Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004195

Physical Location & Seq

Genomic Coordinates Forward (+)

72638288 .. 72640942

Gene Structure 2655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00051870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGCCTGGATTTGATAGTTTGGTACTACATAGAATACATTGTGGGGAAGGTGCCAAGAGGGTTGCACTGTCCCAGAAGCACGCTAGGGGATCTGAAGTGGTTCAAAAGCCAACTCTTCGAGGTTCACATAAGCTGAGGACTTCAAGCTCTGATTCAGATCCACTGCATCATCGACCAATCACTGACCGAAGTCCAAAGTTAGGAGATCGACGTTCCCCAAGAGGTTCACAATCGGATCCACTAAGCCAAAAAAAACTTGGAACCCGCCTTGCTGATTTAGAATCTCAACTTGGCCAAGCACAAGATGAGCTAAAGAGTCTAAAAGAACAATTGGCTTCAGCTGAAGCTGCAAAGAAAGAAGCCCAAGAAAAGCTGGACAAGAAAGCTAAGAAACCAGTTGTGACTTCAGGGCCAGTGAAAGTCCGCGAAACACATCCTCCATCGGAAAGTGAAGAATCTAACAAAACAGATAGCTGTCTCTCGGATGACAACAGCCAAAGGGAAACTGATGTCTTTGAAGTCCCTGCAGAAAAAGTTAAGGCTGAGACAAAGGTTGAGCCTAGCAAGACTAATCAGGTGGAAGAAGAAACCAAACCAATAGATATTTCAGCTGAACCACCATTGGTTTTGGAGCCAGAGAAGTCCGCCTTCCATGACTTGGCTTTGAAAAATGAAGAGATAGACATGCTAAATGCCAAGTTGGAAGAGAAGGAAAAAGAGGTAGAGGTGTTTGGTCAAGAAAATCAGAGTTTAAAGAATCAAGTACAGGAAGCAGCTACAAACATCTCAACTGCTGAAGCAAAGGAAAAGGAAATGGCCTTGAAGTCGAGCAAGTTTGAAGAAGAGCTGGAAGCAAGTAAAGTTAATGCAGCACAGTTGAGTGAGAAGCTGAAAGCAACAGAAGATGCAAAGGAAGCACTGGAAGCTGAGATGAAGAAGATGAGAGTGCAGACAGAGCAGTGGAAAAAGGCTGCAGATGCTGCTGCAGCAATACTTGCTGGGGGTGTGGAGATGAATGGGAGGATTTCCGAGAGGTGTGGCTCCATGGACAAGCACTTTAATGGAGTATTTGAGCCCCCGGGTGGTGGCTATGCTGGTTTTGTGGGATCACCTGTTGCTGATGATTTGGATGATGGTTTTGGTAGTGGAAAACGAAAGGGTTCAGGGATAAAAATGTTTGGTGACTTGTGGAGAAAGAAGGGCCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0010817 GO:0016020 GO:0030427 GO:0032879 GO:0035838 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044463 GO:0044464 GO:0050789 GO:0051049 GO:0051286 GO:0065007 GO:0065008 GO:0071944 GO:0090404 GO:0090406 GO:0120025 GO:0120038 GO:2000012

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

403

Amino Acids

44.13

Weight (kDa)

