Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004195

Physical Location & Seq

Genomic Coordinates Reverse (-)

22703750 .. 22707534

Gene Structure 3785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G017790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGCCGCGATCAAGGGGATCTGAAGTGGTTCAAAAGCCAACTCTTCGAGGTTCACATAAGCTGAGGACTTCAAGCTCTGATTCAGATCCACTGCATCATCGACCAATCACTGACCGAAGTCCAAAGCTAGGAGATCGACGTTCCCCAAGAGGTTCACAATCGGATCCACTAAGCCAAAAAAAACTTGGAACCCGCCTTGCTGATTTAGAATCTCAACTTGGCCAAGCACAAGATGAACTAAAGAGTCTAAAAGAACAATTGGCTTCAGCTGAAGCTGCAAAGAAAGAAGCCCAAGAAAAGCTGGACAAGAAAGCTAAGAAACCAGTTGTGACTTCAGGGCCAGTGAAAGTCCGCGAAACACATCCTCCATCGGAAAGTGAAGAATCTAACAAAACAGATAGCTGTCCCTCAGATGACAACAGCCAAAGGGAAACTGATGTCTTTGAAGTCCCTGCAGAAAAAGTTAAAGCTGAGACAAAGGTTGAGCCTAGCGAGACTGATCAGGTGGAAGAAGAAACCAAACCAATAGATATTTCAGCTGAACCACCATTGGTTTTGGAGCCAGAGAAGTCAGCCTTCCATGACTTGGCTTTGAAAAACGAAGAGATAGACATGCTAAAAGCCAAGTTGGAAGAGAAGGAAAAAGAGGTAGAGGTGTTTGGTCAAGAAAATCAGAGTTTAAAGAATCAAGTACAGGAAGCAGCTACAAACATCTCAACTGCTGAAGCAAAGGAAAAGGAAATGGCCTTGAAGTCGAGCAAGTTTGAAGAAGAGCTGGAAGCAAGTAAAGCTAATGCAGCACAGTTGAGTGAGAAGCTGAAAGCAACAGAAGATGCAAAGGAAGCACTGGAAGCTGAGATGAAGAAGATGAGAGTGCAGACAGAGCAGTGGAAAAAGGCCGCAGATGCTGCTGCAGCAATACTTGCTGGGGGTGTGGAGATGAATGGGAGGATTTCCGAGAGGTGGCTCCATGGACAAGCACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0010817 GO:0016020 GO:0030427 GO:0032879 GO:0035838 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044463 GO:0044464 GO:0050789 GO:0051049 GO:0051286 GO:0065007 GO:0065008 GO:0071944 GO:0090404 GO:0090406 GO:0120025 GO:0120038 GO:2000012

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

328

Amino Acids

36.26

Weight (kDa)

5.35

Isoelectric Point (pI)

