FvH4_6g36600
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006549
Physical Location & Seq
Forward (+)
28804820 .. 28809560
4741 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36600.t1

Sequence Viewer

Length: 1806 bp
ATGTCCTCCCCCAAATTCCTCTCAATCCCCACAACCCTCACCTTAACAATCAACTTATCCTCATCCCTAAACCCACCCAAAACCCCATCCTTCTTCCCAAACCCCACACTCACTCTCAAACTCCACCTTACCCAAAACCCCAAGAACCCATTTTTCCACACACCCACCAAAACCCATCTCCACCTTCACCGTCCCCTGCTCGCCGGACCACCCAGCAGCCCTGCTCCCCCACCGGAGCACTCACCGGAGCAAGTCTTGGCTGCCCAAGAAGCTATCTTGGAGCTTCTTCGAGAGTCTGGGGTCTCTGAGGAGGAGGCAGTGTTTGTTTCGTTGAACTCGCCGAGATATATGAGGATGTTGGTGGATGGGGTGGAGGAGTTGGATGAGATTGGGGTGTGGAGAGAGCAGTTGGTTGGGTTTAAAGAGAAGGTGAAGTATTTGGCTAAGGAGAAAGGTGACAATGGAAAGGTTGCGTTTTTGGAGAGTGTGGTTGGGTTGAGTCTGTCTCAGGCGATGAATATTGCTAGGCATTCGTCGGCGGAGACGTTACTTGGGCTCATTAAGAAGGTTAAGTATGTGAAGGAAATATTCTTTTCTGGCAGTAACGATGGGGGGCTCATTGGAAAGAATGCTCGTCGTATGATGGTGCACCTATCAATTCCTATTGATGAAGACCTGCAACAAACCTTATCCTTCTTTGAAAAGATTGCGGCAAGGCGTGGAGGCCTGGACATGCTGGGTATTGAGGATGCTACTTTCCGTTATTTGATTGAATCATTTCCACGTCTTCTATTGCTGTCCTTGGAGCCTCACATGACCCTTGTGGTTGAATATCTTGAAAATATCGGAGTCCGCAGAGAAAGCATGAGAACCATATTTTCGTTATTTCCACCAGTTATATTTTGGAACATTAGGGTCGTTAGAGCGAGAGTGAGTGCTTTTAAGGAGTTTGGTCTGGAGGATAAAGATGTTGGTTCAATGTTGATTAAATATCCATGGATTCTATCTACAAGCATTCACAAAAACTTCAAAGAGGTTCTTACTTTCTTTGATTTGGAAAAGGTCCCAAAAACAAGTGTTGCCTGTGCAATCAGAAGCTGGCCTCACATCTTGGGTTGTTCAACTAGCACCCTCAAAGTGATGGTTGAACAGATTGATGACTTGGGTATTGCAAACAAGAAGTTGGGTCAGGTGATCTCTAGAAGTCCTCAGCTACTGTTACGGAAACCTAAAGAATTTCTTCAGGTAGTTTCATTCATGGAAGGTCTAGGGTTTGATAAAGAAGCGGTTGGGACCATACTTTGTCGCTGTCCTGAAATATTTGCTTCCAGCATTGAGAAAACGCTCAAGAGAAAGCTGGATTTCCTTGCGAGTATTGGTGTTTCCAAAGTTCACCTTCCTCGGGTTATCAAGAAGTATCCGGAGCTGCTTGTGTCTGACACTGACAGAACTTTGCTTCCTCGGGTGAAGTACTTGACGAAGAATGGGTTGTCACGGAGGGATATTGCATTCATGGTCCGGAGATTTTCTCCTTTGCTCGGGTACAGCGTTGAAGAGGTTTTGCAACCGAAGCTTGAATTCCTTGTAAACACCATGGGGAAGCCGATAACAGAAGTCGTGGACTATCCGAGATACTTTAGTTATTCATTAGAAAAGAAGATAAAACCAAGATACTTGGTGCTAAAGGGAAAGAATATTGAGTGTAGCTTAAAGGATATGTTGGCTAAAAATGATGACGAATTTGCTTGCGAGTTCTTGAATGTTGAAAATATGCTTGTTACATCTCCTCCACCTTCACATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

