AT1G78930
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006549
Physical Location & Seq
Reverse (-)
29677904 .. 29680757
2854 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78930.1

Sequence Viewer

Length: 1776 bp
ATGGAGCTTTTACATACGTCCTGCAATTTCGAAACCCTAACCTTGATTTCTCCTCCTTTAAAATCCTGTAACTTTAGTTCCAGCTCTCTCTTCTTCTCTCCTCGTCGCGTAACCTTGTTTCCAGCTTACCATAGTGGCCGCGTCACTGTTTCCGCCTCGTTACAGCACGGAGATTCGAATTTTAGCTCTAATTCTTCGCAGACAAATCAGGAAGCGCAGAATTCAATTGCTGGGTTTCTCCGACGAGACACTGGACTCTCAGAGGCCGATTCAGATTTCATTTCTTCAAATTGTCCTAAATACACGCGAATGATCGTAGAGGGTGTTAGGGATTTGGAGGAATGGAATTCGTGGAAAGGGAGTGGAGAATCTGAGAGAGTTGAGGAGGGTTTAGGGTTTAAGGAGAAAGTGATTTATATGGTGAAACAAAAGGGTGATGGTGGCAAAGTTGCCTTTTTGGAGAGTCTTGGTTTGAGTTTGTCTTCTGCTATGTATTTGGCTCATTACGTCTCCTCTGAATCGCTTCCGATACTTCTCGATAAGGTTAAGTACCTCAAGGAAATATTCTTTTCTGGCAGTGATGAGAAAGGTCTGGTTGGAAAGTATGCAAGACGAATGATGCTCTACTTATCCATTCCTATCGATGAAGATGTGCAGCAAACTCTTTCCTTTTTCGAAAAGATTGAAGCAAGGCGTGGAGGCTTGGATATGCTGGGCTCTGTAGATGCATCATTTAGATTTTTACTCGAGTCATTCCCTCGGCTTCTTCTACTTTCAGAAGAAAATGATATGAAGCCTATGGTCGAGTTTCTTGAAAGCATTGGTATTCCGAAATATTGCTTGGGAAAGGTACTTCTTTTGTACCCTCCCATCATGCTCGGAAAAACTGAGGAGATCAAACGAAGGGTAGCCACAGCTATGGAGAAGGTAAGTGTAGTGAACAAGGATTCTGGAAAATTGTTGCTGAAGTATCCGTGGATTCTCTCACCAAGCATACAAGAGAACTATTCTCACATCGGCTCATTTTTTTACAGTGAATCGGTGCTCAAAATGGATATTGACCACGCCATTAGGAGATGGCCTTTGCTTCTCGGTTGCTCAGCCAGCAATATGGAGATGATGGTGAAGGAATTTGATAAATTAGGTGTTAGAGATAAAAGAATGGGGAAGGTTATACCCAAGATGCCTCAGCTTTTGTTATGTAAACCCCAAGAATTTCTTAAGGTTGTTTGCTTTTTGGAAGATTTGGGGTTTCAAAAAGAAATTGTAGGTCAAATACTGTGTCGATGTCCTGAAATATTTGGCTGCAGCATTGAGAAAACCCTGCAGAAAAAGCTCATCTTTCTCACTCGTTTTGGTGTTTCCACTACACATTTTCCCCGAATCATAAAGAAATACCCTGAATTTCTCATATACGACGCAGACAAAACAGTACTTCCACGGCTAAAGTACTTAATGGAGATTGGGATATCAGAGAGAGAGATTGCCTTCATGATTCGCAAATTCTCACCGATCTTAGGATATAGCATCGACAAAGTGTTGAGACCGAAGTTTGAATTTCTGGTGAACAGCATGGAGAAGCCGGTAAGAGAGGTAATAGAATACCCAAGGTACTTCAGTTACTCGCTAGAGAAAAGGATAAAACCGCGGTTTAGGGTACTCAAAGGGAGGAACATAGAATGTACATTACAGGAAATGTTAGGCAAAAACGATGAAGAGTTTGCTGCTGATTTCTTGGGTTTAGGAGAGCTTCAAACTCACAGTGAAATCTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

591

Amino Acids

67.56

Weight (kDa)

8.43

Isoelectric Point (pI)

