Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004195

Physical Location & Seq

Genomic Coordinates Forward (+)

22404416 .. 22404940

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g19450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGCTAAGAGCTGAGTTGGAAGAGAAAGCAAAGCAGCTAGAAGTGTTTGGTGAAGAAAATCAGGGTTTAAAGAATCAGCTAAACGAAGCAGCATTAAATATTTTATCTGCCCAAGAAAAGGAAAAGGAACTGTCCTTGAAGTTAAGTCAGCTTGAGGAAGAGCTGGAAGCAAGTAAGGCAACTGCAGGTCAGTTGAATGCGAAGCTGCAGGCAACAGAAGGAGCAAAGGAAGCTCTGGAAGCAGAAATAAAGAAGATGAGAGTGCAGACAGAGCAGTGGAGAAAGGCAGCAGATGCTGCTGCTGTAGTACTTGCCGGGGGTGCGGAGATGAATGTATTTGAGACATCAGCTGGTGGCTACGCGGGCTTTGTGGGGTCACCTGCTGATGACTTGGACGATGGGTTCGGTAGTGGTAAAAGAAAGGGTTCCGGCATAAAAATGTTTGGTGACTTGTGGAAAAAGAAAGGCCAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0010817 GO:0016020 GO:0030427 GO:0032879 GO:0035838 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044463 GO:0044464 GO:0050789 GO:0051049 GO:0051286 GO:0065007 GO:0065008 GO:0071944 GO:0090404 GO:0090406 GO:0120025 GO:0120038 GO:2000012

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.04

Weight (kDa)