602

Amino Acids

67.93

Weight (kDa)

9.15

Isoelectric Point (pI)

47.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 276 - 582 6.2e-104 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 684
AccIII TCCGGA 2 cut(s) 1420, 1518
AciI CCGC 4 cut(s) 539, 710, 853, 1286
AcsI RAATTY 4 cut(s) 14, 1235, 1577, 1739
AcuI CTGAAG 1 cut(s) 1226
AfaI GTAC 2 cut(s) 1472, 1544
AfiI CCNNNNNNNGG 2 cut(s) 1402, 1538
AjiI CACGTC 1 cut(s) 785
AjnI CCWGG 1 cut(s) 726
AloI GAACNNNNNNTCC 2 cut(s) 1441, 1473
AluBI AGCT 8 cut(s) 272, 283, 1098, 1213, 1357, 1426, 1573, 1707
AluI AGCT 8 cut(s) 272, 283, 1098, 1213, 1357, 1426, 1573, 1707
Alw21I GWGCWC 2 cut(s) 240, 651
Alw26I GTCTC 3 cut(s) 307, 510, 536
Alw44I GTGCAC 1 cut(s) 647
AlwNI CAGNNNCTG 2 cut(s) 1098, 1216
Ama87I CYCGRG 3 cut(s) 1401, 1461, 1538
Aor13HI TCCGGA 2 cut(s) 1420, 1518
AoxI GGCC 2 cut(s) 724, 1100
ApaLI GTGCAC 1 cut(s) 647
ApeKI GCWGC 3 cut(s) 216, 260, 1426
ApoI RAATTY 4 cut(s) 14, 1235, 1577, 1739
Asp700I GAANNNNTTC 2 cut(s) 777, 1239
AspS9I GGNCC 4 cut(s) 206, 1063, 1293, 1516
AsuHPI GGTGA 8 cut(s) 31, 179, 234, 442, 467, 1204, 1385, 1477
AvaI CYCGRG 3 cut(s) 1401, 1461, 1538
AvaII GGWCC 4 cut(s) 206, 1063, 1293, 1516
BaeGI GKGCMC 1 cut(s) 651
BaeI ACNNNNGTAYC 2 cut(s) 1624, 1657
BanII GRGCYC 2 cut(s) 558, 618
BbsI GAAGAC 2 cut(s) 678, 779
Bbv12I GWGCWC 2 cut(s) 240, 651
BbvCI CCTCAGC 1 cut(s) 1209
BbvI GCAGC 3 cut(s) 228, 247, 1413
BccI CCATC 6 cut(s) 94, 183, 359, 602, 637, 1135
BciT130I CCWGG 1 cut(s) 728
BciVI GTATCC 1 cut(s) 1428
BcoDI GTCTC 3 cut(s) 307, 510, 536
BfaI CTAG 4 cut(s) 525, 1125, 1200, 1268
BfuAI ACCTGC 1 cut(s) 684
BfuI GTATCC 1 cut(s) 1428
BisI GCNGC 4 cut(s) 217, 261, 711, 1427
BlsI GCNGC 4 cut(s) 218, 262, 712, 1428
BmcAI AGTACT 1 cut(s) 1472
Bme1390I CCNGG 1 cut(s) 728
Bme18I GGWCC 4 cut(s) 206, 1063, 1293, 1516
BmeT110I CYCGRG 3 cut(s) 1401, 1461, 1538
BmgBI CACGTC 1 cut(s) 785
BmgT120I GGNCC 4 cut(s) 206, 1063, 1293, 1516
BmiI GGNNCC 3 cut(s) 807, 1065, 1294
BmrFI CCNGG 1 cut(s) 728
BmsI GCATC 1 cut(s) 739
BpiI GAAGAC 2 cut(s) 678, 779
