Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006549

Physical Location & Seq

Genomic Coordinates Forward (+)

23736686 .. 23739775

Gene Structure 3090 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g20560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGTTGGTGGATGGGGTTGAGGAGTTGGATGAGCTTGGGGCGTGGAGAGAGCAGTTGGTTGGGTTTAAAGAGAAGGTGAAGTATTTGGCTAAGGAGAAAGGTGACAATGGAAAGGTTGCGTTTTTGGAGTGTGTGGTTGGGTTGAGTCTGTCTCAGGCGATGAATATTGCTAGGCAATCGTCGGCGGAGACGTTACTTGGGCTCATTAAGAAGGTTAAGTGTGTGAAGGAAATGTTCTTTTCTGGCAGTAATGATGGGGGGCTCATTGGAAAGAATGCTCGTCGTATGATGGTGCACCTATCAATTCCTATTGATGAAGACCTGCAGCAAACCTTATCCTTGTTTGAAAAGATTGCGGCAAGGCGTGGAGGTCTGGACATGTTGGGTATTGAGGATGCTACTTTCCGTTATTTGATTGAATCATTTCCGCGTCTTCTATTGCTGTCCTTGGAGCCTCACATGACCCTTGTGGTTGAATATCTTGAAAATATCAGAGTCCGCAGAGAAAGCATGAGAACCATACTTTCGTTATTTCCACCGGTTATATTTTGGAACATTAAGGTCGTTAGAGCGAGAGTGAGTGTTTTTAAGGAGTTTGGTCTGGAGGATAAAGATGTTGGATCAATGATGATTAATATCCATGGATTCTATCTACAAGCATTCACGAGAACTTCAAAGAGGTTCTTACTTTCTTTGATTTGGAAAAGAAGCTGGCCTCACATCTTGGGTTGTTCAACTAGTACCCTCAAAGTGATGGTTGAACAGATTGATGACTTGAGTATTGCAAACAAGAAGTTGGGTCAGGTGATCTCTAGAAGTCGTCAGCTACTATTACGGAAACCTAAAGAATTTCTTCAGGTAGTTTCATTCATGGAAGGTCTAGGGTTTGATAAAGAAGCGGTTGGGACCATACTTGGTCGCTGTCCTGAAATATTTGCTTCCAGCATTGAGAAAACGCTCAAGAGAAAGCTGGATTTCCTTGCGAGTATTGGTGTTTCCAAAGTTCACCTTCCTCGGGTTATCAAGAAGTATCCGGAGCTTCTTGTGTCTGACACTGACAGAACTTTGCTTCCTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

360

Amino Acids

40.75

Weight (kDa)

