGCAG 1 cut(s) 897
BshFI GGCC 5 cut(s) 77, 309, 628, 790, 946
BshVI ATCGAT 1 cut(s) 771
BsiHKAI GWGCWC 2 cut(s) 566, 982
BsiHKCI CYCGRG 1 cut(s) 630
BsiSI CCGG 3 cut(s) 455, 573, 631
BslFI GGGAC 1 cut(s) 854
BslI CCNNNNNNNGG 2 cut(s) 637, 797
BsmAI GTCTC 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 854
BsnI GGCC 5 cut(s) 77, 309, 628, 790, 946
BsoBI CYCGRG 1 cut(s) 630
Bsp1286I GDGCHC 3 cut(s) 435, 566, 982
Bsp13I TCCGGA 1 cut(s) 572
Bsp1407I TGTACA 2 cut(s) 69, 735
Bsp143I GATC 2 cut(s) 392, 640
BspACI CCGC 5 cut(s) 97, 286, 826, 952, 955
BspANI GGCC 5 cut(s) 77, 309, 628, 790, 946
BspDI ATCGAT 1 cut(s) 771
BspEI TCCGGA 1 cut(s) 572
BspLI GGNNCC 4 cut(s) 432, 629, 642, 717
BspMAI CTGCAG 1 cut(s) 555
BspMI ACCTGC 2 cut(s) 475, 872
BspPI GGATC 2 cut(s) 635, 648
BsrGI TGTACA 2 cut(s) 69, 735
BsrI ACTGG 2 cut(s) 112, 310
BssECI CCNNGG 6 cut(s) 629, 630, 644, 683, 697, 947
BssMI GATC 2 cut(s) 392, 640
BssT1I CCWWGG 2 cut(s) 644, 697
Bst2UI CCWGG 2 cut(s) 684, 984
Bst4CI ACNGT 4 cut(s) 11, 326, 502, 740
Bst6I CTCTTC 1 cut(s) 533
BstAUI TGTACA 2 cut(s) 69, 735
BstBAI YACGTR 1 cut(s) 875
BstC8I GCNNGC 1 cut(s) 551
BstKTI GATC 2 cut(s) 395, 643
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 2 cut(s) 392, 640
BstMWI GCNNNNNNNGC 2 cut(s) 143, 952
BstNI CCWGG 2 cut(s) 684, 984
BstNSI RCATGY 2 cut(s) 602, 736
BstSCI CCNGG 4 cut(s) 629, 630, 682, 982
BstSFI CTRYAG 1 cut(s) 551
BstSLI GKGCMC 1 cut(s) 982
BstV1I GCAGC 1 cut(s) 890
BstX2I RGATCY 1 cut(s) 640
BstYI RGATCY 1 cut(s) 640
Bsu15I ATCGAT 1 cut(s) 771
BsuRI GGCC 5 cut(s) 77, 309, 628, 790, 946
BsuTUI ATCGAT 1 cut(s) 771
BtgZI GCGATG 1 cut(s) 296
BtsI GCAGTG 2 cut(s) 642, 696
BtsIMutI CAGTG 5 cut(s) 228, 507, 642, 696, 745
BveI ACCTGC 2 cut(s) 475, 872
Cac8I GCNNGC 1 cut(s) 551
CaiI CAGNNNCTG 1 cut(s) 63
Cfr13I GGNCC 3 cut(s) 627, 694, 788
Cfr9I CCCGGG 1 cut(s) 630
ClaI ATCGAT 1 cut(s) 771
CseI GACGC 1 cut(s) 918
Csp6I GTAC 2 cut(s) 70, 736
CviAII CATG 4 cut(s) 73, 599, 725, 733
CviJI RGCY 9 cut(s) 77, 146, 309, 433, 460, 628, 718, 790, 946
CviKI_1 RGCY 9 cut(s) 77, 146, 309, 433, 460, 628, 718, 790, 946
CviQI GTAC 2 cut(s) 70, 736
DpnI GATC 2 cut(s) 394, 642
DpnII GATC 2 cut(s) 392, 640
DriI GACNNNNNGTC 1 cut(s) 112
EaeI YGGCCR 2 cut(s) 75, 307
Eam1104I CTCTTC 1 cut(s) 533
Eam1105I GACNNNNNGTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 533
Eco130I CCWWGG 2 cut(s) 644, 697
Eco24I GRGCYC 1 cut(s) 435
Eco47I GGWCC 1 cut(s) 694
