Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004195

Physical Location & Seq

Genomic Coordinates Forward (+)

29508951 .. 29511021

Gene Structure 2071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G78430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGCCAAAACCAAGTATTAGAGGTTCAGAGTTGCCTCAGAGGCAATCTCCTAGGCTAAGGACATCACTGTTGTCCACTTCCTCTGATCCGCATCACCTCAGCCGTCCGATTACAGACCGGAGTCCAAAGCTCGGCCTTGACCGTAGATCTCCAAGGAGTGGTGGGCCTCATACAGATCCGCTGAGTCAGAAGAAGCTTGGAAGTCGCATCTCTGGCTTGGAGTCACAGCTAGGACAAGCCCAAGAAGAGTTGAGATTGCTCAAACAGCAGTTGGCTAAAGCCGAGGCTGCCAAGAAACGTGCTCAAGAAGAGCTTCATAGGAAGAAATCCAAGAAACCGAACACTCCTGCTCCGGAGAGAGATGACATTCCTGGAGATGGACATCAAGAGACAGATGTGTTCGAGGTTCTTGATGAGAAAGCAAAAGAAAGTGAGAAGACGAAGAATGATGAATTGGCTTCTAAGGAAGACCAAATCAATGTATTGAAAGCTAGATTATATGACTTGGAGAAAGAAAGGGTATCACTTAGCGAGGAGAATGAGACCTTGAAGGATCAGTTGAAGAAGACGGATACGGAAATGTCCTGCGCAAAGGCGAAAGAGGATGAGATAGCTTCAAAGGTGAGTCAGATTGGGGAAGAATTGGAAGAAAGCAATGAGACCACAGCGAAGCTAAAGAAGAAGCTCGAATCCGTGGAAGAAGCAAAAGAGACTCTAGAAGCTGAGATGAAGAAGCTGAAGGTCCAAACAGAGCAGTGGAGGAAAGCAGCAGATGCTGCAGCTGCGGTTTTATCTGGAGGGGTTGAGATGAATGGTCGGTTCTCAGAGCAGTGTGGGTCAATGGAGAAGCATTTTGCAGGCAGGTTTGTCGGATCACCGGGAATGGCTGATGATTCGGATGACGGGTCTGGGAAGAGGAAAAGTTCTGGGAAGAAGATGTTCGGTGACTTATGGAAGAAGAAAGGGCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0010817 GO:0016020 GO:0030427 GO:0032879 GO:0035838 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044463 GO:0044464 GO:0050789 GO:0051049 GO:0051286 GO:0065007 GO:0065008 GO:0071944 GO:0090404 GO:0090406 GO:0120025 GO:0120038 GO:2000012

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

324

Amino Acids

36.06

Weight (kDa)

8.74

Isoelectric Point (pI)

51.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCDC39	PF24161	139 - 256	8.2e-06	Coiled-coil domain-containing protein 39