5.14

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78430
fragaria_vesca	FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600
malus_domestica	MD05G1208600.v1.1 MD10G1195100.v1.1 MD14G1047200.v1.1
prunus_persica	Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1
pyrus_communis	pycom05g19450 pycom10g16880
rosa_chinensis	RchiOBHm_Chr5g0027741
rosa_laevigata	RLG00000033039
rosa_multiflora	Rmu_sc0013615.1_g000004 Rmu_sc0021622.1_g000001 Rmu_sc0032705.1_g000002
rosa_roxburghii	Rroxscaffold_1G00051870
rosa_rugosa	Rorug05G0100400 Rorug05G0100500 Rorug05G0100600
rosa_samantha	Rh5AG194900 Rh5BG193200 Rh5CG213400 Rh5DG195200
rosa_wichuraiana	Rw5G017790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	388
Acc36I	ACCTGC	2 cut(s)	176, 388
AccII	CGCG	1 cut(s)	362
AciI	CCGC	2 cut(s)	323, 362
AfaI	GTAC	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	139, 196
AloI	GAACNNNNNNTCC	2 cut(s)	386, 418
AluBI	AGCT	8 cut(s)	11, 37, 79, 151, 163, 205, 233, 350
AluI	AGCT	8 cut(s)	11, 37, 79, 151, 163, 205, 233, 350
Alw26I	GTCTC	1 cut(s)	335
AlwNI	CAGNNNCTG	1 cut(s)	296
AoxI	GGCC	1 cut(s)	466
ApeKI	GCWGC	6 cut(s)	34, 89, 205, 287, 296, 299
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
Asp700I	GAANNNNTTC	1 cut(s)	424
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	3 cut(s)	62, 369, 458
BbvI	GCAGC	6 cut(s)	46, 101, 192, 283, 286, 299
BccI	CCATC	1 cut(s)	392
BcnI	CCSGG	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	3 cut(s)	183, 206, 303
BfuAI	ACCTGC	2 cut(s)	176, 388
BisI	GCNGC	6 cut(s)	35, 90, 206, 288, 297, 300
BlsI	GCNGC	6 cut(s)	36, 91, 207, 289, 298, 301
BmcAI	AGTACT	1 cut(s)	309
Bme1390I	CCNGG	1 cut(s)	316
BmiI	GGNNCC	1 cut(s)	427
BmrFI	CCNGG	1 cut(s)	316
BmsI	GCATC	1 cut(s)	283
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	315
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseXI	GCAGC	6 cut(s)	46, 101, 192, 283, 286, 299
BsgI	GTGCAG	1 cut(s)	284
Bsh1236I	CGCG	1 cut(s)	362
BshFI	GGCC	1 cut(s)	468
BsiSI	CCGG	2 cut(s)	315, 429
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	335
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	468
BspACI	CCGC	2 cut(s)	323, 362
BspANI	GGCC	1 cut(s)	468
BspCNI	CTCAG	1 cut(s)	4
BspFNI	CGCG	1 cut(s)	362
BspLI	GGNNCC	1 cut(s)	427
BspMAI	CTGCAG	2 cut(s)	187, 210
BspMI	ACCTGC	2 cut(s)	176, 388
BspQI	GCTCTTC	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	132
Bst6I	CTCTTC	2 cut(s)	15, 153
BstAPI	GCANNNNNTGC	2 cut(s)	293, 296
BstC8I	GCNNGC	2 cut(s)	210, 364
BstDEI	CTNAG	2 cut(s)	5, 12
BstEII	GGTNACC	1 cut(s)	375
BstFNI	CGCG	1 cut(s)	362
BstMAI	GTCTC	1 cut(s)	335
BstMWI	GCNNNNNNNGC	8 cut(s)	176, 230, 239, 271, 293, 296, 320, 363
BstPI	GGTNACC	1 cut(s)	375
BstSCI	CCNGG	1 cut(s)	314
BstSFI	CTRYAG	3 cut(s)	183, 206, 303
BstUI	CGCG	1 cut(s)	362
BstV1I	GCAGC	6 cut(s)	46, 101, 192, 283, 286, 299
BsuRI	GGCC	1 cut(s)	468
BtsI	GCAGTG	1 cut(s)	281
BtsIMutI	CAGTG	1 cut(s)	281
BveI	ACCTGC	2 cut(s)	176, 388
Cac8I	GCNNGC	2 cut(s)	210, 364
CaiI	CAGNNNCTG	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	308
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	2 cut(s)	5, 12
DraI	TTTAAA	1 cut(s)	69
Eam1104I	CTCTTC	2 cut(s)	15, 153
EarI	CTCTTC	2 cut(s)	15, 153
Eco91I	GGTNACC	1 cut(s)	375
EcoO65I	GGTNACC	1 cut(s)	375
FaiI	YATR	1 cut(s)	434
FauI	CCCGC	1 cut(s)	355
Fnu4HI	GCNGC	6 cut(s)	35, 90, 206, 288, 297, 300
Fsp4HI	GCNGC	6 cut(s)	35, 90, 206, 288, 297, 300
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	6 cut(s)	35, 90, 206, 288, 297, 300
HaeIII	GGCC	1 cut(s)	468
HapII	CCGG	2 cut(s)	315, 429
HinfI	GANTC	1 cut(s)	73
HpaII	CCGG	2 cut(s)	315, 429
HphI	GGTGA	3 cut(s)	62, 369, 458
Hpy188III	TCNNGA	1 cut(s)	236
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4V	TGCA	3 cut(s)	185, 208, 265
HpyF10VI	GCNNNNNNNGC	8 cut(s)	176, 230, 239, 271, 293, 296, 320, 363
HpyF3I	CTNAG	2 cut(s)	5, 12
LguI	GCTCTTC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	9 cut(s)	47, 149, 171, 194, 221, 328, 336, 393, 442
Lsp1109I	GCAGC	6 cut(s)	46, 101, 192, 283, 286, 299
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	2 cut(s)	375, 446
MboII	GAAGA	4 cut(s)	32, 65, 170, 265
MnlI	CCTC	1 cut(s)	148
MroXI	GAANNNNTTC	1 cut(s)	424
MseI	TTAA	3 cut(s)	68, 95, 143
MslI	CAYNNNNRTG	1 cut(s)	437
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	2 cut(s)	315, 429
MspR9I	CCNGG	1 cut(s)	316
Mva1269I	GAATGC	1 cut(s)	202
MvnI	CGCG	1 cut(s)	362
MwoI	GCNNNNNNNGC	8 cut(s)	176, 230, 239, 271, 293, 296, 320, 363
NciI	CCSGG	1 cut(s)	316
NlaIV	GGNNCC	1 cut(s)	427
NmuCI	GTSAC	2 cut(s)	375, 446
PaqCI	CACCTGC	1 cut(s)	388
PciSI	GCTCTTC	1 cut(s)	153
PctI	GAATGC	1 cut(s)	202
PdmI	GAANNNNTTC	1 cut(s)	424
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	6 cut(s)	36, 91, 207, 289, 298, 301
PspEI	GGTNACC	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	427
PstI	CTGCAG	2 cut(s)	187, 210
PstNI	CAGNNNCTG	1 cut(s)	296
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
RseI	CAYNNNNRTG	1 cut(s)	437
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	3 cut(s)	68, 95, 143
SatI	GCNGC	6 cut(s)	35, 90, 206, 288, 297, 300
ScaI	AGTACT	1 cut(s)	309
ScrFI	CCNGG	1 cut(s)	316
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	3 cut(s)	183, 206, 303
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SsiI	CCGC	2 cut(s)	323, 362
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	314
TaaI	ACNGT	1 cut(s)	132
TatI	WGTACW	1 cut(s)	307
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	3 cut(s)	68, 95, 143
Tru9I	TTAA	3 cut(s)	68, 95, 143
TscAI	CASTG	1 cut(s)	281
TseFI	GTSAC	2 cut(s)	375, 446
TseI	GCWGC	6 cut(s)	34, 89, 205, 287, 296, 299
Tsp45I	GTSAC	2 cut(s)	375, 446
TspDTI	ATGAA	1 cut(s)	344
TspRI	CASTG	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	424
XspI	CTAG	1 cut(s)	38
ZrmI	AGTACT	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.