Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004195

Physical Location & Seq

Genomic Coordinates Forward (+)

20091946 .. 20093446

Gene Structure 1501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g16880.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGCTGCGATCAAGGTGTTTATGTATATTCCTGAATCTTGTGGATTCAGTGGGCTCTGAAATGGTTCAAAGGCCGTCTCCTCGAGGCTCACATCAGCTCAGGACATCAAGCTCTGATTCAGATCCACTCCATCATCGACCAATAACTGACCGAAGTCCAAAGCTAGGAGTGGATCGCCGTTCCCCAAGAGGTACACAATCTGATCCACTAAACCAAAAGAAAATTGGAATGCGCCTTGCTGATTTGGAATCTCAGCTTGGGCAAGCACAAGAAGAGCTAAAGATACTGAAAGAGCAGTTGGCTTCAGCTGAGGCTGCAAAGAAAGAAGCACAAGAGAAACTGGAAAAGAAAATTAAGAAACGAGTTGTGACTTCTGAGCCAGCGAAGATCCATAAAGCGCATCCTACATTGGAAATTCAAGATTGTAACAAAACGGACAGTTGTTCCTCTGATGAAGTTCCAGTTGACATCCAAAAGGAAACTGATGTTTTTGAAGTCCCAGTAGAAAAAGTTACAGTTGAGCTGATGGTTGAAGCTAGTGAGACTGATCAGGTGGAAGATGAAACCAAACAAGTTGATAAATCAGATGAACCAACATCGATTTTGGAAGCAGAGAAACTTTCAGCCTTACGTGACCTAGCTTTGAAGAATGATGAGATAAACATGCTAAGAGCTGAGTTGGAAGAGAAGGCAAAGCAGTTAGAAGTGTCTGGTGAAGAAAGTCAGGGTGTAAAGAATCAGCTAAACGAAGCGGCATTAAATATTTTATCTGCCCAAGAAAAGGAGAAGGAAATGTCCTTGAAGTTAAGTCAGCTTGAAGAAGAGCTGGAAGTCAGTAAGGGAAATGCAGGTCAGTTGAACGAGAAGCTGCAAGCAACGGAAAGAGCAAAGGAAGCACTGGAAGCGGAGATGAAGAAGATGAGAGTGCAGACAGAGCAGTGGAGAAAGGCAGCAGATGCTGCTGCTGCTGTACTTGCCGGGGGTGTGGAGATAAATGGTAGAGTAATTGAGCCATCAACTGGTGGCTACACGGGCTTTGTGGGGTCACCAGCTGATGACTTGGACGATGGATTCGGTAGTGGTAAAAGAAAGGGCTCCGGCAAAAAAATGTTCGGTGACTTGTGGAAAAAGAAAGGCCAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0010817 GO:0016020 GO:0030427 GO:0032879 GO:0035838 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044463 GO:0044464 GO:0050789 GO:0051049 GO:0051286 GO:0065007 GO:0065008 GO:0071944 GO:0090404 GO:0090406 GO:0120025 GO:0120038 GO:2000012

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

382

Amino Acids

42.11

Weight (kDa)