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78430
fragaria_vesca	FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600
malus_domestica	MD05G1208600.v1.1 MD10G1195100.v1.1 MD14G1047200.v1.1
prunus_persica	Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1
pyrus_communis	pycom05g19450 pycom10g16880
rosa_chinensis	RchiOBHm_Chr5g0027741
rosa_laevigata	RLG00000033039
rosa_multiflora	Rmu_sc0013615.1_g000004 Rmu_sc0021622.1_g000001 Rmu_sc0032705.1_g000002
rosa_roxburghii	Rroxscaffold_1G00051870
rosa_rugosa	Rorug05G0100400 Rorug05G0100500 Rorug05G0100600
rosa_samantha	Rh5AG194900 Rh5BG193200 Rh5CG213400 Rh5DG195200
rosa_wichuraiana	Rw5G017790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	589
Acc36I	ACCTGC	1 cut(s)	852
AccB7I	CCANNNNNTGG	1 cut(s)	158
AccIII	TCCGGA	1 cut(s)	352
AciI	CCGC	3 cut(s)	89, 179, 785
AclWI	GGATC	4 cut(s)	80, 170, 561, 880
AcuI	CTGAAG	1 cut(s)	758
AfiI	CCNNNNNNNGG	3 cut(s)	131, 158, 377
AgsI	TTSAA	4 cut(s)	487, 550, 562, 618
AjnI	CCWGG	1 cut(s)	370
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	4 cut(s)	383, 536, 653, 704
AlwI	GGATC	4 cut(s)	80, 170, 561, 880
AlwNI	CAGNNNCTG	1 cut(s)	776
Aor13HI	TCCGGA	1 cut(s)	352
AoxI	GGCC	2 cut(s)	133, 164
ApeKI	GCWGC	5 cut(s)	287, 767, 776, 779, 782
Asp700I	GAANNNNTTC	2 cut(s)	312, 938
AspA2I	CCTAGG	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	590
AspS9I	GGNCC	2 cut(s)	164, 742
AsuC2I	CCSGG	1 cut(s)	879
AsuHPI	GGTGA	4 cut(s)	86, 634, 867, 956
AvaII	GGWCC	1 cut(s)	742
AvrII	CCTAGG	1 cut(s)	50
BbsI	GAAGAC	3 cut(s)	443, 474, 572
Bbv12I	GWGCWC	1 cut(s)	304
BbvCI	CCTCAGC	1 cut(s)	98
BbvI	GCAGC	5 cut(s)	274, 763, 769, 779, 791
BccI	CCATC	1 cut(s)	371
BceAI	ACGGC	1 cut(s)	87
BcgI	CGANNNNNNTGC	2 cut(s)	850, 884
BciT130I	CCWGG	1 cut(s)	372
BciVI	GTATCC	1 cut(s)	565
BcnI	CCSGG	1 cut(s)	879
BcoDI	GTCTC	4 cut(s)	383, 536, 653, 704
BfaI	CTAG	4 cut(s)	51, 230, 492, 716
BfmI	CTRYAG	1 cut(s)	777
BfuAI	ACCTGC	1 cut(s)	852
BfuI	GTATCC	1 cut(s)	565
BglI	GCCNNNNNGGC	1 cut(s)	40
BglII	AGATCT	1 cut(s)	146
BisI	GCNGC	5 cut(s)	288, 768, 777, 780, 783
BlnI	CCTAGG	1 cut(s)	50
BlsI	GCNGC	5 cut(s)	289, 769, 778, 781, 784
Bme1390I	CCNGG	2 cut(s)	372, 879
Bme18I	GGWCC	1 cut(s)	742
BmgT120I	GGNCC	2 cut(s)	164, 742
BmrFI	CCNGG	2 cut(s)	372, 879
BmsI	GCATC	3 cut(s)	100, 216, 763
BoxI	GACNNNNGTC	1 cut(s)	120
BpiI	GAAGAC	3 cut(s)	443, 474, 572
BplI	GAGNNNNNCTC	2 cut(s)	31, 63
BpmI	CTGGAG	2 cut(s)	393, 816
Bpu10I	CCTNAGC	2 cut(s)	56, 98
BpuEI	CTTGAG	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	879
BsaBI	GATNNNNATC	2 cut(s)	90, 381
BsaI	GGTCTC	2 cut(s)	536, 653
BsaJI	CCNNGG	4 cut(s)	50, 152, 282, 693
BsaWI	WCCGGW	2 cut(s)	117, 352
BsaXI	ACNNNNNCTCC	2 cut(s)	334, 364
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 158, 377
Bse3DI	GCAATG	1 cut(s)	661
Bse8I	GATNNNNATC	2 cut(s)	90, 381
BseAI	TCCGGA	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	4 cut(s)	50, 152, 282, 693
BseGI	GGATG	2 cut(s)	610, 904
BseJI	GATNNNNATC	2 cut(s)	90, 381
BseLI	CCNNNNNNNGG	3 cut(s)	131, 158, 377
BseMI	GCAATG	1 cut(s)	661
BseMII	CTCAG	5 cut(s)	50, 112, 173, 714, 837
BseRI	GAGGAG	1 cut(s)	548
