MD09G1167300.v1.1
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0006549
Physical Location & Seq
Reverse (-)
13710967 .. 13712337
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1167300.v1.1.491

Sequence Viewer

Length: 486 bp
ATGGATGGGGTTGTGGAGTTGGATGAGCTGGGGATGTGGGGAGAGTGGGAGAAGGAGGGGAGAGAATTGGGGGCGTTCAAAGGGAAGGTGAGGTATTTGGCTATAGAGAAAGGTGACAATGGAAAGGTTGCGTTTTTGGAGGGTGTGGTCGGGTTGAATCTGTCTTCGGCTATGAATGTTGCCAGGCATTTATCTGCAGAGACGCTTCCGGGGCTCGGCTCATTGAGAAGGTTAAACTATGTGAAGAAAATATTCTTTTCTGACAGTAGTGATGGTGGGTTCACTGGGAAAAATGCTCGTCGTATGATGATGCACTTATCAATTCCTATTGATGATGACTTGCAACAAACCCTATCCTTTTTTTTAAAAGGTCTGATTGTAGCAAGGTGTAGAGGTCTGGATATGTTGGGCTCTGGAGATGCTGCTGTCCGTTGCTTAATTGAATCCTTTCCACGTCTTCTTTTTTTTTCTTTTTTTTTTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

162

Amino Acids

17.92

Weight (kDa)

7.78

Isoelectric Point (pI)