54.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78430
fragaria_vesca	FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600
malus_domestica	MD05G1208600.v1.1 MD10G1195100.v1.1 MD14G1047200.v1.1
prunus_persica	Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1
pyrus_communis	pycom05g19450 pycom10g16880
rosa_chinensis	RchiOBHm_Chr5g0027741
rosa_laevigata	RLG00000033039
rosa_multiflora	Rmu_sc0013615.1_g000004 Rmu_sc0021622.1_g000001 Rmu_sc0032705.1_g000002
rosa_roxburghii	Rroxscaffold_1G00051870
rosa_rugosa	Rorug05G0100400 Rorug05G0100500 Rorug05G0100600
rosa_samantha	Rh5AG194900 Rh5BG193200 Rh5CG213400 Rh5DG195200
rosa_wichuraiana	Rw5G017790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	586
AccII	CGCG	2 cut(s)	7, 354
AciI	CCGC	4 cut(s)	5, 193, 352, 900
AclWI	GGATC	4 cut(s)	25, 80, 158, 171
AcoI	YGGCCR	1 cut(s)	220
AcuI	CTGAAG	5 cut(s)	42, 249, 291, 318, 744
AfaI	GTAC	1 cut(s)	693
AfiI	CCNNNNNNNGG	3 cut(s)	128, 586, 963
AgsI	TTSAA	6 cut(s)	32, 72, 446, 595, 751, 767
AjuI	GAANNNNNNNTTGG	4 cut(s)	201, 233, 517, 549
Alw26I	GTCTC	2 cut(s)	467, 488
AlwI	GGATC	4 cut(s)	25, 80, 158, 171
AlwNI	CAGNNNCTG	1 cut(s)	908
AoxI	GGCC	4 cut(s)	220, 338, 744, 897
ApeKI	GCWGC	6 cut(s)	275, 701, 797, 908, 911, 914
Asp700I	GAANNNNTTC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	338
BalI	TGGCCA	1 cut(s)	222
BamHI	GGATCC	1 cut(s)	163
BbvCI	CCTCAGC	1 cut(s)	62
BbvI	GCAGC	6 cut(s)	262, 713, 809, 895, 898, 926
BccI	CCATC	1 cut(s)	376
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	2 cut(s)	467, 488
BfaI	CTAG	2 cut(s)	128, 489
BfmI	CTRYAG	2 cut(s)	453, 912
BisI	GCNGC	8 cut(s)	5, 276, 702, 798, 900, 909, 912, 915
BlsI	GCNGC	8 cut(s)	6, 277, 703, 799, 901, 910, 913, 916
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	4 cut(s)	165, 190, 561, 968
BmsI	GCATC	3 cut(s)	103, 823, 895
BoxI	GACNNNNGTC	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	62
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	970
BsaXI	ACNNNNNCTCC	2 cut(s)	349, 379
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 586, 963
Bse1I	ACTGG	3 cut(s)	323, 341, 852
Bse8I	GATNNNNATC	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	970
BseGI	GGATG	1 cut(s)	361
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	3 cut(s)	128, 586, 963
BseMII	CTCAG	4 cut(s)	53, 423, 462, 846
BseNI	ACTGG	3 cut(s)	323, 341, 852
BseXI	GCAGC	6 cut(s)	262, 713, 809, 895, 898, 926
BseYI	CCCAGC	1 cut(s)	926
BsgI	GTGCAG	1 cut(s)	896
Bsh1236I	CGCG	2 cut(s)	7, 354
BshFI	GGCC	4 cut(s)	222, 340, 746, 899
BslFI	GGGAC	2 cut(s)	390, 434
BslI	CCNNNNNNNGG	3 cut(s)	128, 586, 963
BsmAI	GTCTC	2 cut(s)	467, 488
BsmFI	GGGAC	2 cut(s)	390, 434
BsnI	GGCC	4 cut(s)	222, 340, 746, 899
Bsp143I	GATC	6 cut(s)	8, 17, 85, 133, 163, 499
Bsp19I	CCATGG	1 cut(s)	970
