Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004195

Physical Location & Seq

Genomic Coordinates Forward (+)

29343223 .. 29346587

Gene Structure 3365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1195100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGCTGCGATCAAGGGGCTCTGAAATGGTTCAAAGGCCGTCTCCTCGAGGCTCACATCAACTCAGGACATCAAGCTCTGATTCAGATCCACTCCATCATCGACCAATAACTGACCGAAGTCCAAAGGTAGGAGTGGATCGCCGTTCCCCAAGAGGTACACAATCTGATCCACTAAACCAAAAGAAAATTGGAACCCGCCTTGCTGATTTGGAATCTCAGCTTGGGCAAGCACAAGAAGAGCTAAAGATACTGAAAGAGCAGTTGGCTTCAGCCGAGGCTGCAAAGAAAGAAGCACAAGAGAAACTGGAAAAGAAAATTAAGAAACGAGTTGTGACTTCTGAGCCAGCGAAGATCCATAAAACGCATCCTACATTGGAATTTCAAGATTCTAACAAAACGGACTGTTGTTCCTCTGATGAAGTTCCAGTTGACATCCAAAAGGAAACTGATGTTTTTGAAGTCCCAGTAGAAAAAGTTACAGTTGAGCCGAAGGTTGAATCTAGTGAGACTGATCAGGTTGAAGATGAAACCAAACAAGTTGATAAATCAGATGAACCAACATCGATTTTGGAAGCAGAAAAACTTTCAGCCTTACGTGACCTAGCTTTGAAGAATGATGAGATAAACATGCTAAGAGCTGAGTTGGAAGAGAAGGCAAAGCAGTTAGAAGTGTCTGGTGAAGAAAGTCAGGGTGTAAAGAATCAGCTAAACGAAGCGGCATTAAATATTTTAGCTGCCCAAGAAAAGGAAAAGGAAATGTCCTTGAAGTTAAGTCAGCTTGAAGAAGAGCTGGAAGTAAGTAAGGGAAATGCAGGTCAGTTGAACGAGAAGCTGCAAGCAACGGAAAGAGCAAAGGAAGCACTGGAAGCGGAGATGAAGAAGATGAGAGTGCAGACAGAGCAGTGGAGAAAGGCAGCAGATGCTGCTGCTGCTGTACTTGCCGGGGGTGTGGAGATGAATGGTAGAGTAATTGAGCCATCAACTGGTGGCTACACGGGCTTTGTGGGGTCACCAGCTGATGACTTGGACGATGGATTCGGTAGTGGTAAAAGAAAGGGCTCCGGCAAAAAAATGTTCGGTGACTTGTGGAAAAAGAAAGGCCAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0010817 GO:0016020 GO:0030427 GO:0032879 GO:0035838 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044463 GO:0044464 GO:0050789 GO:0051049 GO:0051286 GO:0065007 GO:0065008 GO:0071944 GO:0090404 GO:0090406 GO:0120025 GO:0120038 GO:2000012

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

370

Amino Acids

40.81

Weight (kDa)

