Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0004195

Physical Location & Seq

Genomic Coordinates Forward (+)

4484944 .. 4485420

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1047200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGCTAAGAGCTGAGTTGGAAGAGAAAGCAAAGCAGTTAGAAGTGTCTGGTGAAGAAAGTCAGGGTATAAAGAATCAGCTAAACGAAGCGGCCTTAAATATTTTATCTGCCCAAGTAAAGGAAAAGGAAATGTCCTTGAAATTAAATCAGCTTGAAGAAGAGCTGGAAATAAGTAAGGGAAATGCAGGTCAGTTGAACGAGAAACTGCAAGCAACGGAAAGAGCAAAGGAAGCACTGGAAGCGGAGATGAAGAAGATGAGAGTGCAAACAGAGCAGTGGAGAAAGGCAGCATATGCTGCTGTACTTGCCGGGTGTGTGGAGATGAATGGTAGAGTAATTGAGCCATCAACTGGTGGCTACATCGGCTTTGTGGGGTCACCAGCTGATGACTTGGACGATGGATTCGGTAGTGGTAAAAGAAAGGGCTCTGACAAAAAAATGTTCGGTGACTTGTGGAAAAAGAAAGGCCAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0010817 GO:0016020 GO:0030427 GO:0032879 GO:0035838 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044463 GO:0044464 GO:0050789 GO:0051049 GO:0051286 GO:0065007 GO:0065008 GO:0071944 GO:0090404 GO:0090406 GO:0120025 GO:0120038 GO:2000012

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.46

Weight (kDa)