BplI GAGNNNNNCTC 4 cut(s) 490, 522, 1513, 1545
BpmI CTGGAG 1 cut(s) 977
Bpu10I CCTNAGC 2 cut(s) 444, 1209
BpuEI CTTGAG 1 cut(s) 1331
BsaI GGTCTC 1 cut(s) 307
BsaJI CCNNGG 5 cut(s) 801, 995, 1400, 1460, 1593
BsaWI WCCGGW 4 cut(s) 232, 244, 1420, 1518
BsaXI ACNNNNNCTCC 4 cut(s) 305, 335, 1771, 1801
Bsc4I CCNNNNNNNGG 2 cut(s) 1402, 1538
Bse1I ACTGG 1 cut(s) 893
BseAI TCCGGA 2 cut(s) 1420, 1518
BseBI CCWGG 1 cut(s) 728
BseDI CCNNGG 5 cut(s) 801, 995, 1400, 1460, 1593
BseGI GGATG 6 cut(s) 62, 86, 360, 370, 388, 754
BseLI CCNNNNNNNGG 2 cut(s) 1402, 1538
BseMII CTCAG 3 cut(s) 297, 521, 1223
BseNI ACTGG 1 cut(s) 893
BseRI GAGGAG 4 cut(s) 323, 326, 389, 1776
BseSI GKGCMC 1 cut(s) 651
BseXI GCAGC 3 cut(s) 228, 247, 1413
BseYI CCCAGC 2 cut(s) 212, 736
BshFI GGCC 2 cut(s) 726, 1102
BsiHKAI GWGCWC 2 cut(s) 240, 651
BsiHKCI CYCGRG 3 cut(s) 1401, 1461, 1538
BsiSI CCGG 5 cut(s) 204, 233, 245, 1421, 1519
BslFI GGGAC 3 cut(s) 177, 1049, 1306
BslI CCNNNNNNNGG 2 cut(s) 1402, 1538
BsmAI GTCTC 3 cut(s) 307, 510, 536
BsmBI CGTCTC 1 cut(s) 536
BsmFI GGGAC 3 cut(s) 177, 1049, 1306
BsmI GAATGC 4 cut(s) 529, 634, 1014, 1508
BsnI GGCC 2 cut(s) 726, 1102
Bso31I GGTCTC 1 cut(s) 307
BsoBI CYCGRG 3 cut(s) 1401, 1461, 1538
Bsp1286I GDGCHC 4 cut(s) 240, 558, 618, 651
Bsp13I TCCGGA 2 cut(s) 1420, 1518
Bsp143I GATC 1 cut(s) 1194
Bsp19I CCATGG 2 cut(s) 995, 1593
BspACI CCGC 4 cut(s) 539, 710, 853, 1286
BspANI GGCC 2 cut(s) 726, 1102
BspCNI CTCAG 3 cut(s) 298, 520, 1222
BspEI TCCGGA 2 cut(s) 1420, 1518
BspLI GGNNCC 3 cut(s) 807, 1065, 1294
BspMI ACCTGC 1 cut(s) 684
BspTNI GGTCTC 1 cut(s) 307
BsrI ACTGG 1 cut(s) 893
BssECI CCNNGG 5 cut(s) 801, 995, 1400, 1460, 1593
BssMI GATC 1 cut(s) 1194
BssT1I CCWWGG 3 cut(s) 801, 995, 1593
Bst2UI CCWGG 1 cut(s) 728
Bst4CI ACNGT 2 cut(s) 191, 1218
Bst6I CTCTTC 1 cut(s) 1548
BstC8I GCNNGC 3 cut(s) 201, 1100, 1747
BstDEI CTNAG 4 cut(s) 306, 444, 507, 1209
BstDSI CCRYGG 2 cut(s) 995, 1593
BstF5I GGATG 6 cut(s) 62, 86, 360, 370, 388, 754
BstKTI GATC 1 cut(s) 1197
BstMAI GTCTC 3 cut(s) 307, 510, 536
BstMBI GATC 1 cut(s) 1194