Eco72I CACGTG 1 cut(s) 875
Eco88I CYCGRG 1 cut(s) 630
EcoRI GAATTC 1 cut(s) 373
EcoRII CCWGG 2 cut(s) 682, 982
EcoT14I CCWWGG 2 cut(s) 644, 697
EcoT38I GRGCYC 1 cut(s) 435
ErhI CCWWGG 2 cut(s) 644, 697
FaeI CATG 4 cut(s) 76, 602, 728, 736
FaqI GGGAC 1 cut(s) 854
FatI CATG 4 cut(s) 72, 598, 724, 732
FauNDI CATATG 1 cut(s) 133
Fnu4HI GCNGC 5 cut(s) 97, 286, 879, 953, 956
FriOI GRGCYC 1 cut(s) 435
Fsp4HI GCNGC 5 cut(s) 97, 286, 879, 953, 956
FspBI CTAG 2 cut(s) 645, 758
GluI GCNGC 5 cut(s) 97, 286, 879, 953, 956
HaeIII GGCC 5 cut(s) 77, 309, 628, 790, 946
HapII CCGG 3 cut(s) 455, 573, 631
HgaI GACGC 1 cut(s) 918
Hin1II CATG 4 cut(s) 76, 602, 728, 736
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 5 cut(s) 107, 233, 743, 749, 848
HpaI GTTAAC 1 cut(s) 85
HpaII CCGG 3 cut(s) 455, 573, 631
HphI GGTGA 1 cut(s) 29
Hpy166II GTNNAC 2 cut(s) 85, 980
Hpy188I TCNGA 4 cut(s) 106, 372, 748, 754
Hpy188III TCNNGA 5 cut(s) 329, 380, 573, 592, 921
Hpy8I GTNNAC 2 cut(s) 85, 980
Hpy99I CGWCG 1 cut(s) 912
HpyAV CCTTC 3 cut(s) 50, 419, 436
HpyCH4III ACNGT 4 cut(s) 11, 326, 502, 740
HpyCH4IV ACGT 2 cut(s) 874, 976
HpyCH4V TGCA 7 cut(s) 164, 248, 498, 553, 878, 902, 980
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 952
HpySE526I ACGT 2 cut(s) 874, 976
Hsp92II CATG 4 cut(s) 76, 602, 728, 736
Kpn2I TCCGGA 1 cut(s) 572
KspAI GTTAAC 1 cut(s) 85
Kzo9I GATC 2 cut(s) 392, 640
LmnI GCTCC 3 cut(s) 430, 457, 715
Lsp1109I GCAGC 1 cut(s) 890
LweI GCATC 1 cut(s) 194
MaeI CTAG 2 cut(s) 645, 758
MaeII ACGT 2 cut(s) 874, 976
MaeIII GTNAC 2 cut(s) 90, 211
MalI GATC 2 cut(s) 394, 642
MboI GATC 2 cut(s) 392, 640
MboII GAAGA 8 cut(s) 26, 202, 205, 218, 354, 550, 885, 983
MflI RGATCY 1 cut(s) 640
MhlI GDGCHC 3 cut(s) 435, 566, 982
MlsI TGGCCA 2 cut(s) 77, 309
MluCI AATT 3 cut(s) 373, 415, 889
MluNI TGGCCA 2 cut(s) 77, 309
MlyI GAGTC 3 cut(s) 101, 242, 842
MmeI TCCRAC 3 cut(s) 345, 379, 693
MnlI CCTC 8 cut(s) 114, 139, 249, 266, 277, 822, 915, 942
Mox20I TGGCCA 2 cut(s) 77, 309
MroI TCCGGA 1 cut(s) 572
MscI TGGCCA 2 cut(s) 77, 309
MseI TTAA 6 cut(s) 84, 150, 414, 489, 528, 603
MslI CAYNNNNRTG 3 cut(s) 503, 528, 668
Msp20I TGGCCA 2 cut(s) 77, 309
MspA1I CMGCKG 1 cut(s) 826
MspI CCGG 3 cut(s) 455, 573, 631
MspR9I CCNGG 4 cut(s) 631, 632, 684, 984
MvaI CCWGG 2 cut(s) 684, 984
MwoI GCNNNNNNNGC 2 cut(s) 143, 952
NciI CCSGG 2 cut(s) 631, 632
NdeI CATATG 1 cut(s) 133
NdeII GATC 2 cut(s) 392, 640
NlaIII CATG 4 cut(s) 76, 602, 728, 736