9.48

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	125 - 211	1e-07	mTERF
mTERF	PF02536	236 - 358	3.1e-32	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78930
fragaria_vesca	FvH4_4g20560 FvH4_6g36600
malus_domestica	MD09G1167200.v1.1 MD09G1167300.v1.1 MD17G1161200.v1.1
prunus_persica	Prupe.3G025200_v2.0.a1 Prupe.3G025200_v2.0.a1 Prupe.3G025200_v2.0.a1 Prupe.3G025200_v2.0.a1 Prupe.3G025200_v2.0.a1 Prupe.3G025200_v2.0.a1
pyrus_communis	pycom09g08480 pycom17g15380
rosa_chinensis	RchiOBHm_Chr2g0149071
rosa_laevigata	RLG00000020366
rosa_multiflora	Rmu_sc0002345.1_g000001 Rmu_sc0007360.1_g000001 Rmu_sc0034832.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098500
rosa_rugosa	Rorug02G0409100
rosa_samantha	Rh2AG468400 Rh2BG481100 Rh2CG454600 Rh2DG489900
rosa_wichuraiana	Rw2G038150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	330
AccII	CGCG	1 cut(s)	430
AccIII	TCCGGA	1 cut(s)	1033
AciI	CCGC	5 cut(s)	185, 356, 428, 499, 899
AclWI	GGATC	1 cut(s)	628
AcsI	RAATTY	1 cut(s)	848
AcuI	CTGAAG	1 cut(s)	839
AfaI	GTAC	1 cut(s)	742
AfiI	CCNNNNNNNGG	1 cut(s)	1015
AflIII	ACRYGT	1 cut(s)	378
AgeI	ACCGGT	1 cut(s)	538
AgsI	TTSAA	7 cut(s)	347, 419, 476, 485, 675, 735, 761
AhlI	ACTAGT	1 cut(s)	737
AloI	GAACNNNNNNTCC	1 cut(s)	1054
AluBI	AGCT	5 cut(s)	34, 711, 826, 970, 1039
AluI	AGCT	5 cut(s)	34, 711, 826, 970, 1039
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	2 cut(s)	156, 182
Alw44I	GTGCAC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	628
Ama87I	CYCGRG	1 cut(s)	1014
Aor13HI	TCCGGA	1 cut(s)	1033
AoxI	GGCC	1 cut(s)	713
ApaLI	GTGCAC	1 cut(s)	293
ApeKI	GCWGC	1 cut(s)	325
ApoI	RAATTY	1 cut(s)	848
AseI	ATTAAT	1 cut(s)	633
AsiGI	ACCGGT	1 cut(s)	538
Asp700I	GAANNNNTTC	2 cut(s)	423, 852
AspS9I	GGNCC	1 cut(s)	906
AsuHPI	GGTGA	4 cut(s)	88, 113, 817, 998
AvaI	CYCGRG	1 cut(s)	1014
AvaII	GGWCC	1 cut(s)	906
BaeGI	GKGCMC	1 cut(s)	297
BanII	GRGCYC	2 cut(s)	204, 264
BauI	CACGAG	1 cut(s)	664
BbsI	GAAGAC	2 cut(s)	324, 425
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	4 cut(s)	5, 248, 283, 748
BciVI	GTATCC	1 cut(s)	1041
BcoDI	GTCTC	2 cut(s)	156, 182
BcuI	ACTAGT	1 cut(s)	737
BfaI	CTAG	4 cut(s)	171, 738, 813, 881
BfmI	CTRYAG	1 cut(s)	323
BfuAI	ACCTGC	1 cut(s)	330
BfuI	GTATCC	1 cut(s)	1041
BisI	GCNGC	2 cut(s)	326, 357
BlsI	GCNGC	2 cut(s)	327, 358
Bme18I	GGWCC	1 cut(s)	906
BmeT110I	CYCGRG	1 cut(s)	1014
BmgT120I	GGNCC	1 cut(s)	906
BmiI	GGNNCC	2 cut(s)	453, 907
BmsI	GCATC	1 cut(s)	385
BpiI	GAAGAC	2 cut(s)	324, 425
BplI	GAGNNNNNCTC	2 cut(s)	136, 168
BpmI	CTGGAG	1 cut(s)	623
Bpu10I	CCTNAGC	1 cut(s)	90
BpuEI	CTTGAG	2 cut(s)	796, 944
BsaBI	GATNNNNATC	1 cut(s)	635
BsaJI	CCNNGG	4 cut(s)	447, 640, 1013, 1073
BsaWI	WCCGGW	2 cut(s)	538, 1033
Bsc4I	CCNNNNNNNGG	1 cut(s)	1015
Bse118I	RCCGGY	1 cut(s)	538
Bse8I	GATNNNNATC	1 cut(s)	635
BseAI	TCCGGA	1 cut(s)	1033
BseDI	CCNNGG	4 cut(s)	447, 640, 1013, 1073
BseGI	GGATG	3 cut(s)	16, 34, 400
BseJI	GATNNNNATC	1 cut(s)	635
BseLI	CCNNNNNNNGG	1 cut(s)	1015
BseMII	CTCAG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	297
BseXI	GCAGC	1 cut(s)	337