BstMWI GCNNNNNNNGC 3 cut(s) 269, 861, 1570
BstNI CCWGG 1 cut(s) 728
BstNSI RCATGY 1 cut(s) 736
BstSCI CCNGG 1 cut(s) 726
BstSLI GKGCMC 1 cut(s) 651
BstV1I GCAGC 3 cut(s) 228, 247, 1413
BstV2I GAAGAC 2 cut(s) 678, 779
BsuI GTATCC 1 cut(s) 1428
BsuRI GGCC 2 cut(s) 726, 1102
BtgI CCRYGG 2 cut(s) 995, 1593
BtgZI GCGATG 1 cut(s) 527
BtrI CACGTC 1 cut(s) 785
BtsCI GGATG 6 cut(s) 62, 86, 360, 370, 388, 754
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 2 cut(s) 324, 1440
BveI ACCTGC 1 cut(s) 684
Cac8I GCNNGC 3 cut(s) 201, 1100, 1747
CaiI CAGNNNCTG 2 cut(s) 1098, 1216
Cfr13I GGNCC 4 cut(s) 206, 1063, 1293, 1516
Csp6I GTAC 2 cut(s) 1471, 1543
CviAII CATG 7 cut(s) 733, 814, 865, 996, 1258, 1513, 1594
CviQI GTAC 2 cut(s) 1471, 1543
DdeI CTNAG 4 cut(s) 306, 444, 507, 1209
DpnI GATC 1 cut(s) 1196
DpnII GATC 1 cut(s) 1194
DraI TTTAAA 1 cut(s) 421
Eam1104I CTCTTC 1 cut(s) 1548
EarI CTCTTC 1 cut(s) 1548
EciI GGCGGA 1 cut(s) 554
Eco130I CCWWGG 3 cut(s) 801, 995, 1593
Eco147I AGGCCT 1 cut(s) 726
Eco24I GRGCYC 2 cut(s) 558, 618
Eco31I GGTCTC 1 cut(s) 307
Eco47I GGWCC 4 cut(s) 206, 1063, 1293, 1516
Eco57I CTGAAG 1 cut(s) 1226
Eco88I CYCGRG 3 cut(s) 1401, 1461, 1538
EcoO109I RGGNCCY 1 cut(s) 1063
EcoRI GAATTC 1 cut(s) 1577
EcoRII CCWGG 1 cut(s) 726
EcoT14I CCWWGG 3 cut(s) 801, 995, 1593
EcoT38I GRGCYC 2 cut(s) 558, 618
ErhI CCWWGG 3 cut(s) 801, 995, 1593
Esp3I CGTCTC 1 cut(s) 536
FaeI CATG 7 cut(s) 736, 817, 868, 999, 1261, 1516, 1597
FalI AAGNNNNNCTT 6 cut(s) 1023, 1055, 1224, 1256, 1380, 1412
FaqI GGGAC 3 cut(s) 177, 1049, 1306
FatI CATG 7 cut(s) 732, 813, 864, 995, 1257, 1512, 1593
Fnu4HI GCNGC 4 cut(s) 217, 261, 711, 1427
FokI GGATG 6 cut(s) 49, 73, 367, 377, 395, 761
FriOI GRGCYC 2 cut(s) 558, 618
Fsp4HI GCNGC 4 cut(s) 217, 261, 711, 1427
FspBI CTAG 4 cut(s) 525, 1125, 1200, 1268
GluI GCNGC 4 cut(s) 217, 261, 711, 1427
GsaI CCCAGC 2 cut(s) 216, 740
GsuI CTGGAG 1 cut(s) 977
HaeIII GGCC 2 cut(s) 726, 1102
HapII CCGG 5 cut(s) 204, 233, 245, 1421, 1519
Hin1II CATG 7 cut(s) 736, 817, 868, 999, 1261, 1516, 1597
HindIII AAGCTT 1 cut(s) 1571