49.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 268 - 575 2.7e-104 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 108, 141, 307, 1648
AciI CCGC 4 cut(s) 139, 153, 1646, 1648
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 8 cut(s) 178, 220, 346, 1130, 1214, 1403, 1502, 1556
AcuI CTGAAG 2 cut(s) 986, 1600
AfaI GTAC 8 cut(s) 551, 852, 863, 1434, 1451, 1613, 1659, 1684
AfiI CCNNNNNNNGG 1 cut(s) 1517
AflII CTTAAG 1 cut(s) 1220
AgsI TTSAA 7 cut(s) 225, 288, 686, 815, 1256, 1556, 1754
AjuI GAANNNNNNNTTGG 2 cut(s) 824, 856
AluBI AGCT 8 cut(s) 7, 84, 125, 186, 917, 1192, 1336, 1750
AluI AGCT 8 cut(s) 7, 84, 125, 186, 917, 1192, 1336, 1750
Alw21I GWGCWC 1 cut(s) 1047
Alw26I GTCTC 3 cut(s) 240, 514, 1537
Ama87I CYCGRG 1 cut(s) 746
AoxI GGCC 3 cut(s) 136, 264, 1079
ApeKI GCWGC 4 cut(s) 655, 1305, 1308, 1724
ApoI RAATTY 8 cut(s) 178, 220, 346, 1130, 1214, 1403, 1502, 1556
ArsI GACNNNNNNTTYG 2 cut(s) 1267, 1299
Asp700I GAANNNNTTC 1 cut(s) 522
AspLEI GCGC 1 cut(s) 217
AsuHPI GGTGA 6 cut(s) 433, 446, 978, 1135, 1500, 1576
AsuII TTCGAA 3 cut(s) 30, 176, 675
AvaI CYCGRG 1 cut(s) 746
BaeI ACNNNNGTAYC 2 cut(s) 1603, 1636
BanII GRGCYC 1 cut(s) 719
BbsI GAAGAC 1 cut(s) 474
Bbv12I GWGCWC 1 cut(s) 1047
BbvCI CCTCAGC 1 cut(s) 1188
BbvI GCAGC 4 cut(s) 667, 1292, 1320, 1711
BccI CCATC 4 cut(s) 431, 878, 1071, 1114
BceAI ACGGC 1 cut(s) 1457
BciVI GTATCC 1 cut(s) 981
BcoDI GTCTC 3 cut(s) 240, 514, 1537
BfaI CTAG 1 cut(s) 1628
BfmI CTRYAG 3 cut(s) 720, 1306, 1325
BfrI CTTAAG 1 cut(s) 1220
BfuI GTATCC 1 cut(s) 981
BisI GCNGC 5 cut(s) 139, 656, 1306, 1309, 1725
BlpI GCTNAGC 1 cut(s) 1099
BlsI GCNGC 5 cut(s) 140, 657, 1307, 1310, 1726
BmcAI AGTACT 2 cut(s) 1434, 1451
BmeT110I CYCGRG 1 cut(s) 746
BmsI GCATC 5 cut(s) 609, 715, 737, 1173, 1536
BpiI GAAGAC 1 cut(s) 474
Bpu10I CCTNAGC 1 cut(s) 1188
Bpu1102I GCTNAGC 1 cut(s) 1099
Bpu14I TTCGAA 3 cut(s) 30, 176, 675
BpuEI CTTGAG 1 cut(s) 539
Bsa29I ATCGAT 1 cut(s) 642
BsaI GGTCTC 1 cut(s) 1537
BsaJI CCNNGG 5 cut(s) 758, 974, 1439, 1607, 1646
Bsc4I CCNNNNNNNGG 1 cut(s) 1517
Bse118I RCCGGY 1 cut(s) 1582
Bse1I ACTGG 1 cut(s) 256
BseCI ATCGAT 1 cut(s) 642
BseDI CCNNGG 5 cut(s) 758, 974, 1439, 1607, 1646
BseLI CCNNNNNNNGG 1 cut(s) 1517
BseMII CTCAG 5 cut(s) 273, 363, 879, 1113, 1202
BseNI ACTGG 1 cut(s) 256
BseRI GAGGAG 5 cut(s) 42, 90, 398, 502, 905
BseXI GCAGC 4 cut(s) 667, 1292, 1320, 1711
BseYI CCCAGC 2 cut(s) 230, 712
BsgI GTGCAG 1 cut(s) 674
Bsh1236I CGCG 4 cut(s) 108, 141, 307, 1648