Bsh1236I	CGCG	1 cut(s)	430
BshFI	GGCC	1 cut(s)	715
BshTI	ACCGGT	1 cut(s)	538
BsiHKAI	GWGCWC	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	1014
BsiSI	CCGG	2 cut(s)	539, 1034
BslFI	GGGAC	1 cut(s)	919
BslI	CCNNNNNNNGG	1 cut(s)	1015
BsmAI	GTCTC	2 cut(s)	156, 182
BsmBI	CGTCTC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	919
BsmI	GAATGC	2 cut(s)	280, 659
BsnI	GGCC	1 cut(s)	715
BsoBI	CYCGRG	1 cut(s)	1014
Bsp1286I	GDGCHC	3 cut(s)	204, 264, 297
Bsp13I	TCCGGA	1 cut(s)	1033
Bsp143I	GATC	2 cut(s)	620, 807
Bsp19I	CCATGG	1 cut(s)	640
BspACI	CCGC	5 cut(s)	185, 356, 428, 499, 899
BspANI	GGCC	1 cut(s)	715
BspCNI	CTCAG	1 cut(s)	166
BspEI	TCCGGA	1 cut(s)	1033
BspFNI	CGCG	1 cut(s)	430
BspLI	GGNNCC	2 cut(s)	453, 907
BspMAI	CTGCAG	1 cut(s)	327
BspMI	ACCTGC	1 cut(s)	330
BspPI	GGATC	1 cut(s)	628
BsrFI	RCCGGY	1 cut(s)	538
BssAI	RCCGGY	1 cut(s)	538
BssECI	CCNNGG	4 cut(s)	447, 640, 1013, 1073
BssMI	GATC	2 cut(s)	620, 807
BssSI	CACGAG	1 cut(s)	664
BssT1I	CCWWGG	2 cut(s)	447, 640
Bst2BI	CACGAG	1 cut(s)	664
BstC8I	GCNNGC	1 cut(s)	713
BstDEI	CTNAG	2 cut(s)	90, 153
BstDSI	CCRYGG	1 cut(s)	640
BstF5I	GGATG	3 cut(s)	16, 34, 400
BstFNI	CGCG	1 cut(s)	430
BstKTI	GATC	2 cut(s)	623, 810
BstMAI	GTCTC	2 cut(s)	156, 182
BstMBI	GATC	2 cut(s)	620, 807
BstMWI	GCNNNNNNNGC	1 cut(s)	507
BstNSI	RCATGY	1 cut(s)	382
BstSFI	CTRYAG	1 cut(s)	323
BstSLI	GKGCMC	1 cut(s)	297
BstUI	CGCG	1 cut(s)	430
BstV1I	GCAGC	1 cut(s)	337
BstV2I	GAAGAC	2 cut(s)	324, 425
BsuI	GTATCC	1 cut(s)	1041
BsuRI	GGCC	1 cut(s)	715
BtgI	CCRYGG	1 cut(s)	640
BtgZI	GCGATG	1 cut(s)	173
BtsCI	GGATG	3 cut(s)	16, 34, 400
BtsIMutI	CAGTG	1 cut(s)	1053
BveI	ACCTGC	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	713
Cfr10I	RCCGGY	1 cut(s)	538
Cfr13I	GGNCC	1 cut(s)	906
CseI	GACGC	1 cut(s)	419
Csp6I	GTAC	1 cut(s)	741
CspAI	ACCGGT	1 cut(s)	538
CviAII	CATG	5 cut(s)	379, 460, 511, 641, 871
CviQI	GTAC	1 cut(s)	741
DdeI	CTNAG	2 cut(s)	90, 153
DpnI	GATC	2 cut(s)	622, 809
DpnII	GATC	2 cut(s)	620, 807
DraI	TTTAAA	1 cut(s)	67
EciI	GGCGGA	1 cut(s)	200
Eco130I	CCWWGG	2 cut(s)	447, 640
Eco24I	GRGCYC	2 cut(s)	204, 264
Eco47I	GGWCC	1 cut(s)	906
Eco57I	CTGAAG	1 cut(s)	839
Eco88I	CYCGRG	1 cut(s)	1014
EcoT14I	CCWWGG	2 cut(s)	447, 640
EcoT38I	GRGCYC	2 cut(s)	204, 264
ErhI	CCWWGG	2 cut(s)	447, 640
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	5 cut(s)	382, 463, 514, 644, 874
FaiI	YATR	9 cut(s)	287, 380, 461, 512, 521, 545, 642, 872, 911
FalI	AAGNNNNNCTT	6 cut(s)	668, 700, 837, 869, 993, 1025
FaqI	GGGAC	1 cut(s)	919
FatI	CATG	5 cut(s)	378, 459, 510, 640, 870
Fnu4HI	GCNGC	2 cut(s)	326, 357
FokI	GGATG	3 cut(s)	23, 41, 407
FriOI	GRGCYC	2 cut(s)	204, 264
Fsp4HI	GCNGC	2 cut(s)	326, 357
FspBI	CTAG	4 cut(s)	171, 738, 813, 881
GluI	GCNGC	2 cut(s)	326, 357
GsuI	CTGGAG	1 cut(s)	623
HaeIII	GGCC	1 cut(s)	715
HapII	CCGG	2 cut(s)	539, 1034
HgaI	GACGC	1 cut(s)	419
Hin1II	CATG	5 cut(s)	382, 463, 514, 644, 874
HinfI	GANTC	4 cut(s)	145, 419, 495, 645
HpaII	CCGG	2 cut(s)	539, 1034
HphI	GGTGA	4 cut(s)	88, 113, 817, 998
Hpy166II	GTNNAC	2 cut(s)	295, 1006
Hpy188I	TCNGA	2 cut(s)	494, 1051
