Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004195

Physical Location & Seq

Genomic Coordinates Reverse (-)

10462309 .. 10465845

Gene Structure 3537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g16600.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGCCGCGATCAAGGGGATCTGAAGTGGTTCAAAAGCCAACTCTTCGAGGCTCACATAAGCTAAGGACTTCAAGCTCTGATTCAGAACCACTGCATCATCGACCAATCACTGACCGAAGTCCAAAGCTAGGAGATCGTCGTTCCCCAAGAGGTTCACAATCGGATCCACTGAACCAAAAGAAACTTGGAACCCGCCTTGCTGATTTAGAATCTCAACTTGGCCAAGCACAAGATGAGCTAAAGAGTCTAAAAGAACAGTTGGCTTCAGCTGAGGCTGCTAAAAAAGAAGCCCAAGAAAAGCTGGACAAGAAAGCTAAGAAACCAGTTGTGACTTCTGAGCCAGTGAAAATCAGTGAAACACATCCTCCCTCAGAAAGTGAAGATTCTAACAGAACAGACAGCTGTCCCTCAGATGACAACAGCCAAAGGGAAACTGATGTCTTTGAAGTCCCTGCAGAGAAAGTTTCAGCTGAGCCAAAGGTTGAAACTAATGAGACTGATCAGGTGGAAGAAGAAACCAAACCAATAGATATTTCAGCTGAACCACCATTGATTGTTGAGCCAGAGAAGTCACCCTTCCATGACTTGGCTTTGAAAAATGAAGAGATAGACATGCTAAAAGCCAAGTTGGAAGAGAAGGAAAATGAGGTAGAAGTATTTGGTCAAGAAAATGACAGTTTAAGAAACCAGCTAAAGGAAGCAGCTATGAATATCTCAACTGCTGAAGTGAAGGAAAAGGAAATGGCCTTGAAGTCGAGTAAGTTTGAAGAAGAGCTGGAAGCAAGTAAAGCTAATGCAGCTGAGTTGAGTGAGAAGCTGAAAGCAATAGAAGAAGTGAAGGAAGCACTGGAGGCTGAGATGAAGAAAATGAGAGTGCAGACAGAGCAGTGGAAAAAGGCCGCAGATGCAGCTGCAACAATACTTGCTGGGGGTGTGGAGATGAATGGGAGGATTTCTGAGAGGTGTGGCTCCATGGACAAGCACTTTGGTGGAGTGTTTGATCCCCCAGGTGGTGGCTATGCTGGTTTTGTAGGATCACCTGCTGCTGATGATTTGGATGATGGTTTTGGTAGTGGAAAACGAAAGGGTTCAGGGATAAAAATGTTTGGTGACTTGTGGAGAAAGAAGGGCCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0010817 GO:0016020 GO:0030427 GO:0032879 GO:0035838 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044463 GO:0044464 GO:0050789 GO:0051049 GO:0051286 GO:0065007 GO:0065008 GO:0071944 GO:0090404 GO:0090406 GO:0120025 GO:0120038 GO:2000012

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

380

Amino Acids

41.68

Weight (kDa)

5.22

Isoelectric Point (pI)