BshFI GGCC 3 cut(s) 138, 266, 1081
BshVI ATCGAT 1 cut(s) 642
BsiHKAI GWGCWC 1 cut(s) 1047
BsiHKCI CYCGRG 1 cut(s) 746
BsiSI CCGG 1 cut(s) 1583
BslI CCNNNNNNNGG 1 cut(s) 1517
BsmAI GTCTC 3 cut(s) 240, 514, 1537
BsmBI CGTCTC 1 cut(s) 514
BsnI GGCC 3 cut(s) 138, 266, 1081
Bso31I GGTCTC 1 cut(s) 1537
BsoBI CYCGRG 1 cut(s) 746
Bsp119I TTCGAA 3 cut(s) 30, 176, 675
Bsp1286I GDGCHC 2 cut(s) 719, 1047
Bsp1407I TGTACA 1 cut(s) 1682
Bsp143I GATC 3 cut(s) 312, 894, 1512
Bsp1720I GCTNAGC 1 cut(s) 1099
BspACI CCGC 4 cut(s) 139, 153, 1646, 1648
BspANI GGCC 3 cut(s) 138, 266, 1081
BspCNI CTCAG 5 cut(s) 272, 364, 880, 1112, 1201
BspDI ATCGAT 1 cut(s) 642
BspFNI CGCG 4 cut(s) 108, 141, 307, 1648
BspHI TCATGA 1 cut(s) 1491
BspMAI CTGCAG 2 cut(s) 1310, 1329
BspT104I TTCGAA 3 cut(s) 30, 176, 675
BspTI CTTAAG 1 cut(s) 1220
BspTNI GGTCTC 1 cut(s) 1537
BsrFI RCCGGY 1 cut(s) 1582
BsrGI TGTACA 1 cut(s) 1682
BsrI ACTGG 1 cut(s) 256
BssAI RCCGGY 1 cut(s) 1582
BssECI CCNNGG 5 cut(s) 758, 974, 1439, 1607, 1646
BssMI GATC 3 cut(s) 312, 894, 1512
BssT1I CCWWGG 1 cut(s) 1607
Bst4CI ACNGT 5 cut(s) 148, 1034, 1281, 1432, 1763
Bst6I CTCTTC 2 cut(s) 95, 1710
BstAFI CTTAAG 1 cut(s) 1220
BstAUI TGTACA 1 cut(s) 1682
BstBI TTCGAA 3 cut(s) 30, 176, 675
BstC8I GCNNGC 1 cut(s) 1105
BstDEI CTNAG 6 cut(s) 259, 372, 888, 1099, 1188, 1516
BstDSI CCRYGG 3 cut(s) 974, 1439, 1646
BstFNI CGCG 4 cut(s) 108, 141, 307, 1648
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 3 cut(s) 315, 897, 1515
BstMAI GTCTC 3 cut(s) 240, 514, 1537
BstMBI GATC 3 cut(s) 312, 894, 1512
BstMWI GCNNNNNNNGC 2 cut(s) 1104, 1333
BstSFI CTRYAG 3 cut(s) 720, 1306, 1325
BstUI CGCG 4 cut(s) 108, 141, 307, 1648
BstV1I GCAGC 4 cut(s) 667, 1292, 1320, 1711
BstV2I GAAGAC 1 cut(s) 474
BstXI CCANNNNNNTGG 2 cut(s) 919, 1111
Bsu15I ATCGAT 1 cut(s) 642
BsuI GTATCC 1 cut(s) 981
BsuRI GGCC 3 cut(s) 138, 266, 1081
BsuTUI ATCGAT 1 cut(s) 642
BtgI CCRYGG 3 cut(s) 974, 1439, 1646
BtsI GCAGTG 1 cut(s) 583
BtsIMutI CAGTG 5 cut(s) 144, 249, 583, 1039, 1768
Cac8I GCNNGC 1 cut(s) 1105
CciI TCATGA 1 cut(s) 1491
CfoI GCGC 1 cut(s) 217
Cfr10I RCCGGY 1 cut(s) 1582
Cfr42I CCGCGG 1 cut(s) 1649
ClaI ATCGAT 1 cut(s) 642
CseI GACGC 2 cut(s) 130, 1427
Csp6I GTAC 8 cut(s) 550, 851, 862, 1433, 1450, 1612, 1658, 1683
CviAII CATG 3 cut(s) 874, 1492, 1573
CviQI GTAC 8 cut(s) 550, 851, 862, 1433, 1450, 1612, 1658, 1683
DdeI CTNAG 6 cut(s) 259, 372, 888, 1099, 1188, 1516
DpnI GATC 3 cut(s) 314, 896, 1514
DpnII GATC 3 cut(s) 312, 894, 1512