Hpy188III	TCNNGA	9 cut(s)	374, 482, 602, 664, 813, 926, 961, 1024, 1034
Hpy8I	GTNNAC	2 cut(s)	295, 1006
Hpy99I	CGWCG	2 cut(s)	184, 285
HpyAV	CCTTC	5 cut(s)	67, 205, 220, 869, 1019
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	3 cut(s)	295, 325, 785
HpyF10VI	GCNNNNNNNGC	1 cut(s)	507
HpyF3I	CTNAG	2 cut(s)	90, 153
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	5 cut(s)	382, 463, 514, 644, 874
Kpn2I	TCCGGA	1 cut(s)	1033
Kzo9I	GATC	2 cut(s)	620, 807
LmnI	GCTCC	2 cut(s)	451, 1036
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	4 cut(s)	171, 738, 813, 881
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	2 cut(s)	101, 192
MalI	GATC	2 cut(s)	622, 809
MboI	GATC	2 cut(s)	620, 807
MboII	GAAGA	3 cut(s)	329, 425, 845
MhlI	GDGCHC	3 cut(s)	204, 264, 297
MluCI	AATT	2 cut(s)	303, 848
MlyI	GAGTC	2 cut(s)	154, 504
MmeI	TCCRAC	2 cut(s)	6, 598
MnlI	CCTC	9 cut(s)	13, 362, 385, 465, 598, 672, 726, 755, 1023
MroI	TCCGGA	1 cut(s)	1033
MroXI	GAANNNNTTC	2 cut(s)	423, 852
MseI	TTAA	6 cut(s)	66, 207, 216, 558, 588, 633
MspI	CCGG	2 cut(s)	539, 1034
Mva1269I	GAATGC	2 cut(s)	280, 659
MvnI	CGCG	1 cut(s)	430
MwoI	GCNNNNNNNGC	1 cut(s)	507
NcoI	CCATGG	1 cut(s)	640
NdeII	GATC	2 cut(s)	620, 807
NlaIII	CATG	5 cut(s)	382, 463, 514, 644, 874
NlaIV	GGNNCC	2 cut(s)	453, 907
NmuCI	GTSAC	1 cut(s)	101
NspI	RCATGY	1 cut(s)	382
PciI	ACATGT	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	1 cut(s)	188
PctI	GAATGC	2 cut(s)	280, 659
PdmI	GAANNNNTTC	2 cut(s)	423, 852
PfeI	GAWTC	2 cut(s)	419, 645
PinAI	ACCGGT	1 cut(s)	538
PkrI	GCNGC	2 cut(s)	327, 358
PleI	GAGTC	2 cut(s)	153, 503
PpsI	GAGTC	2 cut(s)	153, 503
PscI	ACATGT	1 cut(s)	378
PshBI	ATTAAT	1 cut(s)	633
PspN4I	GGNNCC	2 cut(s)	453, 907
PspPI	GGNCC	1 cut(s)	906
PstI	CTGCAG	1 cut(s)	327
RsaI	GTAC	1 cut(s)	742
RsaNI	GTAC	1 cut(s)	741
SaqAI	TTAA	6 cut(s)	66, 207, 216, 558, 588, 633
SatI	GCNGC	2 cut(s)	326, 357
Sau3AI	GATC	2 cut(s)	620, 807
Sau96I	GGNCC	1 cut(s)	906
SchI	GAGTC	2 cut(s)	154, 504
SduI	GDGCHC	3 cut(s)	204, 264, 297
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	1 cut(s)	323
SinI	GGWCC	1 cut(s)	906
SmlI	CTYRAG	2 cut(s)	775, 959
SmoI	CTYRAG	2 cut(s)	775, 959
SpeI	ACTAGT	1 cut(s)	737
Sse9I	AATT	2 cut(s)	303, 848
SsiI	CCGC	5 cut(s)	185, 356, 428, 499, 899
SspI	AATATT	2 cut(s)	166, 933
SspMI	CTAG	4 cut(s)	171, 738, 813, 881
StyI	CCWWGG	2 cut(s)	447, 640
TaiI	ACGT	1 cut(s)	194
TasI	AATT	2 cut(s)	303, 848
TauI	GCSGC	1 cut(s)	359
TfiI	GAWTC	2 cut(s)	419, 645
Tru1I	TTAA	6 cut(s)	66, 207, 216, 558, 588, 633
Tru9I	TTAA	6 cut(s)	66, 207, 216, 558, 588, 633
TscAI	CASTG	1 cut(s)	1060
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	1 cut(s)	325
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	4 cut(s)	176, 330, 855, 859
TspGWI	ACGGA	2 cut(s)	395, 850
TspRI	CASTG	1 cut(s)	1060
VneI	GTGCAC	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	906
VspI	ATTAAT	1 cut(s)	633
XapI	RAATTY	1 cut(s)	848
XbaI	TCTAGA	1 cut(s)	812
XceI	RCATGY	1 cut(s)	382
XmnI	GAANNNNTTC	2 cut(s)	423, 852
XspI	CTAG	4 cut(s)	171, 738, 813, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.