BseXI	GCAGC	5 cut(s)	274, 763, 769, 779, 791
BshFI	GGCC	2 cut(s)	135, 166
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	3 cut(s)	118, 353, 878
BslI	CCNNNNNNNGG	3 cut(s)	131, 158, 377
BsmAI	GTCTC	4 cut(s)	383, 536, 653, 704
BsnI	GGCC	2 cut(s)	135, 166
Bso31I	GGTCTC	2 cut(s)	536, 653
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp13I	TCCGGA	1 cut(s)	352
Bsp143I	GATC	5 cut(s)	85, 146, 175, 553, 872
BspACI	CCGC	3 cut(s)	89, 179, 785
BspANI	GGCC	2 cut(s)	135, 166
BspCNI	CTCAG	5 cut(s)	49, 111, 174, 715, 836
BspEI	TCCGGA	1 cut(s)	352
BspMAI	CTGCAG	1 cut(s)	781
BspMI	ACCTGC	1 cut(s)	852
BspPI	GGATC	4 cut(s)	80, 170, 561, 880
BspQI	GCTCTTC	1 cut(s)	303
BspTNI	GGTCTC	2 cut(s)	536, 653
BsrDI	GCAATG	1 cut(s)	661
BssECI	CCNNGG	4 cut(s)	50, 152, 282, 693
BssMI	GATC	5 cut(s)	85, 146, 175, 553, 872
BssT1I	CCWWGG	2 cut(s)	50, 152
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	69, 143
Bst6I	CTCTTC	3 cut(s)	240, 303, 908
BstAPI	GCANNNNNTGC	2 cut(s)	773, 776
BstC8I	GCNNGC	1 cut(s)	859
BstDEI	CTNAG	8 cut(s)	36, 56, 98, 182, 462, 527, 723, 823
BstDSI	CCRYGG	1 cut(s)	693
BstF5I	GGATG	2 cut(s)	610, 904
BstHHI	GCGC	1 cut(s)	590
BstKTI	GATC	5 cut(s)	88, 149, 178, 556, 875
BstMAI	GTCTC	4 cut(s)	383, 536, 653, 704
BstMBI	GATC	5 cut(s)	85, 146, 175, 553, 872
BstMWI	GCNNNNNNNGC	7 cut(s)	40, 213, 265, 287, 773, 776, 782
BstNI	CCWGG	1 cut(s)	372
BstPAI	GACNNNNGTC	1 cut(s)	120
BstSCI	CCNGG	2 cut(s)	370, 877
BstSFI	CTRYAG	1 cut(s)	777
BstV1I	GCAGC	5 cut(s)	274, 763, 769, 779, 791
BstV2I	GAAGAC	3 cut(s)	443, 474, 572
BstX2I	RGATCY	2 cut(s)	146, 175
BstYI	RGATCY	2 cut(s)	146, 175
BsuI	GTATCC	1 cut(s)	565
BsuRI	GGCC	2 cut(s)	135, 166
BtgI	CCRYGG	1 cut(s)	693
BtsCI	GGATG	2 cut(s)	610, 904
BtsI	GCAGTG	2 cut(s)	761, 836
BtsIMutI	CAGTG	3 cut(s)	65, 761, 836
BveI	ACCTGC	1 cut(s)	852
Cac8I	GCNNGC	1 cut(s)	859
CaiI	CAGNNNCTG	1 cut(s)	776
CfoI	GCGC	1 cut(s)	590
Cfr13I	GGNCC	2 cut(s)	164, 742
DdeI	CTNAG	8 cut(s)	36, 56, 98, 182, 462, 527, 723, 823
DpnI	GATC	5 cut(s)	87, 148, 177, 555, 874
DpnII	GATC	5 cut(s)	85, 146, 175, 553, 872
Eam1104I	CTCTTC	3 cut(s)	240, 303, 908
EarI	CTCTTC	3 cut(s)	240, 303, 908
Eco130I	CCWWGG	2 cut(s)	50, 152
Eco31I	GGTCTC	2 cut(s)	536, 653
Eco47I	GGWCC	1 cut(s)	742
Eco57I	CTGAAG	1 cut(s)	758
EcoRII	CCWGG	1 cut(s)	370
EcoT14I	CCWWGG	2 cut(s)	50, 152
ErhI	CCWWGG	2 cut(s)	50, 152
FaiI	YATR	5 cut(s)	171, 318, 499, 501, 952
FalI	AAGNNNNNCTT	2 cut(s)	297, 329
Fnu4HI	GCNGC	5 cut(s)	288, 768, 777, 780, 783
FokI	GGATG	2 cut(s)	617, 911
Fsp4HI	GCNGC	5 cut(s)	288, 768, 777, 780, 783
FspBI	CTAG	4 cut(s)	51, 230, 492, 716
FspI	TGCGCA	1 cut(s)	589
GlaI	GCGC	1 cut(s)	589
GluI	GCNGC	5 cut(s)	288, 768, 777, 780, 783
GsuI	CTGGAG	2 cut(s)	393, 816
HaeIII	GGCC	2 cut(s)	135, 166
HapII	CCGG	3 cut(s)	118, 353, 878
HhaI	GCGC	1 cut(s)	590
Hin6I	GCGC	1 cut(s)	588
HinP1I	GCGC	1 cut(s)	588
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	7 cut(s)	121, 184, 221, 625, 689, 712, 893
HpaII	CCGG	3 cut(s)	118, 353, 878
HphI	GGTGA	4 cut(s)	86, 634, 867, 956
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	9 cut(s)	28, 39, 85, 108, 189, 630, 826, 872, 898