5.52

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78430
fragaria_vesca	FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600
malus_domestica	MD05G1208600.v1.1 MD10G1195100.v1.1 MD14G1047200.v1.1
prunus_persica	Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1
pyrus_communis	pycom05g19450 pycom10g16880
rosa_chinensis	RchiOBHm_Chr5g0027741
rosa_laevigata	RLG00000033039
rosa_multiflora	Rmu_sc0013615.1_g000004 Rmu_sc0021622.1_g000001 Rmu_sc0032705.1_g000002
rosa_roxburghii	Rroxscaffold_1G00051870
rosa_rugosa	Rorug05G0100400 Rorug05G0100500 Rorug05G0100600
rosa_samantha	Rh5AG194900 Rh5BG193200 Rh5CG213400 Rh5DG195200
rosa_wichuraiana	Rw5G017790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	45
Acc36I	ACCTGC	1 cut(s)	803
AccB7I	CCANNNNNTGG	1 cut(s)	983
AciI	CCGC	3 cut(s)	196, 716, 869
AclWI	GGATC	4 cut(s)	80, 144, 161, 346
AcsI	RAATTY	1 cut(s)	377
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	2 cut(s)	157, 936
AfiI	CCNNNNNNNGG	3 cut(s)	128, 745, 983
AgsI	TTSAA	9 cut(s)	32, 383, 458, 497, 521, 610, 766, 782, 823
AjuI	GAANNNNNNNTTGG	4 cut(s)	204, 236, 245, 277
Alw26I	GTCTC	2 cut(s)	45, 500
AlwI	GGATC	4 cut(s)	80, 144, 161, 346
AlwNI	CAGNNNCTG	1 cut(s)	923
Ama87I	CYCGRG	1 cut(s)	45
AoxI	GGCC	2 cut(s)	35, 1099
ApeKI	GCWGC	8 cut(s)	4, 278, 734, 832, 914, 923, 926, 929
ApoI	RAATTY	1 cut(s)	377
ArsI	GACNNNNNNTTYG	2 cut(s)	1019, 1051
Asp700I	GAANNNNTTC	1 cut(s)	27
AsuC2I	CCSGG	1 cut(s)	943
AsuHPI	GGTGA	3 cut(s)	689, 1002, 1091
AvaI	CYCGRG	1 cut(s)	45
BanII	GRGCYC	2 cut(s)	20, 1061
BbvI	GCAGC	7 cut(s)	265, 721, 819, 910, 913, 916, 926
BccI	CCATC	3 cut(s)	102, 985, 1025
BceAI	ACGGC	2 cut(s)	22, 126
BclI	TGATCA	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	943
BcoDI	GTCTC	2 cut(s)	45, 500
BfaI	CTAG	2 cut(s)	501, 602
BfuAI	ACCTGC	1 cut(s)	803
BisI	GCNGC	9 cut(s)	5, 279, 717, 735, 833, 915, 924, 927, 930
BlsI	GCNGC	9 cut(s)	6, 280, 718, 736, 834, 916, 925, 928, 931
Bme1390I	CCNGG	1 cut(s)	943
BmeT110I	CYCGRG	1 cut(s)	45
BmiI	GGNNCC	2 cut(s)	193, 1060
BmrFI	CCNGG	1 cut(s)	943
BmrI	ACTGGG	1 cut(s)	458
BmsI	GCATC	2 cut(s)	373, 910
BmuI	ACTGGG	1 cut(s)	458
BoxI	GACNNNNGTC	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	943
Bsa29I	ATCGAT	1 cut(s)	563
BsaAI	YACGTR	1 cut(s)	596
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	273, 942
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 745, 983
Bse1I	ACTGG	5 cut(s)	309, 425, 464, 867, 988
Bse8I	GATNNNNATC	1 cut(s)	84
BseCI	ATCGAT	1 cut(s)	563
BseDI	CCNNGG	2 cut(s)	273, 942
BseGI	GGATG	2 cut(s)	364, 432
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	3 cut(s)	128, 745, 983
BseMII	CTCAG	4 cut(s)	76, 230, 330, 630
BseNI	ACTGG	5 cut(s)	309, 425, 464, 867, 988
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	7 cut(s)	265, 721, 819, 910, 913, 916, 926
BsgI	GTGCAG	1 cut(s)	911
BshFI	GGCC	2 cut(s)	37, 1101
BshVI	ATCGAT	1 cut(s)	563
BsiHKCI	CYCGRG	1 cut(s)	45
BsiSI	CCGG	2 cut(s)	942, 1062
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	3 cut(s)	128, 745, 983
BsmAI	GTCTC	2 cut(s)	45, 500
BsmBI	CGTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	446