5.78

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78430
fragaria_vesca	FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600
malus_domestica	MD05G1208600.v1.1 MD10G1195100.v1.1 MD14G1047200.v1.1
prunus_persica	Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1
pyrus_communis	pycom05g19450 pycom10g16880
rosa_chinensis	RchiOBHm_Chr5g0027741
rosa_laevigata	RLG00000033039
rosa_multiflora	Rmu_sc0013615.1_g000004 Rmu_sc0021622.1_g000001 Rmu_sc0032705.1_g000002
rosa_roxburghii	Rroxscaffold_1G00051870
rosa_rugosa	Rorug05G0100400 Rorug05G0100500 Rorug05G0100600
rosa_samantha	Rh5AG194900 Rh5BG193200 Rh5CG213400 Rh5DG195200
rosa_wichuraiana	Rw5G017790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	176
AccB7I	CCANNNNNTGG	1 cut(s)	350
AciI	CCGC	2 cut(s)	89, 242
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	2 cut(s)	118, 350
AgsI	TTSAA	3 cut(s)	139, 155, 196
AluBI	AGCT	5 cut(s)	11, 79, 151, 163, 383
AluI	AGCT	5 cut(s)	11, 79, 151, 163, 383
AoxI	GGCC	2 cut(s)	90, 466
ApeKI	GCWGC	2 cut(s)	287, 296
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
AsuC2I	CCSGG	1 cut(s)	310
AsuHPI	GGTGA	3 cut(s)	62, 369, 458
BanII	GRGCYC	1 cut(s)	428
BbvI	GCAGC	2 cut(s)	283, 299
BccI	CCATC	2 cut(s)	352, 392
BcnI	CCSGG	1 cut(s)	310
BfuAI	ACCTGC	1 cut(s)	176
BisI	GCNGC	3 cut(s)	90, 288, 297
BlsI	GCNGC	3 cut(s)	91, 289, 298
Bme1390I	CCNGG	1 cut(s)	310
BmrFI	CCNGG	1 cut(s)	310
BpuMI	CCSGG	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 350
Bse1I	ACTGG	2 cut(s)	240, 355
BseLI	CCNNNNNNNGG	2 cut(s)	118, 350
BseNI	ACTGG	2 cut(s)	240, 355
BseXI	GCAGC	2 cut(s)	283, 299
BshFI	GGCC	2 cut(s)	92, 468
BsiSI	CCGG	1 cut(s)	309
BslI	CCNNNNNNNGG	2 cut(s)	118, 350
BsnI	GGCC	2 cut(s)	92, 468
Bsp1286I	GDGCHC	1 cut(s)	428
BspACI	CCGC	2 cut(s)	89, 242
BspANI	GGCC	2 cut(s)	92, 468
BspCNI	CTCAG	1 cut(s)	4
BspMI	ACCTGC	1 cut(s)	176
BspQI	GCTCTTC	1 cut(s)	153
BsrI	ACTGG	2 cut(s)	240, 355
Bst6I	CTCTTC	2 cut(s)	15, 153
BstAPI	GCANNNNNTGC	2 cut(s)	293, 296
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	2 cut(s)	5, 12
BstEII	GGTNACC	1 cut(s)	375
BstMWI	GCNNNNNNNGC	7 cut(s)	230, 239, 271, 293, 296, 305, 363
BstPI	GGTNACC	1 cut(s)	375
BstSCI	CCNGG	1 cut(s)	308
BstV1I	GCAGC	2 cut(s)	283, 299
BsuRI	GGCC	2 cut(s)	92, 468
BtsI	GCAGTG	1 cut(s)	281
BtsIMutI	CAGTG	2 cut(s)	233, 281
BveI	ACCTGC	1 cut(s)	176
Cac8I	GCNNGC	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	302
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	2 cut(s)	5, 12
Eam1104I	CTCTTC	2 cut(s)	15, 153
EarI	CTCTTC	2 cut(s)	15, 153
Eco24I	GRGCYC	1 cut(s)	428
Eco91I	GGTNACC	1 cut(s)	375
EcoO65I	GGTNACC	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	428
FaiI	YATR	3 cut(s)	68, 292, 294
FauNDI	CATATG	1 cut(s)	292
Fnu4HI	GCNGC	3 cut(s)	90, 288, 297
FriOI	GRGCYC	1 cut(s)	428
Fsp4HI	GCNGC	3 cut(s)	90, 288, 297
GluI	GCNGC	3 cut(s)	90, 288, 297
HaeIII	GGCC	2 cut(s)	92, 468
HapII	CCGG	1 cut(s)	309
HinfI	GANTC	2 cut(s)	73, 402
HpaII	CCGG	1 cut(s)	309
HphI	GGTGA	3 cut(s)	62, 369, 458
Hpy188I	TCNGA	1 cut(s)	430
HpyCH4V	TGCA	3 cut(s)	185, 208, 265
HpyF10VI	GCNNNNNNNGC	7 cut(s)	230, 239, 271, 293, 296, 305, 363
HpyF3I	CTNAG	2 cut(s)	5, 12
LguI	GCTCTTC	1 cut(s)	153
LpnPI	CCDG	8 cut(s)	33, 47, 149, 171, 221, 322, 336, 393
Lsp1109I	GCAGC	2 cut(s)	283, 299
MaeIII	GTNAC	2 cut(s)	375, 446
MboII	GAAGA	6 cut(s)	32, 65, 167, 170, 262, 265
MhlI	GDGCHC	1 cut(s)	428
MluCI	AATT	2 cut(s)	140, 336
MseI	TTAA	2 cut(s)	95, 143
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	1 cut(s)	310
MwoI	GCNNNNNNNGC	7 cut(s)	230, 239, 271, 293, 296, 305, 363
NciI	CCSGG	1 cut(s)	310
NdeI	CATATG	1 cut(s)	292
NmuCI	GTSAC	2 cut(s)	375, 446
PciSI	GCTCTTC	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	73, 402
PflMI	CCANNNNNTGG	1 cut(s)	350
PkrI	GCNGC	3 cut(s)	91, 289, 298
PspEI	GGTNACC	1 cut(s)	375
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	95, 143
SatI	GCNGC	3 cut(s)	90, 288, 297
ScrFI	CCNGG	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	428
SetI	ASST	6 cut(s)	13, 81, 153, 165, 190, 385
Sse9I	AATT	2 cut(s)	140, 336
SsiI	CCGC	2 cut(s)	89, 242
SspI	AATATT	1 cut(s)	100
StyD4I	CCNGG	1 cut(s)	308
TasI	AATT	2 cut(s)	140, 336
TatI	WGTACW	1 cut(s)	301
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	2 cut(s)	73, 402
Tru1I	TTAA	2 cut(s)	95, 143
Tru9I	TTAA	2 cut(s)	95, 143
TscAI	CASTG	2 cut(s)	240, 281
TseFI	GTSAC	2 cut(s)	375, 446
TseI	GCWGC	2 cut(s)	287, 296
Tsp45I	GTSAC	2 cut(s)	375, 446
TspDTI	ATGAA	2 cut(s)	263, 338
TspGWI	ACGGA	1 cut(s)	230
TspRI	CASTG	2 cut(s)	240, 281
Van91I	CCANNNNNTGG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.