DraI TTTAAA 1 cut(s) 60
EaeI YGGCCR 1 cut(s) 136
Eam1104I CTCTTC 2 cut(s) 95, 1710
EarI CTCTTC 2 cut(s) 95, 1710
EciI GGCGGA 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 1607
Eco24I GRGCYC 1 cut(s) 719
Eco31I GGTCTC 1 cut(s) 1537
Eco32I GATATC 1 cut(s) 1470
Eco57I CTGAAG 2 cut(s) 986, 1600
Eco88I CYCGRG 1 cut(s) 746
EcoRI GAATTC 2 cut(s) 220, 346
EcoRV GATATC 1 cut(s) 1470
EcoT14I CCWWGG 1 cut(s) 1607
EcoT22I ATGCAT 1 cut(s) 730
EcoT38I GRGCYC 1 cut(s) 719
ErhI CCWWGG 1 cut(s) 1607
Esp3I CGTCTC 1 cut(s) 514
FaeI CATG 3 cut(s) 877, 1495, 1576
FalI AAGNNNNNCTT 4 cut(s) 1203, 1235, 1325, 1357
FatI CATG 3 cut(s) 873, 1491, 1572
Fnu4HI GCNGC 5 cut(s) 139, 656, 1306, 1309, 1725
FriOI GRGCYC 1 cut(s) 719
Fsp4HI GCNGC 5 cut(s) 139, 656, 1306, 1309, 1725
FspBI CTAG 1 cut(s) 1628
GlaI GCGC 1 cut(s) 216
GluI GCNGC 5 cut(s) 139, 656, 1306, 1309, 1725
GsaI CCCAGC 2 cut(s) 234, 716
HaeIII GGCC 3 cut(s) 138, 266, 1081
HapII CCGG 1 cut(s) 1583
HgaI GACGC 2 cut(s) 130, 1427
HhaI GCGC 1 cut(s) 217
Hin1II CATG 3 cut(s) 877, 1495, 1576
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HpaII CCGG 1 cut(s) 1583
HphI GGTGA 6 cut(s) 433, 446, 978, 1135, 1500, 1576
Hpy166II GTNNAC 3 cut(s) 940, 1205, 1567
Hpy188III TCNNGA 6 cut(s) 209, 536, 812, 951, 1292, 1492
Hpy8I GTNNAC 3 cut(s) 940, 1205, 1567
Hpy99I CGWCG 3 cut(s) 108, 246, 1421
HpyAV CCTTC 5 cut(s) 897, 919, 1120, 1162, 1498
HpyCH4III ACNGT 5 cut(s) 148, 1034, 1281, 1432, 1763
HpyCH4IV ACGT 2 cut(s) 17, 507
HpyCH4V TGCA 6 cut(s) 24, 608, 655, 728, 1308, 1327
HpyF10VI GCNNNNNNNGC 2 cut(s) 1104, 1333
HpyF3I CTNAG 6 cut(s) 259, 372, 888, 1099, 1188, 1516
HpySE526I ACGT 2 cut(s) 17, 507
Hsp92II CATG 3 cut(s) 877, 1495, 1576
HspAI GCGC 1 cut(s) 215
KspI CCGCGG 1 cut(s) 1649
Kzo9I GATC 3 cut(s) 312, 894, 1512
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 4 cut(s) 667, 1292, 1320, 1711
LweI GCATC 5 cut(s) 609, 715, 737, 1173, 1536
MaeI CTAG 1 cut(s) 1628
MaeII ACGT 2 cut(s) 17, 507
MaeIII GTNAC 5 cut(s) 68, 109, 142, 159, 1619
MalI GATC 3 cut(s) 314, 896, 1514
MboI GATC 3 cut(s) 312, 894, 1512
MfeI CAATTG 1 cut(s) 225
MhlI GDGCHC 2 cut(s) 719, 1047
MlyI GAGTC 3 cut(s) 249, 472, 758
MmeI TCCRAC 2 cut(s) 265, 577
Mph1103I ATGCAT 1 cut(s) 730
MroXI GAANNNNTTC 1 cut(s) 522
MseI TTAA 5 cut(s) 59, 399, 546, 1221, 1454
MslI CAYNNNNRTG 2 cut(s) 308, 917
MspA1I CMGCKG 1 cut(s) 1648
MspCI CTTAAG 1 cut(s) 1220
MspI CCGG 1 cut(s) 1583
MunI CAATTG 1 cut(s) 225
MvnI CGCG 4 cut(s) 108, 141, 307, 1648