BsnI	GGCC	2 cut(s)	37, 1101
BsoBI	CYCGRG	1 cut(s)	45
Bsp1286I	GDGCHC	2 cut(s)	20, 1061
Bsp143I	GATC	6 cut(s)	8, 85, 136, 166, 351, 511
BspACI	CCGC	3 cut(s)	196, 716, 869
BspANI	GGCC	2 cut(s)	37, 1101
BspCNI	CTCAG	4 cut(s)	75, 229, 331, 631
BspDI	ATCGAT	1 cut(s)	563
BspLI	GGNNCC	2 cut(s)	193, 1060
BspMI	ACCTGC	1 cut(s)	803
BspPI	GGATC	4 cut(s)	80, 144, 161, 346
BspQI	GCTCTTC	2 cut(s)	231, 780
BsrI	ACTGG	5 cut(s)	309, 425, 464, 867, 988
BssECI	CCNNGG	2 cut(s)	273, 942
BssMI	GATC	6 cut(s)	8, 85, 136, 166, 351, 511
Bst4CI	ACNGT	2 cut(s)	404, 481
Bst6I	CTCTTC	3 cut(s)	231, 642, 780
BstAPI	GCANNNNNTGC	2 cut(s)	920, 923
BstBAI	YACGTR	1 cut(s)	596
BstC8I	GCNNGC	3 cut(s)	228, 345, 837
BstDEI	CTNAG	5 cut(s)	62, 216, 339, 632, 639
BstEII	GGTNACC	1 cut(s)	1008
BstF5I	GGATG	2 cut(s)	364, 432
BstKTI	GATC	6 cut(s)	11, 88, 139, 169, 354, 514
BstMAI	GTCTC	2 cut(s)	45, 500
BstMBI	GATC	6 cut(s)	8, 85, 136, 166, 351, 511
BstMWI	GCNNNNNNNGC	9 cut(s)	278, 857, 866, 898, 920, 923, 929, 938, 996
BstNSI	RCATGY	1 cut(s)	631
BstPAI	GACNNNNGTC	1 cut(s)	117
BstPI	GGTNACC	1 cut(s)	1008
BstSCI	CCNGG	1 cut(s)	941
BstV1I	GCAGC	7 cut(s)	265, 721, 819, 910, 913, 916, 926
BstX2I	RGATCY	2 cut(s)	85, 351
BstYI	RGATCY	2 cut(s)	85, 351
Bsu15I	ATCGAT	1 cut(s)	563
BsuRI	GGCC	2 cut(s)	37, 1101
BsuTUI	ATCGAT	1 cut(s)	563
BtsCI	GGATG	2 cut(s)	364, 432
BtsI	GCAGTG	1 cut(s)	908
BtsIMutI	CAGTG	2 cut(s)	860, 908
BveI	ACCTGC	1 cut(s)	803
Cac8I	GCNNGC	3 cut(s)	228, 345, 837
CaiI	CAGNNNCTG	1 cut(s)	923
ClaI	ATCGAT	1 cut(s)	563
Csp6I	GTAC	2 cut(s)	156, 935
CviAII	CATG	1 cut(s)	628
CviQI	GTAC	2 cut(s)	156, 935
DdeI	CTNAG	5 cut(s)	62, 216, 339, 632, 639
DpnI	GATC	6 cut(s)	10, 87, 138, 168, 353, 513
DpnII	GATC	6 cut(s)	8, 85, 136, 166, 351, 511
Eam1104I	CTCTTC	3 cut(s)	231, 642, 780
EarI	CTCTTC	3 cut(s)	231, 642, 780
Eco24I	GRGCYC	2 cut(s)	20, 1061
Eco57I	CTGAAG	1 cut(s)	252
Eco88I	CYCGRG	1 cut(s)	45
Eco91I	GGTNACC	1 cut(s)	1008
EcoO65I	GGTNACC	1 cut(s)	1008
EcoT38I	GRGCYC	2 cut(s)	20, 1061
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	1 cut(s)	631
FaiI	YATR	2 cut(s)	357, 629
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	1 cut(s)	627
FauI	CCCGC	1 cut(s)	203
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	9 cut(s)	5, 279, 717, 735, 833, 915, 924, 927, 930
FokI	GGATG	2 cut(s)	351, 419
FriOI	GRGCYC	2 cut(s)	20, 1061
Fsp4HI	GCNGC	9 cut(s)	5, 279, 717, 735, 833, 915, 924, 927, 930
FspBI	CTAG	2 cut(s)	501, 602
GluI	GCNGC	9 cut(s)	5, 279, 717, 735, 833, 915, 924, 927, 930
HaeIII	GGCC	2 cut(s)	37, 1101
HapII	CCGG	2 cut(s)	942, 1062
Hin1II	CATG	1 cut(s)	631
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	6 cut(s)	80, 212, 386, 497, 700, 1035
HpaII	CCGG	2 cut(s)	942, 1062
HphI	GGTGA	3 cut(s)	689, 1002, 1091
Hpy166II	GTNNAC	2 cut(s)	158, 430
Hpy188I	TCNGA	7 cut(s)	22, 79, 85, 166, 340, 415, 550
Hpy188III	TCNNGA	2 cut(s)	64, 383
Hpy8I	GTNNAC	2 cut(s)	158, 430
HpyAV	CCTTC	2 cut(s)	484, 646
HpyCH4III	ACNGT	2 cut(s)	404, 481
HpyCH4IV	ACGT	1 cut(s)	595
HpyCH4V	TGCA	4 cut(s)	281, 812, 835, 892
HpyF10VI	GCNNNNNNNGC	9 cut(s)	278, 857, 866, 898, 920, 923, 929, 938, 996