NlaIV GGNNCC 4 cut(s) 432, 629, 642, 717
NmeAIII GCCGAG 1 cut(s) 972
NmuCI GTSAC 1 cut(s) 211
NspI RCATGY 2 cut(s) 602, 736
OliI CACNNNNGTG 1 cut(s) 503
PciI ACATGT 1 cut(s) 598
PfeI GAWTC 2 cut(s) 743, 749
PflMI CCANNNNNTGG 1 cut(s) 797
PkrI GCNGC 5 cut(s) 98, 287, 880, 954, 957
PleI GAGTC 3 cut(s) 101, 241, 842
PmaCI CACGTG 1 cut(s) 875
PmlI CACGTG 1 cut(s) 875
PpsI GAGTC 3 cut(s) 101, 241, 842
Ppu21I YACGTR 1 cut(s) 875
PscI ACATGT 1 cut(s) 598
Psp6I CCWGG 2 cut(s) 682, 982
PspCI CACGTG 1 cut(s) 875
PspGI CCWGG 2 cut(s) 682, 982
PspN4I GGNNCC 4 cut(s) 432, 629, 642, 717
PspPI GGNCC 3 cut(s) 627, 694, 788
PstI CTGCAG 1 cut(s) 555
PstNI CAGNNNCTG 1 cut(s) 63
PsuI RGATCY 1 cut(s) 640
RsaI GTAC 2 cut(s) 71, 737
RsaNI GTAC 2 cut(s) 70, 736
RseI CAYNNNNRTG 3 cut(s) 503, 528, 668
SaqAI TTAA 6 cut(s) 84, 150, 414, 489, 528, 603
SatI GCNGC 5 cut(s) 97, 286, 879, 953, 956
Sau3AI GATC 2 cut(s) 392, 640
Sau96I GGNCC 3 cut(s) 627, 694, 788
SbfI CCTGCAGG 1 cut(s) 555
SchI GAGTC 3 cut(s) 101, 242, 842
ScrFI CCNGG 4 cut(s) 631, 632, 684, 984
SdaI CCTGCAGG 1 cut(s) 555
SduI GDGCHC 3 cut(s) 435, 566, 982
SfaNI GCATC 1 cut(s) 194
SfcI CTRYAG 1 cut(s) 551
SinI GGWCC 1 cut(s) 694
SmaI CCCGGG 1 cut(s) 632
SmiMI CAYNNNNRTG 3 cut(s) 503, 528, 668
SmlI CTYRAG 4 cut(s) 23, 378, 590, 919
SmoI CTYRAG 4 cut(s) 23, 378, 590, 919
Sse8387I CCTGCAGG 1 cut(s) 555
Sse9I AATT 3 cut(s) 373, 415, 889
SsiI CCGC 5 cut(s) 97, 286, 826, 952, 955
SspI AATATT 1 cut(s) 936
SspMI CTAG 2 cut(s) 645, 758
StyD4I CCNGG 4 cut(s) 629, 630, 682, 982
StyI CCWWGG 2 cut(s) 644, 697
TaaI ACNGT 4 cut(s) 11, 326, 502, 740
TaiI ACGT 2 cut(s) 877, 979
TaqI TCGA 4 cut(s) 188, 419, 771, 907
TasI AATT 3 cut(s) 373, 415, 889
TatI WGTACW 2 cut(s) 69, 735
TauI GCSGC 4 cut(s) 99, 288, 955, 958
TfiI GAWTC 2 cut(s) 743, 749
Tru1I TTAA 6 cut(s) 84, 150, 414, 489, 528, 603
Tru9I TTAA 6 cut(s) 84, 150, 414, 489, 528, 603
TscAI CASTG 5 cut(s) 228, 507, 642, 696, 745
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 1 cut(s) 878
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 30
TspGWI ACGGA 1 cut(s) 149
TspMI CCCGGG 1 cut(s) 630
TspRI CASTG 5 cut(s) 228, 507, 642, 696, 745
Van91I CCANNNNNTGG 1 cut(s) 797
VneI GTGCAC 1 cut(s) 978
VpaK11BI GGWCC 1 cut(s) 694
XapI RAATTY 1 cut(s) 373
XceI RCATGY 2 cut(s) 602, 736
XmaI CCCGGG 1 cut(s) 630
XmaJI CCTAGG 1 cut(s) 644
XspI CTAG 2 cut(s) 645, 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.