5.99

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78430
fragaria_vesca	FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600 FvH4_3g16600
malus_domestica	MD05G1208600.v1.1 MD10G1195100.v1.1 MD14G1047200.v1.1
prunus_persica	Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1 Prupe.4G148800_v2.0.a1
pyrus_communis	pycom05g19450 pycom10g16880
rosa_chinensis	RchiOBHm_Chr5g0027741
rosa_laevigata	RLG00000033039
rosa_multiflora	Rmu_sc0013615.1_g000004 Rmu_sc0021622.1_g000001 Rmu_sc0032705.1_g000002
rosa_roxburghii	Rroxscaffold_1G00051870
rosa_rugosa	Rorug05G0100400 Rorug05G0100500 Rorug05G0100600
rosa_samantha	Rh5AG194900 Rh5BG193200 Rh5CG213400 Rh5DG195200
rosa_wichuraiana	Rw5G017790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	50
AccB7I	CCANNNNNTGG	1 cut(s)	658
AccII	CGCG	1 cut(s)	426
AciI	CCGC	3 cut(s)	265, 424, 645
AclWI	GGATC	5 cut(s)	97, 152, 230, 243, 1114
AcoI	YGGCCR	1 cut(s)	292
AcuI	CTGAAG	5 cut(s)	114, 321, 363, 390, 816
AfaI	GTAC	2 cut(s)	24, 765
AfiI	CCNNNNNNNGG	4 cut(s)	200, 658, 1082, 1085
AgsI	TTSAA	6 cut(s)	104, 144, 518, 667, 823, 839
AjnI	CCWGG	1 cut(s)	4
AjuI	GAANNNNNNNTTGG	4 cut(s)	273, 305, 589, 621
Alw26I	GTCTC	2 cut(s)	482, 539
AlwI	GGATC	5 cut(s)	97, 152, 230, 243, 1114
AlwNI	CAGNNNCTG	1 cut(s)	980
Ama87I	CYCGRG	1 cut(s)	1078
AoxI	GGCC	4 cut(s)	292, 410, 816, 1201
ApeKI	GCWGC	7 cut(s)	347, 773, 869, 971, 980, 983, 986
Asp700I	GAANNNNTTC	2 cut(s)	99, 1159
AspS9I	GGNCC	2 cut(s)	410, 1201
AsuC2I	CCSGG	2 cut(s)	1079, 1080
AsuHPI	GGTGA	2 cut(s)	1101, 1193
AvaI	CYCGRG	1 cut(s)	1078
BalI	TGGCCA	1 cut(s)	294
BamHI	GGATCC	1 cut(s)	235
BanI	GGYRCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	1077
BbvCI	CCTCAGC	1 cut(s)	134
BbvI	GCAGC	7 cut(s)	334, 785, 881, 958, 967, 970, 998
BccI	CCATC	2 cut(s)	448, 1127
BciT130I	CCWGG	1 cut(s)	6
BcnI	CCSGG	2 cut(s)	1079, 1080
BcoDI	GTCTC	2 cut(s)	482, 539
BfaI	CTAG	2 cut(s)	84, 561
BfmI	CTRYAG	3 cut(s)	525, 972, 984
BisI	GCNGC	7 cut(s)	348, 774, 870, 972, 981, 984, 987
BlsI	GCNGC	7 cut(s)	349, 775, 871, 973, 982, 985, 988
Bme1390I	CCNGG	3 cut(s)	6, 1079, 1080
BmeT110I	CYCGRG	1 cut(s)	1078
BmgT120I	GGNCC	2 cut(s)	410, 1201
BmiI	GGNNCC	5 cut(s)	52, 237, 262, 633, 1042
BmrFI	CCNGG	3 cut(s)	6, 1079, 1080
BmsI	GCATC	3 cut(s)	175, 895, 967
BoxI	GACNNNNGTC	1 cut(s)	189
Bpu10I	CCTNAGC	1 cut(s)	134
BpuMI	CCSGG	2 cut(s)	1079, 1080
BsaBI	GATNNNNATC	1 cut(s)	156
BsaJI	CCNNGG	3 cut(s)	1044, 1077, 1078
BsaXI	ACNNNNNCTCC	2 cut(s)	421, 451
Bsc4I	CCNNNNNNNGG	4 cut(s)	200, 658, 1082, 1085
Bse1I	ACTGG	3 cut(s)	395, 413, 924