BspACI	CCGC	4 cut(s)	5, 193, 352, 900
BspANI	GGCC	4 cut(s)	222, 340, 746, 899
BspCNI	CTCAG	4 cut(s)	54, 422, 463, 847
BspFNI	CGCG	2 cut(s)	7, 354
BspLI	GGNNCC	4 cut(s)	165, 190, 561, 968
BspMAI	CTGCAG	2 cut(s)	457, 916
BspPI	GGATC	4 cut(s)	25, 80, 158, 171
BspQI	GCTCTTC	1 cut(s)	765
BsrI	ACTGG	3 cut(s)	323, 341, 852
BssECI	CCNNGG	1 cut(s)	970
BssMI	GATC	6 cut(s)	8, 17, 85, 133, 163, 499
BssT1I	CCWWGG	1 cut(s)	970
Bst4CI	ACNGT	1 cut(s)	804
Bst6I	CTCTTC	4 cut(s)	48, 597, 627, 765
BstAPI	GCANNNNNTGC	2 cut(s)	908, 923
BstDEI	CTNAG	6 cut(s)	62, 170, 315, 409, 471, 855
BstDSI	CCRYGG	1 cut(s)	970
BstF5I	GGATG	1 cut(s)	361
BstFNI	CGCG	2 cut(s)	7, 354
BstKTI	GATC	6 cut(s)	11, 20, 88, 136, 166, 502
BstMAI	GTCTC	2 cut(s)	467, 488
BstMBI	GATC	6 cut(s)	8, 17, 85, 133, 163, 499
BstNSI	RCATGY	1 cut(s)	616
BstPAI	GACNNNNGTC	1 cut(s)	117
BstSFI	CTRYAG	2 cut(s)	453, 912
BstUI	CGCG	2 cut(s)	7, 354
BstV1I	GCAGC	6 cut(s)	262, 713, 809, 895, 898, 926
BstX2I	RGATCY	3 cut(s)	17, 85, 163
BstYI	RGATCY	3 cut(s)	17, 85, 163
BsuRI	GGCC	4 cut(s)	222, 340, 746, 899
BtgI	CCRYGG	1 cut(s)	970
BtsCI	GGATG	1 cut(s)	361
BtsI	GCAGTG	2 cut(s)	89, 893
BtsIMutI	CAGTG	5 cut(s)	89, 108, 348, 845, 893
CaiI	CAGNNNCTG	1 cut(s)	908
Cfr13I	GGNCC	1 cut(s)	338
Csp6I	GTAC	1 cut(s)	692
CviAII	CATG	3 cut(s)	581, 613, 971
CviQI	GTAC	1 cut(s)	692
DdeI	CTNAG	6 cut(s)	62, 170, 315, 409, 471, 855
DpnI	GATC	6 cut(s)	10, 19, 87, 135, 165, 501
DpnII	GATC	6 cut(s)	8, 17, 85, 133, 163, 499
DraI	TTTAAA	1 cut(s)	681
EaeI	YGGCCR	1 cut(s)	220
Eam1104I	CTCTTC	4 cut(s)	48, 597, 627, 765
EarI	CTCTTC	4 cut(s)	48, 597, 627, 765
Eco130I	CCWWGG	1 cut(s)	970
Eco57I	CTGAAG	5 cut(s)	42, 249, 291, 318, 744
EcoT14I	CCWWGG	1 cut(s)	970
ErhI	CCWWGG	1 cut(s)	970
FaeI	CATG	3 cut(s)	584, 616, 974
FaiI	YATR	4 cut(s)	57, 582, 614, 972
FalI	AAGNNNNNCTT	2 cut(s)	560, 592
FaqI	GGGAC	2 cut(s)	390, 434
FatI	CATG	3 cut(s)	580, 612, 970
FauI	CCCGC	1 cut(s)	200
FbaI	TGATCA	1 cut(s)	499
Fnu4HI	GCNGC	8 cut(s)	5, 276, 702, 798, 900, 909, 912, 915
FokI	GGATG	1 cut(s)	348
Fsp4HI	GCNGC	8 cut(s)	5, 276, 702, 798, 900, 909, 912, 915
FspBI	CTAG	2 cut(s)	128, 489
GluI	GCNGC	8 cut(s)	5, 276, 702, 798, 900, 909, 912, 915
GsaI	CCCAGC	1 cut(s)	930
HaeIII	GGCC	4 cut(s)	222, 340, 746, 899
Hin1II	CATG	3 cut(s)	584, 616, 974
HinfI	GANTC	5 cut(s)	80, 209, 244, 383, 685
Hpy166II	GTNNAC	2 cut(s)	53, 155
Hpy188I	TCNGA	8 cut(s)	22, 79, 85, 163, 373, 412, 675, 958
Hpy188III	TCNNGA	1 cut(s)	665
Hpy8I	GTNNAC	2 cut(s)	53, 155
Hpy99I	CGWCG	1 cut(s)	141
HpyAV	CCTTC	2 cut(s)	586, 631
HpyCH4III	ACNGT	1 cut(s)	804
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	7 cut(s)	94, 278, 455, 797, 836, 877, 914
HpyF3I	CTNAG	6 cut(s)	62, 170, 315, 409, 471, 855
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	3 cut(s)	584, 616, 974