Hpy188III	TCNNGA	6 cut(s)	305, 353, 386, 410, 716, 795
Hpy8I	GTNNAC	1 cut(s)	75
HpyAV	CCTTC	2 cut(s)	544, 733
HpyCH4III	ACNGT	2 cut(s)	69, 143
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	2 cut(s)	779, 857
HpyF10VI	GCNNNNNNNGC	7 cut(s)	40, 213, 265, 287, 773, 776, 782
HpyF3I	CTNAG	8 cut(s)	36, 56, 98, 182, 462, 527, 723, 823
HpySE526I	ACGT	1 cut(s)	298
HspAI	GCGC	1 cut(s)	588
Kpn2I	TCCGGA	1 cut(s)	352
Kzo9I	GATC	5 cut(s)	85, 146, 175, 553, 872
LguI	GCTCTTC	1 cut(s)	303
LmnI	GCTCC	1 cut(s)	355
Lsp1109I	GCAGC	5 cut(s)	274, 763, 769, 779, 791
LweI	GCATC	3 cut(s)	100, 216, 763
MaeI	CTAG	4 cut(s)	51, 230, 492, 716
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	2 cut(s)	222, 944
MalI	GATC	5 cut(s)	87, 148, 177, 555, 874
MboI	GATC	5 cut(s)	85, 146, 175, 553, 872
MflI	RGATCY	2 cut(s)	146, 175
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	2 cut(s)	452, 641
MlyI	GAGTC	5 cut(s)	130, 193, 230, 634, 706
MmeI	TCCRAC	1 cut(s)	850
MroI	TCCGGA	1 cut(s)	352
MroXI	GAANNNNTTC	2 cut(s)	312, 938
MspA1I	CMGCKG	2 cut(s)	181, 782
MspI	CCGG	3 cut(s)	118, 353, 878
MspR9I	CCNGG	2 cut(s)	372, 879
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	7 cut(s)	40, 213, 265, 287, 773, 776, 782
NciI	CCSGG	1 cut(s)	879
NdeII	GATC	5 cut(s)	85, 146, 175, 553, 872
NmeAIII	GCCGAG	2 cut(s)	111, 307
NmuCI	GTSAC	2 cut(s)	222, 944
NsbI	TGCGCA	1 cut(s)	589
PciSI	GCTCTTC	1 cut(s)	303
PdmI	GAANNNNTTC	2 cut(s)	312, 938
PfeI	GAWTC	2 cut(s)	689, 893
PflMI	CCANNNNNTGG	1 cut(s)	158
PfoI	TCCNGGA	1 cut(s)	370
PkrI	GCNGC	5 cut(s)	289, 769, 778, 781, 784
PleI	GAGTC	5 cut(s)	129, 192, 229, 633, 706
PpsI	GAGTC	5 cut(s)	129, 192, 229, 633, 706
PshAI	GACNNNNGTC	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspPI	GGNCC	2 cut(s)	164, 742
PsrI	GAACNNNNNNTAC	2 cut(s)	7, 39
PstI	CTGCAG	1 cut(s)	781
PstNI	CAGNNNCTG	1 cut(s)	776
PsuI	RGATCY	2 cut(s)	146, 175
PvuII	CAGCTG	1 cut(s)	782
SapI	GCTCTTC	1 cut(s)	303
SatI	GCNGC	5 cut(s)	288, 768, 777, 780, 783
Sau3AI	GATC	5 cut(s)	85, 146, 175, 553, 872
Sau96I	GGNCC	2 cut(s)	164, 742
SchI	GAGTC	5 cut(s)	130, 193, 230, 634, 706
ScrFI	CCNGG	2 cut(s)	372, 879
SduI	GDGCHC	1 cut(s)	304
SfaNI	GCATC	3 cut(s)	100, 216, 763
SfcI	CTRYAG	1 cut(s)	777
SinI	GGWCC	1 cut(s)	742
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
Sse9I	AATT	2 cut(s)	452, 641
SsiI	CCGC	3 cut(s)	89, 179, 785
SspMI	CTAG	4 cut(s)	51, 230, 492, 716
StyD4I	CCNGG	2 cut(s)	370, 877
StyI	CCWWGG	2 cut(s)	50, 152
TaaI	ACNGT	2 cut(s)	69, 143
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	2 cut(s)	402, 687
TasI	AATT	2 cut(s)	452, 641
TfiI	GAWTC	2 cut(s)	689, 893
TscAI	CASTG	3 cut(s)	72, 761, 836
TseFI	GTSAC	2 cut(s)	222, 944
TseI	GCWGC	5 cut(s)	287, 767, 776, 779, 782
Tsp45I	GTSAC	2 cut(s)	222, 944
TspDTI	ATGAA	4 cut(s)	305, 465, 743, 824
TspGWI	ACGGA	3 cut(s)	584, 590, 682
TspRI	CASTG	3 cut(s)	72, 761, 836
Van91I	CCANNNNNTGG	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	742
XbaI	TCTAGA	1 cut(s)	715
XmaJI	CCTAGG	1 cut(s)	50
XmnI	GAANNNNTTC	2 cut(s)	312, 938
XspI	CTAG	4 cut(s)	51, 230, 492, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.