Bse8I	GATNNNNATC	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	3 cut(s)	1044, 1077, 1078
BseGI	GGATG	3 cut(s)	433, 490, 1135
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	4 cut(s)	200, 658, 1082, 1085
BseMII	CTCAG	3 cut(s)	125, 534, 918
BseNI	ACTGG	3 cut(s)	395, 413, 924
BseXI	GCAGC	7 cut(s)	334, 785, 881, 958, 967, 970, 998
BseYI	CCCAGC	1 cut(s)	998
BsgI	GTGCAG	1 cut(s)	968
Bsh1236I	CGCG	1 cut(s)	426
BshFI	GGCC	4 cut(s)	294, 412, 818, 1203
BshNI	GGYRCC	1 cut(s)	50
BsiHKCI	CYCGRG	1 cut(s)	1078
BsiSI	CCGG	1 cut(s)	1079
BslFI	GGGAC	2 cut(s)	55, 506
BslI	CCNNNNNNNGG	4 cut(s)	200, 658, 1082, 1085
BsmAI	GTCTC	2 cut(s)	482, 539
BsmFI	GGGAC	2 cut(s)	55, 506
BsnI	GGCC	4 cut(s)	294, 412, 818, 1203
BsoBI	CYCGRG	1 cut(s)	1078
Bsp1286I	GDGCHC	1 cut(s)	1077
Bsp143I	GATC	5 cut(s)	89, 157, 205, 235, 1106
Bsp19I	CCATGG	1 cut(s)	1044
BspACI	CCGC	3 cut(s)	265, 424, 645
BspANI	GGCC	4 cut(s)	294, 412, 818, 1203
BspCNI	CTCAG	3 cut(s)	126, 535, 919
BspFNI	CGCG	1 cut(s)	426
BspLI	GGNNCC	5 cut(s)	52, 237, 262, 633, 1042
BspMAI	CTGCAG	3 cut(s)	529, 976, 988
BspPI	GGATC	5 cut(s)	97, 152, 230, 243, 1114
BspQI	GCTCTTC	1 cut(s)	837
BspT107I	GGYRCC	1 cut(s)	50
BsrI	ACTGG	3 cut(s)	395, 413, 924
BssECI	CCNNGG	3 cut(s)	1044, 1077, 1078
BssMI	GATC	5 cut(s)	89, 157, 205, 235, 1106
BssT1I	CCWWGG	1 cut(s)	1044
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	69, 876
Bst6I	CTCTTC	4 cut(s)	120, 669, 699, 837
BstAPI	GCANNNNNTGC	2 cut(s)	980, 995
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	5 cut(s)	134, 242, 387, 543, 927
BstDSI	CCRYGG	1 cut(s)	1044
BstF5I	GGATG	3 cut(s)	433, 490, 1135
BstFNI	CGCG	1 cut(s)	426
BstKTI	GATC	5 cut(s)	92, 160, 208, 238, 1109
BstMAI	GTCTC	2 cut(s)	482, 539
BstMBI	GATC	5 cut(s)	89, 157, 205, 235, 1106
BstMWI	GCNNNNNNNGC	8 cut(s)	347, 914, 923, 955, 977, 980, 986, 995
BstNI	CCWGG	1 cut(s)	6
BstNSI	RCATGY	1 cut(s)	688
BstPAI	GACNNNNGTC	1 cut(s)	189
BstSCI	CCNGG	3 cut(s)	4, 1077, 1078
BstSFI	CTRYAG	3 cut(s)	525, 972, 984
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	7 cut(s)	334, 785, 881, 958, 967, 970, 998
BstX2I	RGATCY	3 cut(s)	89, 157, 235
BstYI	RGATCY	3 cut(s)	89, 157, 235
BsuRI	GGCC	4 cut(s)	294, 412, 818, 1203
BtgI	CCRYGG	1 cut(s)	1044
BtsCI	GGATG	3 cut(s)	433, 490, 1135
BtsI	GCAGTG	2 cut(s)	161, 965
BtsIMutI	CAGTG	6 cut(s)	65, 161, 180, 420, 917, 965
Cac8I	GCNNGC	1 cut(s)	81
CaiI	CAGNNNCTG	1 cut(s)	980
Cfr13I	GGNCC	2 cut(s)	410, 1201
Cfr9I	CCCGGG	1 cut(s)	1078
Csp6I	GTAC	2 cut(s)	23, 764
CviAII	CATG	3 cut(s)	653, 685, 1045
CviQI	GTAC	2 cut(s)	23, 764
DdeI	CTNAG	5 cut(s)	134, 242, 387, 543, 927
DpnI	GATC	5 cut(s)	91, 159, 207, 237, 1108