5.37

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78430
fragaria_vesca	FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600
malus_domestica	MD05G1208600.v1.1 MD10G1195100.v1.1 MD14G1047200.v1.1
prunus_persica	Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1
pyrus_communis	pycom05g19450 pycom10g16880
rosa_chinensis	RchiOBHm_Chr5g0027741
rosa_laevigata	RLG00000033039
rosa_multiflora	Rmu_sc0013615.1_g000004 Rmu_sc0021622.1_g000001 Rmu_sc0032705.1_g000002
rosa_roxburghii	Rroxscaffold_1G00051870
rosa_rugosa	Rorug05G0100400 Rorug05G0100500 Rorug05G0100600
rosa_samantha	Rh5AG194900 Rh5BG193200 Rh5CG213400 Rh5DG195200
rosa_wichuraiana	Rw5G017790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	81
Acc36I	ACCTGC	1 cut(s)	839
AccB7I	CCANNNNNTGG	1 cut(s)	1019
AciI	CCGC	2 cut(s)	752, 905
AclWI	GGATC	4 cut(s)	116, 180, 197, 382
AcsI	RAATTY	1 cut(s)	414
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	2 cut(s)	193, 972
AfiI	CCNNNNNNNGG	3 cut(s)	164, 781, 1019
AgsI	TTSAA	8 cut(s)	68, 419, 494, 533, 646, 802, 818, 859
AjuI	GAANNNNNNNTTGG	4 cut(s)	240, 272, 281, 313
Alw26I	GTCTC	2 cut(s)	81, 536
AlwI	GGATC	4 cut(s)	116, 180, 197, 382
AlwNI	CAGNNNCTG	1 cut(s)	959
Ama87I	CYCGRG	1 cut(s)	81
AoxI	GGCC	2 cut(s)	71, 1135
ApeKI	GCWGC	7 cut(s)	4, 314, 868, 950, 959, 962, 965
ApoI	RAATTY	1 cut(s)	414
ArsI	GACNNNNNNTTYG	2 cut(s)	1055, 1087
Asp700I	GAANNNNTTC	1 cut(s)	63
AspLEI	GCGC	2 cut(s)	234, 400
AsuC2I	CCSGG	1 cut(s)	979
AsuHPI	GGTGA	3 cut(s)	725, 1038, 1127
AvaI	CYCGRG	1 cut(s)	81
BanII	GRGCYC	2 cut(s)	56, 1097
BbvCI	CCTCAGC	1 cut(s)	309
BbvI	GCAGC	6 cut(s)	301, 855, 946, 949, 952, 962
BccI	CCATC	4 cut(s)	138, 520, 1021, 1061
BceAI	ACGGC	2 cut(s)	58, 162
BclI	TGATCA	1 cut(s)	547
BcnI	CCSGG	1 cut(s)	979
BcoDI	GTCTC	2 cut(s)	81, 536
BfaI	CTAG	3 cut(s)	164, 537, 638
BfuAI	ACCTGC	1 cut(s)	839
BisI	GCNGC	8 cut(s)	5, 315, 753, 869, 951, 960, 963, 966
BlsI	GCNGC	8 cut(s)	6, 316, 754, 870, 952, 961, 964, 967
Bme1390I	CCNGG	1 cut(s)	979
BmeT110I	CYCGRG	1 cut(s)	81
BmiI	GGNNCC	1 cut(s)	1096
BmrFI	CCNGG	1 cut(s)	979
BmrI	ACTGGG	1 cut(s)	494
BmsI	GCATC	2 cut(s)	409, 946
BmuI	ACTGGG	1 cut(s)	494
BoxI	GACNNNNGTC	1 cut(s)	153
Bpu10I	CCTNAGC	2 cut(s)	98, 309
BpuMI	CCSGG	1 cut(s)	979
Bsa29I	ATCGAT	1 cut(s)	599
BsaAI	YACGTR	1 cut(s)	632
BsaBI	GATNNNNATC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	978
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 781, 1019