53.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78430
fragaria_vesca	FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600
malus_domestica	MD05G1208600.v1.1 MD10G1195100.v1.1 MD14G1047200.v1.1
prunus_persica	Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1
pyrus_communis	pycom05g19450 pycom10g16880
rosa_chinensis	RchiOBHm_Chr5g0027741
rosa_laevigata	RLG00000033039
rosa_multiflora	Rmu_sc0013615.1_g000004 Rmu_sc0021622.1_g000001 Rmu_sc0032705.1_g000002
rosa_roxburghii	Rroxscaffold_1G00051870
rosa_rugosa	Rorug05G0100400 Rorug05G0100500 Rorug05G0100600
rosa_samantha	Rh5AG194900 Rh5BG193200 Rh5CG213400 Rh5DG195200
rosa_wichuraiana	Rw5G017790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1048
Acc36I	ACCTGC	1 cut(s)	1048
AccB7I	CCANNNNNTGG	2 cut(s)	586, 1013
AccII	CGCG	1 cut(s)	7
AciI	CCGC	3 cut(s)	5, 193, 900
AclWI	GGATC	5 cut(s)	25, 158, 171, 995, 1042
AcoI	YGGCCR	1 cut(s)	220
AcuI	CTGAAG	3 cut(s)	42, 249, 744
AfiI	CCNNNNNNNGG	5 cut(s)	128, 586, 694, 1010, 1013
AgsI	TTSAA	7 cut(s)	32, 72, 446, 485, 595, 751, 767
AjnI	CCWGG	1 cut(s)	1006
AjuI	GAANNNNNNNTTGG	4 cut(s)	201, 233, 517, 549
AleI	CACNNNNGTG	1 cut(s)	987
Alw26I	GTCTC	1 cut(s)	488
AlwI	GGATC	5 cut(s)	25, 158, 171, 995, 1042
AoxI	GGCC	4 cut(s)	220, 744, 897, 1129
ApeKI	GCWGC	6 cut(s)	275, 701, 797, 908, 911, 1043
ArsI	GACNNNNNNTTYG	2 cut(s)	968, 1000
Asp700I	GAANNNNTTC	2 cut(s)	27, 1087
AspS9I	GGNCC	1 cut(s)	1129
AsuHPI	GGTGA	3 cut(s)	564, 1029, 1121
BalI	TGGCCA	1 cut(s)	222
BamHI	GGATCC	1 cut(s)	163
BbvCI	CCTCAGC	1 cut(s)	270
BbvI	GCAGC	6 cut(s)	262, 713, 809, 898, 920, 1030
BccI	CCATC	1 cut(s)	1055
BciT130I	CCWGG	1 cut(s)	1008
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	1 cut(s)	488
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	453
BfuAI	ACCTGC	1 cut(s)	1048
BisI	GCNGC	8 cut(s)	5, 276, 702, 798, 900, 909, 912, 1044
BlpI	GCTNAGC	1 cut(s)	471
BlsI	GCNGC	8 cut(s)	6, 277, 703, 799, 901, 910, 913, 1045
Bme1390I	CCNGG	1 cut(s)	1008
BmgT120I	GGNCC	1 cut(s)	1129
BmiI	GGNNCC	3 cut(s)	165, 190, 970
BmrFI	CCNGG	1 cut(s)	1008
BmsI	GCATC	2 cut(s)	103, 895
BoxI	GACNNNNGTC	2 cut(s)	117, 402
BpmI	CTGGAG	1 cut(s)	869
Bpu10I	CCTNAGC	2 cut(s)	62, 270
Bpu1102I	GCTNAGC	1 cut(s)	471
BsaJI	CCNNGG	2 cut(s)	972, 1006
BsaXI	ACNNNNNCTCC	2 cut(s)	349, 379
Bsc4I	CCNNNNNNNGG	5 cut(s)	128, 586, 694, 1010, 1013
Bse1I	ACTGG	3 cut(s)	323, 341, 852
BseBI	CCWGG	1 cut(s)	1008
BseDI	CCNNGG	2 cut(s)	972, 1006
BseGI	GGATG	2 cut(s)	361, 1063
BseLI	CCNNNNNNNGG	5 cut(s)	128, 586, 694, 1010, 1013
BseMII	CTCAG	8 cut(s)	261, 327, 384, 423, 462, 792, 846, 948
BseNI	ACTGG	3 cut(s)	323, 341, 852
BseXI	GCAGC	6 cut(s)	262, 713, 809, 898, 920, 1030
BseYI	CCCAGC	1 cut(s)	926
BsgI	GTGCAG	1 cut(s)	896
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	4 cut(s)	222, 746, 899, 1131
BslFI	GGGAC	2 cut(s)	390, 434
BslI	CCNNNNNNNGG	5 cut(s)	128, 586, 694, 1010, 1013
BsmAI	GTCTC	1 cut(s)	488
BsmFI	GGGAC	2 cut(s)	390, 434