DpnII	GATC	5 cut(s)	89, 157, 205, 235, 1106
DraI	TTTAAA	1 cut(s)	753
EaeI	YGGCCR	1 cut(s)	292
Eam1104I	CTCTTC	4 cut(s)	120, 669, 699, 837
EarI	CTCTTC	4 cut(s)	120, 669, 699, 837
EciI	GGCGGA	1 cut(s)	634
Eco130I	CCWWGG	1 cut(s)	1044
Eco24I	GRGCYC	1 cut(s)	1077
Eco57I	CTGAAG	5 cut(s)	114, 321, 363, 390, 816
Eco88I	CYCGRG	1 cut(s)	1078
EcoRII	CCWGG	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	1044
EcoT38I	GRGCYC	1 cut(s)	1077
ErhI	CCWWGG	1 cut(s)	1044
FaeI	CATG	3 cut(s)	656, 688, 1048
FaiI	YATR	6 cut(s)	30, 129, 654, 686, 1046, 1092
FalI	AAGNNNNNCTT	2 cut(s)	632, 664
FaqI	GGGAC	2 cut(s)	55, 506
FatI	CATG	3 cut(s)	652, 684, 1044
FauI	CCCGC	1 cut(s)	272
Fnu4HI	GCNGC	7 cut(s)	348, 774, 870, 972, 981, 984, 987
FokI	GGATG	3 cut(s)	420, 497, 1142
FriOI	GRGCYC	1 cut(s)	1077
Fsp4HI	GCNGC	7 cut(s)	348, 774, 870, 972, 981, 984, 987
FspBI	CTAG	2 cut(s)	84, 561
GluI	GCNGC	7 cut(s)	348, 774, 870, 972, 981, 984, 987
GsaI	CCCAGC	1 cut(s)	1002
HaeIII	GGCC	4 cut(s)	294, 412, 818, 1203
HapII	CCGG	1 cut(s)	1079
Hin1II	CATG	3 cut(s)	656, 688, 1048
HinfI	GANTC	5 cut(s)	152, 281, 316, 455, 757
HpaII	CCGG	1 cut(s)	1079
HphI	GGTGA	2 cut(s)	1101, 1193
Hpy166II	GTNNAC	2 cut(s)	125, 227
Hpy188I	TCNGA	8 cut(s)	94, 151, 157, 235, 445, 484, 747, 1030
Hpy188III	TCNNGA	1 cut(s)	737
Hpy8I	GTNNAC	2 cut(s)	125, 227
Hpy99I	CGWCG	1 cut(s)	213
HpyAV	CCTTC	4 cut(s)	41, 658, 703, 1192
HpyCH4III	ACNGT	2 cut(s)	69, 876
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	9 cut(s)	65, 166, 350, 527, 869, 908, 949, 974, 986
HpyF10VI	GCNNNNNNNGC	8 cut(s)	347, 914, 923, 955, 977, 980, 986, 995
HpyF3I	CTNAG	5 cut(s)	134, 242, 387, 543, 927
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	3 cut(s)	656, 688, 1048
Kzo9I	GATC	5 cut(s)	89, 157, 205, 235, 1106
LguI	GCTCTTC	1 cut(s)	837
LmnI	GCTCC	2 cut(s)	631, 1046
Lsp1109I	GCAGC	7 cut(s)	334, 785, 881, 958, 967, 970, 998
LweI	GCATC	3 cut(s)	175, 895, 967
MaeI	CTAG	2 cut(s)	84, 561
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	2 cut(s)	400, 1181
MalI	GATC	5 cut(s)	91, 159, 207, 237, 1108
MboI	GATC	5 cut(s)	89, 157, 205, 235, 1106
MfeI	CAATTG	1 cut(s)	329
MflI	RGATCY	3 cut(s)	89, 157, 235
MhlI	GDGCHC	1 cut(s)	1077
MlsI	TGGCCA	1 cut(s)	294
MluCI	AATT	1 cut(s)	329
MluNI	TGGCCA	1 cut(s)	294
MlyI	GAGTC	1 cut(s)	325
MmeI	TCCRAC	1 cut(s)	681
MnlI	CCTC	9 cut(s)	51, 113, 129, 215, 447, 712, 718, 1014, 1026
Mox20I	TGGCCA	1 cut(s)	294
MroXI	GAANNNNTTC	2 cut(s)	99, 1159
MscI	TGGCCA	1 cut(s)	294
MseI	TTAA	4 cut(s)	537, 752, 864, 1059
MslI	CAYNNNNRTG	1 cut(s)	1059
Msp20I	TGGCCA	1 cut(s)	294