HpyF3I	CTNAG	5 cut(s)	62, 216, 339, 632, 639
HpySE526I	ACGT	1 cut(s)	595
Hsp92II	CATG	1 cut(s)	631
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	6 cut(s)	8, 85, 136, 166, 351, 511
LguI	GCTCTTC	2 cut(s)	231, 780
LmnI	GCTCC	1 cut(s)	1064
Lsp1109I	GCAGC	7 cut(s)	265, 721, 819, 910, 913, 916, 926
LweI	GCATC	2 cut(s)	373, 910
MaeI	CTAG	2 cut(s)	501, 602
MaeII	ACGT	1 cut(s)	595
MaeIII	GTNAC	5 cut(s)	331, 475, 596, 1008, 1079
MalI	GATC	6 cut(s)	10, 87, 138, 168, 353, 513
MboI	GATC	6 cut(s)	8, 85, 136, 166, 351, 511
MflI	RGATCY	2 cut(s)	85, 351
MhlI	GDGCHC	2 cut(s)	20, 1061
MluCI	AATT	4 cut(s)	186, 315, 377, 969
MmeI	TCCRAC	1 cut(s)	624
MnlI	CCTC	5 cut(s)	41, 54, 146, 268, 421
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	3 cut(s)	318, 722, 770
MspA1I	CMGCKG	1 cut(s)	1016
MspI	CCGG	2 cut(s)	942, 1062
MspR9I	CCNGG	1 cut(s)	943
MwoI	GCNNNNNNNGC	9 cut(s)	278, 857, 866, 898, 920, 923, 929, 938, 996
NciI	CCSGG	1 cut(s)	943
NdeII	GATC	6 cut(s)	8, 85, 136, 166, 351, 511
NlaIII	CATG	1 cut(s)	631
NlaIV	GGNNCC	2 cut(s)	193, 1060
NmeAIII	GCCGAG	1 cut(s)	298
NmuCI	GTSAC	4 cut(s)	331, 596, 1008, 1079
NspI	RCATGY	1 cut(s)	631
PaeR7I	CTCGAG	1 cut(s)	45
PciSI	GCTCTTC	2 cut(s)	231, 780
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	6 cut(s)	80, 212, 386, 497, 700, 1035
PflMI	CCANNNNNTGG	1 cut(s)	983
PkrI	GCNGC	9 cut(s)	6, 280, 718, 736, 834, 916, 925, 928, 931
Ppu21I	YACGTR	1 cut(s)	596
PshAI	GACNNNNGTC	1 cut(s)	117
PspEI	GGTNACC	1 cut(s)	1008
PspN4I	GGNNCC	2 cut(s)	193, 1060
PspXI	VCTCGAGB	1 cut(s)	45
PstNI	CAGNNNCTG	1 cut(s)	923
PsuI	RGATCY	2 cut(s)	85, 351
PvuII	CAGCTG	1 cut(s)	1016
RsaI	GTAC	2 cut(s)	157, 936
RsaNI	GTAC	2 cut(s)	156, 935
SapI	GCTCTTC	2 cut(s)	231, 780
SaqAI	TTAA	3 cut(s)	318, 722, 770
SatI	GCNGC	9 cut(s)	5, 279, 717, 735, 833, 915, 924, 927, 930
Sau3AI	GATC	6 cut(s)	8, 85, 136, 166, 351, 511
ScrFI	CCNGG	1 cut(s)	943
SduI	GDGCHC	2 cut(s)	20, 1061
SfaNI	GCATC	2 cut(s)	373, 910
Sfr274I	CTCGAG	1 cut(s)	45
SlaI	CTCGAG	1 cut(s)	45
SmlI	CTYRAG	1 cut(s)	45
SmoI	CTYRAG	1 cut(s)	45
Sse9I	AATT	4 cut(s)	186, 315, 377, 969
SsiI	CCGC	3 cut(s)	196, 716, 869
SspI	AATATT	1 cut(s)	727
SspMI	CTAG	2 cut(s)	501, 602
StyD4I	CCNGG	1 cut(s)	941
TaaI	ACNGT	2 cut(s)	404, 481
TaiI	ACGT	1 cut(s)	598
TaqI	TCGA	3 cut(s)	46, 100, 563
TaqII	GACCGA	1 cut(s)	129
TasI	AATT	4 cut(s)	186, 315, 377, 969
TatI	WGTACW	1 cut(s)	934
TauI	GCSGC	1 cut(s)	719
TfiI	GAWTC	6 cut(s)	80, 212, 386, 497, 700, 1035
Tru1I	TTAA	3 cut(s)	318, 722, 770
Tru9I	TTAA	3 cut(s)	318, 722, 770
TscAI	CASTG	2 cut(s)	867, 908
TseFI	GTSAC	4 cut(s)	331, 596, 1008, 1079
TseI	GCWGC	8 cut(s)	4, 278, 734, 832, 914, 923, 926, 929
Tsp45I	GTSAC	4 cut(s)	331, 596, 1008, 1079
TspDTI	ATGAA	5 cut(s)	432, 540, 567, 890, 971
TspGWI	ACGGA	2 cut(s)	413, 857
TspRI	CASTG	2 cut(s)	867, 908
Van91I	CCANNNNNTGG	1 cut(s)	983
XapI	RAATTY	1 cut(s)	377
XceI	RCATGY	1 cut(s)	631
XcmI	CCANNNNNNNNNTGG	1 cut(s)	185
XhoI	CTCGAG	1 cut(s)	45
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	2 cut(s)	501, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.