BsnI	GGCC	4 cut(s)	222, 746, 899, 1131
Bsp143I	GATC	7 cut(s)	8, 17, 133, 163, 499, 1000, 1034
Bsp1720I	GCTNAGC	1 cut(s)	471
Bsp19I	CCATGG	1 cut(s)	972
BspACI	CCGC	3 cut(s)	5, 193, 900
BspANI	GGCC	4 cut(s)	222, 746, 899, 1131
BspCNI	CTCAG	8 cut(s)	262, 328, 383, 422, 463, 793, 847, 949
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	3 cut(s)	165, 190, 970
BspMAI	CTGCAG	1 cut(s)	457
BspMI	ACCTGC	1 cut(s)	1048
BspPI	GGATC	5 cut(s)	25, 158, 171, 995, 1042
BspQI	GCTCTTC	1 cut(s)	765
BsrI	ACTGG	3 cut(s)	323, 341, 852
BssECI	CCNNGG	2 cut(s)	972, 1006
BssMI	GATC	7 cut(s)	8, 17, 133, 163, 499, 1000, 1034
BssT1I	CCWWGG	1 cut(s)	972
Bst2UI	CCWGG	1 cut(s)	1008
Bst4CI	ACNGT	2 cut(s)	258, 677
Bst6I	CTCTTC	4 cut(s)	48, 597, 627, 765
BstDSI	CCRYGG	1 cut(s)	972
BstF5I	GGATG	2 cut(s)	361, 1063
BstFNI	CGCG	1 cut(s)	7
BstKTI	GATC	7 cut(s)	11, 20, 136, 166, 502, 1003, 1037
BstMAI	GTCTC	1 cut(s)	488
BstMBI	GATC	7 cut(s)	8, 17, 133, 163, 499, 1000, 1034
BstMWI	GCNNNNNNNGC	7 cut(s)	275, 788, 797, 851, 883, 905, 908
BstNI	CCWGG	1 cut(s)	1008
BstNSI	RCATGY	1 cut(s)	616
BstPAI	GACNNNNGTC	2 cut(s)	117, 402
BstSCI	CCNGG	1 cut(s)	1006
BstSFI	CTRYAG	1 cut(s)	453
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	6 cut(s)	262, 713, 809, 898, 920, 1030
BstX2I	RGATCY	2 cut(s)	17, 163
BstYI	RGATCY	2 cut(s)	17, 163
BsuRI	GGCC	4 cut(s)	222, 746, 899, 1131
BtgI	CCRYGG	1 cut(s)	972
BtsCI	GGATG	2 cut(s)	361, 1063
BtsI	GCAGTG	2 cut(s)	89, 893
BtsIMutI	CAGTG	7 cut(s)	89, 108, 167, 348, 358, 845, 893
BveI	ACCTGC	1 cut(s)	1048
Cfr13I	GGNCC	1 cut(s)	1129
CviAII	CATG	3 cut(s)	581, 613, 973
DpnI	GATC	7 cut(s)	10, 19, 135, 165, 501, 1002, 1036
DpnII	GATC	7 cut(s)	8, 17, 133, 163, 499, 1000, 1034
EaeI	YGGCCR	1 cut(s)	220
Eam1104I	CTCTTC	4 cut(s)	48, 597, 627, 765
EarI	CTCTTC	4 cut(s)	48, 597, 627, 765
Eco130I	CCWWGG	1 cut(s)	972
Eco57I	CTGAAG	3 cut(s)	42, 249, 744
EcoRII	CCWGG	1 cut(s)	1006
EcoT14I	CCWWGG	1 cut(s)	972
ErhI	CCWWGG	1 cut(s)	972
FaeI	CATG	3 cut(s)	584, 616, 976
FaiI	YATR	6 cut(s)	57, 582, 614, 707, 974, 1020
FalI	AAGNNNNNCTT	2 cut(s)	560, 592
FaqI	GGGAC	2 cut(s)	390, 434
FatI	CATG	3 cut(s)	580, 612, 972
FauI	CCCGC	1 cut(s)	200
FbaI	TGATCA	1 cut(s)	499
Fnu4HI	GCNGC	8 cut(s)	5, 276, 702, 798, 900, 909, 912, 1044
FokI	GGATG	2 cut(s)	348, 1070
Fsp4HI	GCNGC	8 cut(s)	5, 276, 702, 798, 900, 909, 912, 1044
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	8 cut(s)	5, 276, 702, 798, 900, 909, 912, 1044
GsaI	CCCAGC	1 cut(s)	930
GsuI	CTGGAG	1 cut(s)	869
HaeIII	GGCC	4 cut(s)	222, 746, 899, 1131
Hin1II	CATG	3 cut(s)	584, 616, 976
HinfI	GANTC	4 cut(s)	80, 209, 244, 383
HphI	GGTGA	3 cut(s)	564, 1029, 1121
Hpy166II	GTNNAC	1 cut(s)	155
Hpy188I	TCNGA	8 cut(s)	22, 79, 85, 163, 337, 373, 412, 958
Hpy188III	TCNNGA	1 cut(s)	665
Hpy8I	GTNNAC	1 cut(s)	155
Hpy99I	CGWCG	1 cut(s)	141
HpyAV	CCTTC	5 cut(s)	586, 631, 724, 832, 1120
HpyCH4III	ACNGT	2 cut(s)	258, 677
HpyCH4V	TGCA	6 cut(s)	94, 455, 797, 877, 908, 914