MspA1I	CMGCKG	2 cut(s)	341, 611
MspI	CCGG	1 cut(s)	1079
MspR9I	CCNGG	3 cut(s)	6, 1079, 1080
MunI	CAATTG	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	6
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	8 cut(s)	347, 914, 923, 955, 977, 980, 986, 995
NciI	CCSGG	2 cut(s)	1079, 1080
NcoI	CCATGG	1 cut(s)	1044
NdeII	GATC	5 cut(s)	89, 157, 205, 235, 1106
NlaIII	CATG	3 cut(s)	656, 688, 1048
NlaIV	GGNNCC	5 cut(s)	52, 237, 262, 633, 1042
NmuCI	GTSAC	2 cut(s)	400, 1181
NspI	RCATGY	1 cut(s)	688
PciSI	GCTCTTC	1 cut(s)	837
PdmI	GAANNNNTTC	2 cut(s)	99, 1159
PfeI	GAWTC	4 cut(s)	152, 281, 455, 757
PflMI	CCANNNNNTGG	1 cut(s)	658
PkrI	GCNGC	7 cut(s)	349, 775, 871, 973, 982, 985, 988
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
PshAI	GACNNNNGTC	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	4
PspFI	CCCAGC	1 cut(s)	998
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	5 cut(s)	52, 237, 262, 633, 1042
PspPI	GGNCC	2 cut(s)	410, 1201
PstI	CTGCAG	3 cut(s)	529, 976, 988
PstNI	CAGNNNCTG	1 cut(s)	980
PsuI	RGATCY	3 cut(s)	89, 157, 235
PvuII	CAGCTG	2 cut(s)	341, 611
RsaI	GTAC	2 cut(s)	24, 765
RsaNI	GTAC	2 cut(s)	23, 764
RseI	CAYNNNNRTG	1 cut(s)	1059
SapI	GCTCTTC	1 cut(s)	837
SaqAI	TTAA	4 cut(s)	537, 752, 864, 1059
SatI	GCNGC	7 cut(s)	348, 774, 870, 972, 981, 984, 987
Sau3AI	GATC	5 cut(s)	89, 157, 205, 235, 1106
Sau96I	GGNCC	2 cut(s)	410, 1201
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	3 cut(s)	6, 1079, 1080
SduI	GDGCHC	1 cut(s)	1077
SfaNI	GCATC	3 cut(s)	175, 895, 967
SfcI	CTRYAG	3 cut(s)	525, 972, 984
SmaI	CCCGGG	1 cut(s)	1080
SmiMI	CAYNNNNRTG	1 cut(s)	1059
Sse9I	AATT	1 cut(s)	329
SsiI	CCGC	3 cut(s)	265, 424, 645
SspMI	CTAG	2 cut(s)	84, 561
StyD4I	CCNGG	3 cut(s)	4, 1077, 1078
StyI	CCWWGG	1 cut(s)	1044
TaaI	ACNGT	2 cut(s)	69, 876
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	4 cut(s)	118, 172, 208, 827
TaqII	GACCGA	1 cut(s)	201
TasI	AATT	1 cut(s)	329
TatI	WGTACW	1 cut(s)	763
TfiI	GAWTC	4 cut(s)	152, 281, 455, 757
Tru1I	TTAA	4 cut(s)	537, 752, 864, 1059
Tru9I	TTAA	4 cut(s)	537, 752, 864, 1059
TscAI	CASTG	6 cut(s)	72, 168, 187, 420, 924, 965
TseFI	GTSAC	2 cut(s)	400, 1181
TseI	GCWGC	7 cut(s)	347, 773, 869, 971, 980, 983, 986
Tsp45I	GTSAC	2 cut(s)	400, 1181
TspDTI	ATGAA	3 cut(s)	687, 947, 1028
TspMI	CCCGGG	1 cut(s)	1078
TspRI	CASTG	6 cut(s)	72, 168, 187, 420, 924, 965
Van91I	CCANNNNNTGG	1 cut(s)	658
XceI	RCATGY	1 cut(s)	688
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XmaI	CCCGGG	1 cut(s)	1078
XmnI	GAANNNNTTC	2 cut(s)	99, 1159
XspI	CTAG	2 cut(s)	84, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.