27.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 215
AgsI TTSAA 3 cut(s) 79, 157, 443
AjiI CACGTC 1 cut(s) 455
AjnI CCWGG 1 cut(s) 182
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 422
Asp700I GAANNNNTTC 2 cut(s) 251, 447
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 2 cut(s) 100, 125
BanII GRGCYC 2 cut(s) 216, 413
BbsI GAAGAC 2 cut(s) 156, 449
BbvI GCAGC 1 cut(s) 409
BccI CCATC 1 cut(s) 266
BciT130I CCWGG 1 cut(s) 184
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 194
BfmI CTRYAG 2 cut(s) 102, 195
BisI GCNGC 1 cut(s) 423
BlsI GCNGC 1 cut(s) 424
Bme1390I CCNGG 2 cut(s) 184, 210
BmgBI CACGTC 1 cut(s) 455
BmrFI CCNGG 2 cut(s) 184, 210
BmrI ACTGGG 1 cut(s) 294
BmsI GCATC 2 cut(s) 300, 409
BmuI ACTGGG 1 cut(s) 294
BpiI GAAGAC 2 cut(s) 156, 449
BpmI CTGGAG 1 cut(s) 435
BpuMI CCSGG 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 209
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 289
BseBI CCWGG 1 cut(s) 184
BseDI CCNNGG 1 cut(s) 209
BseGI GGATG 3 cut(s) 10, 28, 39
BseLI CCNNNNNNNGG 1 cut(s) 215
BseNI ACTGG 1 cut(s) 289
BseXI GCAGC 1 cut(s) 409
BseYI CCCAGC 1 cut(s) 28
BsiSI CCGG 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 1 cut(s) 194
BsmBI CGTCTC 1 cut(s) 194
Bsp1286I GDGCHC 2 cut(s) 216, 413
BspMAI CTGCAG 1 cut(s) 199
BsrI ACTGG 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 209
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 1 cut(s) 266
BstF5I GGATG 3 cut(s) 10, 28, 39
BstMAI GTCTC 1 cut(s) 194
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstNI CCWGG 1 cut(s) 184
BstSCI CCNGG 2 cut(s) 182, 208
BstSFI CTRYAG 2 cut(s) 102, 195
BstV1I GCAGC 1 cut(s) 409
BstV2I GAAGAC 2 cut(s) 156, 449
BtrI CACGTC 1 cut(s) 455
BtsCI GGATG 3 cut(s) 10, 28, 39
BtsIMutI CAGTG 1 cut(s) 282
CseI GACGC 1 cut(s) 211
CviJI RGCY 6 cut(s) 28, 101, 170, 214, 219, 411
CviKI_1 RGCY 6 cut(s) 28, 101, 170, 214, 219, 411
DraI TTTAAA 1 cut(s) 366
Eco24I GRGCYC 2 cut(s) 216, 413
EcoRII CCWGG 1 cut(s) 182
EcoT38I GRGCYC 2 cut(s) 216, 413
Esp3I CGTCTC 1 cut(s) 194
FaiI YATR 5 cut(s) 104, 173, 240, 305, 404
Fnu4HI GCNGC 1 cut(s) 423
FokI GGATG 3 cut(s) 17, 35, 46
FriOI GRGCYC 2 cut(s) 216, 413
Fsp4HI GCNGC 1 cut(s) 423
GluI GCNGC 1 cut(s) 423
GsaI CCCAGC 1 cut(s) 32
GsuI CTGGAG 1 cut(s) 435
HapII CCGG 1 cut(s) 209
HgaI GACGC 1 cut(s) 211
HinfI GANTC 2 cut(s) 157, 443
HpaII CCGG 1 cut(s) 209
HphI GGTGA 2 cut(s) 100, 125
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 2 cut(s) 262, 375
Hpy188III TCNNGA 2 cut(s) 398, 414
Hpy8I GTNNAC 1 cut(s) 282
Hpy99I CGWCG 1 cut(s) 303
HpyAV CCTTC 3 cut(s) 46, 79, 222
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4IV ACGT 1 cut(s) 454
HpyCH4V TGCA 3 cut(s) 197, 313, 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpySE526I ACGT 1 cut(s) 454
LpnPI CCDG 7 cut(s) 14, 169, 196, 222, 270, 383, 399
Lsp1109I GCAGC 1 cut(s) 409
LweI GCATC 2 cut(s) 300, 409
MaeII ACGT 1 cut(s) 454
MaeIII GTNAC 1 cut(s) 113
MboII GAAGA 3 cut(s) 156, 256, 449
MhlI GDGCHC 2 cut(s) 216, 413
MluCI AATT 3 cut(s) 65, 321, 438
MnlI CCTC 4 cut(s) 49, 84, 133, 386
MroXI GAANNNNTTC 2 cut(s) 251, 447
MseI TTAA 3 cut(s) 233, 365, 437
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 2 cut(s) 184, 210
MvaI CCWGG 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 211
NciI CCSGG 1 cut(s) 210
NmeAIII GCCGAG 1 cut(s) 195
NmuCI GTSAC 1 cut(s) 113
PdmI GAANNNNTTC 2 cut(s) 251, 447
PfeI GAWTC 2 cut(s) 157, 443
PkrI GCNGC 1 cut(s) 424
Psp6I CCWGG 1 cut(s) 182
PspFI CCCAGC 1 cut(s) 28
PspGI CCWGG 1 cut(s) 182
PstI CTGCAG 1 cut(s) 199
SaqAI TTAA 3 cut(s) 233, 365, 437
SatI GCNGC 1 cut(s) 423
ScrFI CCNGG 2 cut(s) 184, 210
SduI GDGCHC 2 cut(s) 216, 413
SfaNI GCATC 2 cut(s) 300, 409
SfcI CTRYAG 2 cut(s) 102, 195
Sse9I AATT 3 cut(s) 65, 321, 438
SspI AATATT 1 cut(s) 252
StyD4I CCNGG 2 cut(s) 182, 208
TaaI ACNGT 1 cut(s) 266
TaiI ACGT 1 cut(s) 457
TasI AATT 3 cut(s) 65, 321, 438
TfiI GAWTC 2 cut(s) 157, 443
Tru1I TTAA 3 cut(s) 233, 365, 437
Tru9I TTAA 3 cut(s) 233, 365, 437
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 1 cut(s) 422
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 188
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 1 cut(s) 289
XmnI GAANNNNTTC 2 cut(s) 251, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.