MwoI GCNNNNNNNGC 2 cut(s) 1104, 1333
NdeII GATC 3 cut(s) 312, 894, 1512
NlaIII CATG 3 cut(s) 877, 1495, 1576
NmeAIII GCCGAG 1 cut(s) 739
NmuCI GTSAC 1 cut(s) 142
NsiI ATGCAT 1 cut(s) 730
NspV TTCGAA 3 cut(s) 30, 176, 675
PaeR7I CTCGAG 1 cut(s) 746
PagI TCATGA 1 cut(s) 1491
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 9 cut(s) 173, 269, 368, 518, 947, 979, 1037, 1383, 1495
PkrI GCNGC 5 cut(s) 140, 657, 1307, 1310, 1726
PleI GAGTC 3 cut(s) 249, 471, 757
PpsI GAGTC 3 cut(s) 249, 471, 757
PspFI CCCAGC 2 cut(s) 230, 712
PspXI VCTCGAGB 1 cut(s) 746
PsrI GAACNNNNNNTAC 2 cut(s) 61, 93
PstI CTGCAG 2 cut(s) 1310, 1329
RsaI GTAC 8 cut(s) 551, 852, 863, 1434, 1451, 1613, 1659, 1684
RsaNI GTAC 8 cut(s) 550, 851, 862, 1433, 1450, 1612, 1658, 1683
RseI CAYNNNNRTG 2 cut(s) 308, 917
SacII CCGCGG 1 cut(s) 1649
SaqAI TTAA 5 cut(s) 59, 399, 546, 1221, 1454
SatI GCNGC 5 cut(s) 139, 656, 1306, 1309, 1725
Sau3AI GATC 3 cut(s) 312, 894, 1512
ScaI AGTACT 2 cut(s) 1434, 1451
SchI GAGTC 3 cut(s) 249, 472, 758
SduI GDGCHC 2 cut(s) 719, 1047
SfaNI GCATC 5 cut(s) 609, 715, 737, 1173, 1536
SfcI CTRYAG 3 cut(s) 720, 1306, 1325
Sfr274I CTCGAG 1 cut(s) 746
Sfr303I CCGCGG 1 cut(s) 1649
SfuI TTCGAA 3 cut(s) 30, 176, 675
SgrBI CCGCGG 1 cut(s) 1649
SlaI CTCGAG 1 cut(s) 746
SmiMI CAYNNNNRTG 2 cut(s) 308, 917
SmlI CTYRAG 3 cut(s) 554, 746, 1220
SmoI CTYRAG 3 cut(s) 554, 746, 1220
SsiI CCGC 4 cut(s) 139, 153, 1646, 1648
SspI AATATT 3 cut(s) 564, 836, 1299
SspMI CTAG 1 cut(s) 1628
StyI CCWWGG 1 cut(s) 1607
TaaI ACNGT 5 cut(s) 148, 1034, 1281, 1432, 1763
TaiI ACGT 2 cut(s) 20, 510
TaqI TCGA 9 cut(s) 30, 176, 537, 642, 675, 747, 804, 1285, 1530
TaqII GACCGA 1 cut(s) 1561
TatI WGTACW 3 cut(s) 1432, 1449, 1682
TauI GCSGC 1 cut(s) 141
TfiI GAWTC 9 cut(s) 173, 269, 368, 518, 947, 979, 1037, 1383, 1495
Tru1I TTAA 5 cut(s) 59, 399, 546, 1221, 1454
Tru9I TTAA 5 cut(s) 59, 399, 546, 1221, 1454
TscAI CASTG 5 cut(s) 151, 256, 583, 1039, 1768
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 4 cut(s) 655, 1305, 1308, 1724
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 5 cut(s) 268, 660, 806, 1480, 1728
TspGWI ACGGA 2 cut(s) 183, 963
TspRI CASTG 5 cut(s) 151, 256, 583, 1039, 1768
Vha464I CTTAAG 1 cut(s) 1220
XapI RAATTY 8 cut(s) 178, 220, 346, 1130, 1214, 1403, 1502, 1556
XhoI CTCGAG 1 cut(s) 746
XmnI GAANNNNTTC 1 cut(s) 522
XspI CTAG 1 cut(s) 1628
ZrmI AGTACT 2 cut(s) 1434, 1451
Zsp2I ATGCAT 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.