Bse1I	ACTGG	5 cut(s)	345, 461, 500, 903, 1024
Bse8I	GATNNNNATC	1 cut(s)	120
BseCI	ATCGAT	1 cut(s)	599
BseDI	CCNNGG	1 cut(s)	978
BseGI	GGATG	2 cut(s)	400, 468
BseJI	GATNNNNATC	1 cut(s)	120
BseLI	CCNNNNNNNGG	3 cut(s)	164, 781, 1019
BseMII	CTCAG	5 cut(s)	112, 266, 300, 366, 666
BseNI	ACTGG	5 cut(s)	345, 461, 500, 903, 1024
BseRI	GAGGAG	1 cut(s)	69
BseXI	GCAGC	6 cut(s)	301, 855, 946, 949, 952, 962
BsgI	GTGCAG	1 cut(s)	947
BshFI	GGCC	2 cut(s)	73, 1137
BshVI	ATCGAT	1 cut(s)	599
BsiHKCI	CYCGRG	1 cut(s)	81
BsiSI	CCGG	2 cut(s)	978, 1098
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	3 cut(s)	164, 781, 1019
BsmAI	GTCTC	2 cut(s)	81, 536
BsmBI	CGTCTC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	482
BsmI	GAATGC	1 cut(s)	234
BsnI	GGCC	2 cut(s)	73, 1137
BsoBI	CYCGRG	1 cut(s)	81
Bsp1286I	GDGCHC	2 cut(s)	56, 1097
Bsp143I	GATC	6 cut(s)	8, 121, 172, 202, 387, 547
BspACI	CCGC	2 cut(s)	752, 905
BspANI	GGCC	2 cut(s)	73, 1137
BspCNI	CTCAG	5 cut(s)	111, 265, 301, 367, 667
BspDI	ATCGAT	1 cut(s)	599
BspLI	GGNNCC	1 cut(s)	1096
BspMI	ACCTGC	1 cut(s)	839
BspPI	GGATC	4 cut(s)	116, 180, 197, 382
BspQI	GCTCTTC	2 cut(s)	267, 816
BsrI	ACTGG	5 cut(s)	345, 461, 500, 903, 1024
BssECI	CCNNGG	1 cut(s)	978
BssMI	GATC	6 cut(s)	8, 121, 172, 202, 387, 547
Bst4CI	ACNGT	2 cut(s)	440, 517
Bst6I	CTCTTC	3 cut(s)	267, 678, 816
BstAPI	GCANNNNNTGC	2 cut(s)	956, 959
BstBAI	YACGTR	1 cut(s)	632
BstC8I	GCNNGC	3 cut(s)	264, 381, 873
BstDEI	CTNAG	6 cut(s)	98, 252, 309, 375, 668, 675
BstEII	GGTNACC	1 cut(s)	1044
BstF5I	GGATG	2 cut(s)	400, 468
BstHHI	GCGC	2 cut(s)	234, 400
BstKTI	GATC	6 cut(s)	11, 124, 175, 205, 390, 550
BstMAI	GTCTC	2 cut(s)	81, 536
BstMBI	GATC	6 cut(s)	8, 121, 172, 202, 387, 547
BstMWI	GCNNNNNNNGC	9 cut(s)	314, 893, 902, 934, 956, 959, 965, 974, 1032
BstNSI	RCATGY	1 cut(s)	667
BstPAI	GACNNNNGTC	1 cut(s)	153
BstPI	GGTNACC	1 cut(s)	1044
BstSCI	CCNGG	1 cut(s)	977
BstV1I	GCAGC	6 cut(s)	301, 855, 946, 949, 952, 962
BstX2I	RGATCY	2 cut(s)	121, 387
BstYI	RGATCY	2 cut(s)	121, 387
Bsu15I	ATCGAT	1 cut(s)	599
BsuRI	GGCC	2 cut(s)	73, 1137
BsuTUI	ATCGAT	1 cut(s)	599
BtsCI	GGATG	2 cut(s)	400, 468
BtsI	GCAGTG	1 cut(s)	944
BtsIMutI	CAGTG	3 cut(s)	54, 896, 944
BveI	ACCTGC	1 cut(s)	839
Cac8I	GCNNGC	3 cut(s)	264, 381, 873
CaiI	CAGNNNCTG	1 cut(s)	959
CfoI	GCGC	2 cut(s)	234, 400
ClaI	ATCGAT	1 cut(s)	599
Csp6I	GTAC	2 cut(s)	192, 971
CviAII	CATG	1 cut(s)	664
