Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032705.1

Orthogroup ID

OG0004195

Physical Location & Seq

Genomic Coordinates Forward (+)

1793 .. 2191

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032705.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atggccttgacgtcgagcgagtttgaagaagagctggaagcaagtaaagctaatgcagcacagttgagtgagaagctgaaagcaacagaagacgcaaaggaagcactggaagctgagatgaagaagatgagagtgcagacagagcagtggaaaaaggccgcagatgctgctgcagcaatacttgctgggggtgtggagatgaatgggaggatttccgagaggtgcggctccatggacaagcactttaatggagtatttgagcccccaggtggtggctatgctggttttttgggatcacctgctgctgatgatttggatgatggttttggtagtggaaaacgaaagggttcagggataaaaatgtttggtgacttgtggagaaagaagggccagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0010817 GO:0016020 GO:0030427 GO:0032879 GO:0035838 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044463 GO:0044464 GO:0050789 GO:0051049 GO:0051286 GO:0065007 GO:0065008 GO:0071944 GO:0090404 GO:0090406 GO:0120025 GO:0120038 GO:2000012

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

14.1

Weight (kDa)

5.54

Isoelectric Point (pI)

39.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78430
fragaria_vesca	FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600
malus_domestica	MD05G1208600.v1.1 MD10G1195100.v1.1 MD14G1047200.v1.1
prunus_persica	Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1
pyrus_communis	pycom05g19450 pycom10g16880
rosa_chinensis	RchiOBHm_Chr5g0027741
rosa_laevigata	RLG00000033039
rosa_multiflora	Rmu_sc0013615.1_g000004 Rmu_sc0021622.1_g000001 Rmu_sc0032705.1_g000002
rosa_roxburghii	Rroxscaffold_1G00051870
rosa_rugosa	Rorug05G0100400 Rorug05G0100500 Rorug05G0100600
rosa_samantha	Rh5AG194900 Rh5BG193200 Rh5CG213400 Rh5DG195200
rosa_wichuraiana	Rw5G017790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	307
AatII	GACGTC	1 cut(s)	14
Acc36I	ACCTGC	1 cut(s)	307
AccB7I	CCANNNNNTGG	1 cut(s)	272
AciI	CCGC	2 cut(s)	159, 225
AclWI	GGATC	1 cut(s)	301
AcyI	GRCGYC	1 cut(s)	11
AfiI	CCNNNNNNNGG	2 cut(s)	269, 272
AgsI	TTSAA	1 cut(s)	26
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	4 cut(s)	34, 50, 76, 113
AluI	AGCT	4 cut(s)	34, 50, 76, 113
AlwI	GGATC	1 cut(s)	301
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	3 cut(s)	3, 156, 388
ApeKI	GCWGC	5 cut(s)	56, 167, 170, 173, 302
Asp700I	GAANNNNTTC	1 cut(s)	346
AspS9I	GGNCC	1 cut(s)	388
AsuHPI	GGTGA	2 cut(s)	288, 380
BanII	GRGCYC	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	96
BbvI	GCAGC	5 cut(s)	68, 154, 157, 185, 289
BccI	CCATC	1 cut(s)	314
BciT130I	CCWGG	1 cut(s)	267
BfmI	CTRYAG	1 cut(s)	171
BfuAI	ACCTGC	1 cut(s)	307
BisI	GCNGC	7 cut(s)	57, 159, 168, 171, 174, 226, 303
BlsI	GCNGC	7 cut(s)	58, 160, 169, 172, 175, 227, 304
Bme1390I	CCNGG	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	388
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	267
BmsI	GCATC	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	231, 265
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 272
Bse1I	ACTGG	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	2 cut(s)	231, 265
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	2 cut(s)	269, 272
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	111
BseXI	GCAGC	5 cut(s)	68, 154, 157, 185, 289
BseYI	CCCAGC	1 cut(s)	185
BsgI	GTGCAG	1 cut(s)	155
BshFI	GGCC	3 cut(s)	5, 158, 390
BslI	CCNNNNNNNGG	2 cut(s)	269, 272
BsnI	GGCC	3 cut(s)	5, 158, 390
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	1 cut(s)	293
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	2 cut(s)	159, 225
BspANI	GGCC	3 cut(s)	5, 158, 390
BspCNI	CTCAG	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	229
BspMAI	CTGCAG	1 cut(s)	175
BspMI	ACCTGC	1 cut(s)	307
BspPI	GGATC	1 cut(s)	301
BspQI	GCTCTTC	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	111
BssECI	CCNNGG	2 cut(s)	231, 265
BssMI	GATC	1 cut(s)	293
BssNI	GRCGYC	1 cut(s)	11
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	63
Bst6I	CTCTTC	1 cut(s)	24