HinfI GANTC 5 cut(s) 293, 499, 773, 849, 1000
HpaII CCGG 5 cut(s) 204, 233, 245, 1421, 1519
HphI GGTGA 8 cut(s) 31, 179, 234, 442, 467, 1204, 1385, 1477
Hpy166II GTNNAC 4 cut(s) 649, 1393, 1588, 1621
Hpy188I TCNGA 5 cut(s) 307, 848, 1094, 1438, 1629
Hpy8I GTNNAC 4 cut(s) 649, 1393, 1588, 1621
Hpy99I CGWCG 2 cut(s) 538, 639
HpyAV CCTTC 9 cut(s) 100, 194, 421, 559, 574, 703, 1256, 1406, 1803
HpyCH4III ACNGT 2 cut(s) 191, 1218
HpyCH4IV ACGT 2 cut(s) 545, 784
HpyCH4V TGCA 6 cut(s) 649, 679, 1088, 1172, 1508, 1564
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 861, 1570
HpyF3I CTNAG 4 cut(s) 306, 444, 507, 1209
HpySE526I ACGT 2 cut(s) 545, 784
Hsp92II CATG 7 cut(s) 736, 817, 868, 999, 1261, 1516, 1597
Kpn2I TCCGGA 2 cut(s) 1420, 1518
Kzo9I GATC 1 cut(s) 1194
LmnI GCTCC 6 cut(s) 229, 235, 247, 280, 805, 1423
Lsp1109I GCAGC 3 cut(s) 228, 247, 1413
LweI GCATC 1 cut(s) 739
MaeI CTAG 4 cut(s) 525, 1125, 1200, 1268
MaeII ACGT 2 cut(s) 545, 784
MaeIII GTNAC 6 cut(s) 455, 546, 602, 1218, 1491, 1777
MalI GATC 1 cut(s) 1196
MboI GATC 1 cut(s) 1194
MboII GAAGA 8 cut(s) 85, 278, 683, 779, 1232, 1492, 1565, 1669
MhlI GDGCHC 4 cut(s) 240, 558, 618, 651
MluCI AATT 5 cut(s) 14, 657, 1235, 1577, 1739
MlyI GAGTC 3 cut(s) 302, 508, 858
MmeI TCCRAC 1 cut(s) 360
MroI TCCGGA 2 cut(s) 1420, 1518
MroXI GAANNNNTTC 2 cut(s) 777, 1239
MseI TTAA 7 cut(s) 44, 420, 561, 570, 942, 987, 1709
MslI CAYNNNNRTG 1 cut(s) 1801
MspI CCGG 5 cut(s) 204, 233, 245, 1421, 1519
MspR9I CCNGG 1 cut(s) 728
Mva1269I GAATGC 4 cut(s) 529, 634, 1014, 1508
MvaI CCWGG 1 cut(s) 728
MwoI GCNNNNNNNGC 3 cut(s) 269, 861, 1570
NcoI CCATGG 2 cut(s) 995, 1593
NdeII GATC 1 cut(s) 1194
NlaIII CATG 7 cut(s) 736, 817, 868, 999, 1261, 1516, 1597
NlaIV GGNNCC 3 cut(s) 807, 1065, 1294
NmeAIII GCCGAG 1 cut(s) 366
NmuCI GTSAC 2 cut(s) 455, 1491
NspI RCATGY 1 cut(s) 736
PceI AGGCCT 1 cut(s) 726
PcsI WCGNNNNNNNCGW 2 cut(s) 542, 1545
PctI GAATGC 4 cut(s) 529, 634, 1014, 1508
PdmI GAANNNNTTC 2 cut(s) 777, 1239
PfeI GAWTC 2 cut(s) 773, 1000
PkrI GCNGC 4 cut(s) 218, 262, 712, 1428
PleI GAGTC 3 cut(s) 301, 507, 857