HpyF10VI	GCNNNNNNNGC	7 cut(s)	275, 788, 797, 851, 883, 905, 908
Hsp92II	CATG	3 cut(s)	584, 616, 976
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	7 cut(s)	8, 17, 133, 163, 499, 1000, 1034
LguI	GCTCTTC	1 cut(s)	765
LmnI	GCTCC	1 cut(s)	974
Lsp1109I	GCAGC	6 cut(s)	262, 713, 809, 898, 920, 1030
LweI	GCATC	2 cut(s)	103, 895
MaeI	CTAG	1 cut(s)	128
MaeIII	GTNAC	3 cut(s)	328, 570, 1109
MalI	GATC	7 cut(s)	10, 19, 135, 165, 501, 1002, 1036
MboI	GATC	7 cut(s)	8, 17, 133, 163, 499, 1000, 1034
MflI	RGATCY	2 cut(s)	17, 163
MlsI	TGGCCA	1 cut(s)	222
MluNI	TGGCCA	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	253
MmeI	TCCRAC	1 cut(s)	609
Mox20I	TGGCCA	1 cut(s)	222
MroXI	GAANNNNTTC	2 cut(s)	27, 1087
MscI	TGGCCA	1 cut(s)	222
MseI	TTAA	1 cut(s)	680
MslI	CAYNNNNRTG	1 cut(s)	987
Msp20I	TGGCCA	1 cut(s)	222
MspA1I	CMGCKG	6 cut(s)	269, 402, 470, 539, 800, 911
MspR9I	CCNGG	1 cut(s)	1008
MvaI	CCWGG	1 cut(s)	1008
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	7 cut(s)	275, 788, 797, 851, 883, 905, 908
NcoI	CCATGG	1 cut(s)	972
NdeII	GATC	7 cut(s)	8, 17, 133, 163, 499, 1000, 1034
NlaIII	CATG	3 cut(s)	584, 616, 976
NlaIV	GGNNCC	3 cut(s)	165, 190, 970
NmuCI	GTSAC	3 cut(s)	328, 570, 1109
NspI	RCATGY	1 cut(s)	616
OliI	CACNNNNGTG	1 cut(s)	987
PaqCI	CACCTGC	1 cut(s)	1048
PciSI	GCTCTTC	1 cut(s)	765
PdmI	GAANNNNTTC	2 cut(s)	27, 1087
PfeI	GAWTC	3 cut(s)	80, 209, 383
PflMI	CCANNNNNTGG	2 cut(s)	586, 1013
PkrI	GCNGC	8 cut(s)	6, 277, 703, 799, 901, 910, 913, 1045
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
PshAI	GACNNNNGTC	2 cut(s)	117, 402
Psp6I	CCWGG	1 cut(s)	1006
PspFI	CCCAGC	1 cut(s)	926
PspGI	CCWGG	1 cut(s)	1006
PspN4I	GGNNCC	3 cut(s)	165, 190, 970
PspPI	GGNCC	1 cut(s)	1129
PstI	CTGCAG	1 cut(s)	457
PsuI	RGATCY	2 cut(s)	17, 163
PvuII	CAGCTG	6 cut(s)	269, 402, 470, 539, 800, 911
RseI	CAYNNNNRTG	1 cut(s)	987
SapI	GCTCTTC	1 cut(s)	765
SaqAI	TTAA	1 cut(s)	680
SatI	GCNGC	8 cut(s)	5, 276, 702, 798, 900, 909, 912, 1044
Sau3AI	GATC	7 cut(s)	8, 17, 133, 163, 499, 1000, 1034
Sau96I	GGNCC	1 cut(s)	1129
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	1 cut(s)	1008
SfaNI	GCATC	2 cut(s)	103, 895
SfcI	CTRYAG	1 cut(s)	453
SmiMI	CAYNNNNRTG	1 cut(s)	987
SsiI	CCGC	3 cut(s)	5, 193, 900
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	1006
StyI	CCWWGG	1 cut(s)	972
TaaI	ACNGT	2 cut(s)	258, 677
TaqI	TCGA	3 cut(s)	46, 100, 755
TaqII	GACCGA	1 cut(s)	129
TauI	GCSGC	2 cut(s)	7, 902
TfiI	GAWTC	3 cut(s)	80, 209, 383
Tru1I	TTAA	1 cut(s)	680
Tru9I	TTAA	1 cut(s)	680
TscAI	CASTG	7 cut(s)	96, 115, 174, 348, 358, 852, 893
TseFI	GTSAC	3 cut(s)	328, 570, 1109
TseI	GCWGC	6 cut(s)	275, 701, 797, 908, 911, 1043
Tsp45I	GTSAC	3 cut(s)	328, 570, 1109
TspDTI	ATGAA	4 cut(s)	615, 722, 875, 956
TspRI	CASTG	7 cut(s)	96, 115, 174, 348, 358, 852, 893
Van91I	CCANNNNNTGG	2 cut(s)	586, 1013
XceI	RCATGY	1 cut(s)	616
XcmI	CCANNNNNNNNNTGG	1 cut(s)	182
XmnI	GAANNNNTTC	2 cut(s)	27, 1087
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.