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	6 cut(s)	8, 17, 85, 133, 163, 499
LguI	GCTCTTC	1 cut(s)	765
LmnI	GCTCC	2 cut(s)	559, 972
Lsp1109I	GCAGC	6 cut(s)	262, 713, 809, 895, 898, 926
LweI	GCATC	3 cut(s)	103, 823, 895
MaeI	CTAG	2 cut(s)	128, 489
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	6 cut(s)	10, 19, 87, 135, 165, 501
MboI	GATC	6 cut(s)	8, 17, 85, 133, 163, 499
MfeI	CAATTG	1 cut(s)	257
MflI	RGATCY	3 cut(s)	17, 85, 163
MlsI	TGGCCA	1 cut(s)	222
MluCI	AATT	1 cut(s)	257
MluNI	TGGCCA	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	253
MmeI	TCCRAC	1 cut(s)	609
MnlI	CCTC	9 cut(s)	41, 57, 143, 375, 418, 640, 646, 942, 954
Mox20I	TGGCCA	1 cut(s)	222
MroXI	GAANNNNTTC	1 cut(s)	27
MscI	TGGCCA	1 cut(s)	222
MseI	TTAA	3 cut(s)	465, 680, 985
Msp20I	TGGCCA	1 cut(s)	222
MspA1I	CMGCKG	2 cut(s)	269, 539
MunI	CAATTG	1 cut(s)	257
MvnI	CGCG	2 cut(s)	7, 354
NcoI	CCATGG	1 cut(s)	970
NdeII	GATC	6 cut(s)	8, 17, 85, 133, 163, 499
NlaIII	CATG	3 cut(s)	584, 616, 974
NlaIV	GGNNCC	4 cut(s)	165, 190, 561, 968
NmuCI	GTSAC	1 cut(s)	328
NspI	RCATGY	1 cut(s)	616
PciSI	GCTCTTC	1 cut(s)	765
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	4 cut(s)	80, 209, 383, 685
PflMI	CCANNNNNTGG	1 cut(s)	586
PkrI	GCNGC	8 cut(s)	6, 277, 703, 799, 901, 910, 913, 916
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
PshAI	GACNNNNGTC	1 cut(s)	117
PspFI	CCCAGC	1 cut(s)	926
PspN4I	GGNNCC	4 cut(s)	165, 190, 561, 968
PspPI	GGNCC	1 cut(s)	338
PstI	CTGCAG	2 cut(s)	457, 916
PstNI	CAGNNNCTG	1 cut(s)	908
PsuI	RGATCY	3 cut(s)	17, 85, 163
PvuII	CAGCTG	2 cut(s)	269, 539
RsaI	GTAC	1 cut(s)	693
RsaNI	GTAC	1 cut(s)	692
SapI	GCTCTTC	1 cut(s)	765
SaqAI	TTAA	3 cut(s)	465, 680, 985
SatI	GCNGC	8 cut(s)	5, 276, 702, 798, 900, 909, 912, 915
Sau3AI	GATC	6 cut(s)	8, 17, 85, 133, 163, 499
Sau96I	GGNCC	1 cut(s)	338
SchI	GAGTC	1 cut(s)	253
SfaNI	GCATC	3 cut(s)	103, 823, 895
SfcI	CTRYAG	2 cut(s)	453, 912
Sse9I	AATT	1 cut(s)	257
SsiI	CCGC	4 cut(s)	5, 193, 352, 900
SspMI	CTAG	2 cut(s)	128, 489
StyI	CCWWGG	1 cut(s)	970
TaaI	ACNGT	1 cut(s)	804
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	4 cut(s)	46, 100, 136, 755
TaqII	GACCGA	1 cut(s)	129
TasI	AATT	1 cut(s)	257
TatI	WGTACW	1 cut(s)	691
TauI	GCSGC	2 cut(s)	7, 902
TfiI	GAWTC	4 cut(s)	80, 209, 383, 685
Tru1I	TTAA	3 cut(s)	465, 680, 985
Tru9I	TTAA	3 cut(s)	465, 680, 985
TscAI	CASTG	5 cut(s)	96, 115, 348, 852, 893
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	6 cut(s)	275, 701, 797, 908, 911, 914
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	3 cut(s)	249, 875, 956
TspRI	CASTG	5 cut(s)	96, 115, 348, 852, 893
Van91I	CCANNNNNTGG	1 cut(s)	586
XceI	RCATGY	1 cut(s)	616
XcmI	CCANNNNNNNNNTGG	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	2 cut(s)	128, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.