BstACI	GRCGYC	1 cut(s)	11
BstAPI	GCANNNNNTGC	2 cut(s)	167, 182
BstDEI	CTNAG	1 cut(s)	114
BstDSI	CCRYGG	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	1 cut(s)	296
BstMBI	GATC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	9 cut(s)	47, 56, 101, 110, 142, 164, 167, 173, 182
BstNI	CCWGG	1 cut(s)	267
BstSCI	CCNGG	1 cut(s)	265
BstSFI	CTRYAG	1 cut(s)	171
BstV1I	GCAGC	5 cut(s)	68, 154, 157, 185, 289
BstV2I	GAAGAC	1 cut(s)	96
BsuRI	GGCC	3 cut(s)	5, 158, 390
BtgI	CCRYGG	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	322
BtsI	GCAGTG	1 cut(s)	152
BtsIMutI	CAGTG	2 cut(s)	104, 152
BveI	ACCTGC	1 cut(s)	307
CaiI	CAGNNNCTG	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	388
CseI	GACGC	1 cut(s)	101
CviAII	CATG	1 cut(s)	232
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	1 cut(s)	295
DpnII	GATC	1 cut(s)	293
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	231
Eco24I	GRGCYC	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	231
EcoT38I	GRGCYC	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	1 cut(s)	235
FaiI	YATR	2 cut(s)	233, 279
FatI	CATG	1 cut(s)	231
Fnu4HI	GCNGC	7 cut(s)	57, 159, 168, 171, 174, 226, 303
FokI	GGATG	1 cut(s)	329
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	7 cut(s)	57, 159, 168, 171, 174, 226, 303
GluI	GCNGC	7 cut(s)	57, 159, 168, 171, 174, 226, 303
GsaI	CCCAGC	1 cut(s)	189
HaeIII	GGCC	3 cut(s)	5, 158, 390
HgaI	GACGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	235
HphI	GGTGA	2 cut(s)	288, 380
Hpy188I	TCNGA	1 cut(s)	217
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	379
HpyCH4III	ACNGT	1 cut(s)	63
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	3 cut(s)	56, 136, 173
HpyF10VI	GCNNNNNNNGC	9 cut(s)	47, 56, 101, 110, 142, 164, 167, 173, 182
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	11
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	293
LguI	GCTCTTC	1 cut(s)	24
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	8 cut(s)	20, 92, 171, 252, 267, 279, 312, 336
Lsp1109I	GCAGC	5 cut(s)	68, 154, 157, 185, 289
LweI	GCATC	1 cut(s)	154
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	1 cut(s)	295
MboI	GATC	1 cut(s)	293
MboII	GAAGA	5 cut(s)	38, 41, 101, 133, 136
MhlI	GDGCHC	1 cut(s)	264
MnlI	CCTC	2 cut(s)	201, 213
MroXI	GAANNNNTTC	1 cut(s)	346
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	246
MspR9I	CCNGG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	267
MwoI	GCNNNNNNNGC	9 cut(s)	47, 56, 101, 110, 142, 164, 167, 173, 182
NcoI	CCATGG	1 cut(s)	231
NdeII	GATC	1 cut(s)	293
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	368
PaqCI	CACCTGC	1 cut(s)	307
PciSI	GCTCTTC	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	346
PflMI	CCANNNNNTGG	1 cut(s)	272
PkrI	GCNGC	7 cut(s)	58, 160, 169, 172, 175, 227, 304
Psp6I	CCWGG	1 cut(s)	265
PspFI	CCCAGC	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	388
PstI	CTGCAG	1 cut(s)	175
PstNI	CAGNNNCTG	1 cut(s)	167
RseI	CAYNNNNRTG	1 cut(s)	246
SapI	GCTCTTC	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	7 cut(s)	57, 159, 168, 171, 174, 226, 303
Sau3AI	GATC	1 cut(s)	293
Sau96I	GGNCC	1 cut(s)	388
ScrFI	CCNGG	1 cut(s)	267
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	8 cut(s)	14, 36, 52, 78, 115, 224, 271, 301
SfaNI	GCATC	1 cut(s)	154
SfcI	CTRYAG	1 cut(s)	171
SmiMI	CAYNNNNRTG	1 cut(s)	246
SsiI	CCGC	2 cut(s)	159, 225
StyD4I	CCNGG	1 cut(s)	265
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	63
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	1 cut(s)	14
TauI	GCSGC	2 cut(s)	161, 228
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	2 cut(s)	111, 152
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	5 cut(s)	56, 167, 170, 173, 302
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	2 cut(s)	134, 215
TspRI	CASTG	2 cut(s)	111, 152
Van91I	CCANNNNNTGG	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	346
ZraI	GACGTC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.