CviQI	GTAC	2 cut(s)	192, 971
DdeI	CTNAG	6 cut(s)	98, 252, 309, 375, 668, 675
DpnI	GATC	6 cut(s)	10, 123, 174, 204, 389, 549
DpnII	GATC	6 cut(s)	8, 121, 172, 202, 387, 547
Eam1104I	CTCTTC	3 cut(s)	267, 678, 816
EarI	CTCTTC	3 cut(s)	267, 678, 816
Eco24I	GRGCYC	2 cut(s)	56, 1097
Eco57I	CTGAAG	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	81
Eco91I	GGTNACC	1 cut(s)	1044
EcoO65I	GGTNACC	1 cut(s)	1044
EcoT38I	GRGCYC	2 cut(s)	56, 1097
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	1 cut(s)	667
FaiI	YATR	4 cut(s)	22, 26, 393, 665
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	1 cut(s)	663
FbaI	TGATCA	1 cut(s)	547
Fnu4HI	GCNGC	8 cut(s)	5, 315, 753, 869, 951, 960, 963, 966
FokI	GGATG	2 cut(s)	387, 455
FriOI	GRGCYC	2 cut(s)	56, 1097
Fsp4HI	GCNGC	8 cut(s)	5, 315, 753, 869, 951, 960, 963, 966
FspBI	CTAG	3 cut(s)	164, 537, 638
GlaI	GCGC	2 cut(s)	233, 399
GluI	GCNGC	8 cut(s)	5, 315, 753, 869, 951, 960, 963, 966
HaeIII	GGCC	2 cut(s)	73, 1137
HapII	CCGG	2 cut(s)	978, 1098
HhaI	GCGC	2 cut(s)	234, 400
Hin1II	CATG	1 cut(s)	667
Hin6I	GCGC	2 cut(s)	232, 398
HinP1I	GCGC	2 cut(s)	232, 398
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HinfI	GANTC	6 cut(s)	34, 44, 116, 248, 736, 1071
HpaII	CCGG	2 cut(s)	978, 1098
HphI	GGTGA	3 cut(s)	725, 1038, 1127
Hpy166II	GTNNAC	2 cut(s)	194, 466
Hpy188I	TCNGA	7 cut(s)	58, 115, 121, 202, 376, 451, 586
Hpy188III	TCNNGA	3 cut(s)	31, 100, 419
Hpy8I	GTNNAC	2 cut(s)	194, 466
HpyAV	CCTTC	2 cut(s)	682, 781
HpyCH4III	ACNGT	2 cut(s)	440, 517
HpyCH4IV	ACGT	1 cut(s)	631
HpyCH4V	TGCA	4 cut(s)	317, 848, 871, 928
HpyF10VI	GCNNNNNNNGC	9 cut(s)	314, 893, 902, 934, 956, 959, 965, 974, 1032
HpyF3I	CTNAG	6 cut(s)	98, 252, 309, 375, 668, 675
HpySE526I	ACGT	1 cut(s)	631
Hsp92II	CATG	1 cut(s)	667
HspAI	GCGC	2 cut(s)	232, 398
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	6 cut(s)	8, 121, 172, 202, 387, 547
LguI	GCTCTTC	2 cut(s)	267, 816
LmnI	GCTCC	1 cut(s)	1100
Lsp1109I	GCAGC	6 cut(s)	301, 855, 946, 949, 952, 962
LweI	GCATC	2 cut(s)	409, 946
MaeI	CTAG	3 cut(s)	164, 537, 638
MaeII	ACGT	1 cut(s)	631
MaeIII	GTNAC	6 cut(s)	367, 425, 511, 632, 1044, 1115
MalI	GATC	6 cut(s)	10, 123, 174, 204, 389, 549
MboI	GATC	6 cut(s)	8, 121, 172, 202, 387, 547
MflI	RGATCY	2 cut(s)	121, 387
MhlI	GDGCHC	2 cut(s)	56, 1097
MluCI	AATT	4 cut(s)	222, 351, 414, 1005
MmeI	TCCRAC	1 cut(s)	660
MnlI	CCTC	5 cut(s)	77, 90, 182, 304, 457