PpsI GAGTC 3 cut(s) 301, 507, 857
PpuMI RGGWCCY 1 cut(s) 1063
Psp5II RGGWCCY 1 cut(s) 1063
Psp6I CCWGG 1 cut(s) 726
PspFI CCCAGC 2 cut(s) 212, 736
PspGI CCWGG 1 cut(s) 726
PspN4I GGNNCC 3 cut(s) 807, 1065, 1294
PspPI GGNCC 4 cut(s) 206, 1063, 1293, 1516
PspPPI RGGWCCY 1 cut(s) 1063
PstNI CAGNNNCTG 2 cut(s) 1098, 1216
RsaI GTAC 2 cut(s) 1472, 1544
RsaNI GTAC 2 cut(s) 1471, 1543
RseI CAYNNNNRTG 1 cut(s) 1801
SaqAI TTAA 7 cut(s) 44, 420, 561, 570, 942, 987, 1709
SatI GCNGC 4 cut(s) 217, 261, 711, 1427
Sau3AI GATC 1 cut(s) 1194
Sau96I GGNCC 4 cut(s) 206, 1063, 1293, 1516
ScaI AGTACT 1 cut(s) 1472
SchI GAGTC 3 cut(s) 302, 508, 858
ScrFI CCNGG 1 cut(s) 728
SduI GDGCHC 4 cut(s) 240, 558, 618, 651
SfaNI GCATC 1 cut(s) 739
SinI GGWCC 4 cut(s) 206, 1063, 1293, 1516
SmiMI CAYNNNNRTG 1 cut(s) 1801
SmlI CTYRAG 1 cut(s) 1346
SmoI CTYRAG 1 cut(s) 1346
Sse9I AATT 5 cut(s) 14, 657, 1235, 1577, 1739
SseBI AGGCCT 1 cut(s) 726
SsiI CCGC 4 cut(s) 539, 710, 853, 1286
SspI AATATT 4 cut(s) 520, 588, 1320, 1696
SspMI CTAG 4 cut(s) 525, 1125, 1200, 1268
StuI AGGCCT 1 cut(s) 726
StyD4I CCNGG 1 cut(s) 726
StyI CCWWGG 3 cut(s) 801, 995, 1593
TaaI ACNGT 2 cut(s) 191, 1218
TaiI ACGT 2 cut(s) 548, 787
TaqI TCGA 1 cut(s) 289
TasI AATT 5 cut(s) 14, 657, 1235, 1577, 1739
TatI WGTACW 1 cut(s) 1470
TauI GCSGC 1 cut(s) 713
TfiI GAWTC 2 cut(s) 773, 1000
Tru1I TTAA 7 cut(s) 44, 420, 561, 570, 942, 987, 1709
Tru9I TTAA 7 cut(s) 44, 420, 561, 570, 942, 987, 1709
TscAI CASTG 2 cut(s) 324, 1447
TseFI GTSAC 2 cut(s) 455, 1491
TseI GCWGC 3 cut(s) 216, 260, 1426
Tsp45I GTSAC 2 cut(s) 455, 1491
TspDTI ATGAA 6 cut(s) 530, 684, 1242, 1246, 1501, 1635
TspGWI ACGGA 3 cut(s) 749, 1237, 1510
TspRI CASTG 2 cut(s) 324, 1447
VneI GTGCAC 1 cut(s) 647
VpaK11BI GGWCC 4 cut(s) 206, 1063, 1293, 1516
XapI RAATTY 4 cut(s) 14, 1235, 1577, 1739
XbaI TCTAGA 1 cut(s) 1199
XceI RCATGY 1 cut(s) 736
XcmI CCANNNNNNNNNTGG 1 cut(s) 900
XmnI GAANNNNTTC 2 cut(s) 777, 1239
XspI CTAG 4 cut(s) 525, 1125, 1200, 1268
ZrmI AGTACT 1 cut(s) 1472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.