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	3 cut(s)	354, 758, 806
MspA1I	CMGCKG	2 cut(s)	308, 1052
MspI	CCGG	2 cut(s)	978, 1098
MspR9I	CCNGG	1 cut(s)	979
Mva1269I	GAATGC	1 cut(s)	234
MwoI	GCNNNNNNNGC	9 cut(s)	314, 893, 902, 934, 956, 959, 965, 974, 1032
NciI	CCSGG	1 cut(s)	979
NdeII	GATC	6 cut(s)	8, 121, 172, 202, 387, 547
NlaIII	CATG	1 cut(s)	667
NlaIV	GGNNCC	1 cut(s)	1096
NmuCI	GTSAC	4 cut(s)	367, 632, 1044, 1115
NspI	RCATGY	1 cut(s)	667
PaeR7I	CTCGAG	1 cut(s)	81
PciSI	GCTCTTC	2 cut(s)	267, 816
PctI	GAATGC	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	6 cut(s)	34, 44, 116, 248, 736, 1071
PflMI	CCANNNNNTGG	1 cut(s)	1019
PkrI	GCNGC	8 cut(s)	6, 316, 754, 870, 952, 961, 964, 967
Ppu21I	YACGTR	1 cut(s)	632
PshAI	GACNNNNGTC	1 cut(s)	153
PspEI	GGTNACC	1 cut(s)	1044
PspN4I	GGNNCC	1 cut(s)	1096
PspXI	VCTCGAGB	1 cut(s)	81
PstNI	CAGNNNCTG	1 cut(s)	959
PsuI	RGATCY	2 cut(s)	121, 387
PvuII	CAGCTG	2 cut(s)	308, 1052
RsaI	GTAC	2 cut(s)	193, 972
RsaNI	GTAC	2 cut(s)	192, 971
SapI	GCTCTTC	2 cut(s)	267, 816
SaqAI	TTAA	3 cut(s)	354, 758, 806
SatI	GCNGC	8 cut(s)	5, 315, 753, 869, 951, 960, 963, 966
Sau3AI	GATC	6 cut(s)	8, 121, 172, 202, 387, 547
ScrFI	CCNGG	1 cut(s)	979
SduI	GDGCHC	2 cut(s)	56, 1097
SfaNI	GCATC	2 cut(s)	409, 946
Sfr274I	CTCGAG	1 cut(s)	81
SlaI	CTCGAG	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
Sse9I	AATT	4 cut(s)	222, 351, 414, 1005
SsiI	CCGC	2 cut(s)	752, 905
SspI	AATATT	1 cut(s)	763
SspMI	CTAG	3 cut(s)	164, 537, 638
StyD4I	CCNGG	1 cut(s)	977
TaaI	ACNGT	2 cut(s)	440, 517
TaiI	ACGT	1 cut(s)	634
TaqI	TCGA	3 cut(s)	82, 136, 599
TaqII	GACCGA	1 cut(s)	165
TasI	AATT	4 cut(s)	222, 351, 414, 1005
TatI	WGTACW	1 cut(s)	970
TauI	GCSGC	1 cut(s)	755
TfiI	GAWTC	6 cut(s)	34, 44, 116, 248, 736, 1071
Tru1I	TTAA	3 cut(s)	354, 758, 806
Tru9I	TTAA	3 cut(s)	354, 758, 806
TscAI	CASTG	3 cut(s)	54, 903, 944
TseFI	GTSAC	4 cut(s)	367, 632, 1044, 1115
TseI	GCWGC	7 cut(s)	4, 314, 868, 950, 959, 962, 965
Tsp45I	GTSAC	4 cut(s)	367, 632, 1044, 1115
TspDTI	ATGAA	4 cut(s)	468, 576, 603, 926
TspGWI	ACGGA	2 cut(s)	449, 893
TspRI	CASTG	3 cut(s)	54, 903, 944
Van91I	CCANNNNNTGG	1 cut(s)	1019
XapI	RAATTY	1 cut(s)	414
XceI	RCATGY	1 cut(s)	667
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221
XhoI	CTCGAG	1 cut(s)	81
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	3 cut(s)	164, 537, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.