Rh2DG489900
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006549
Physical Location & Seq
Forward (+)
71017810 .. 71022069
4260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG489900.1

Sequence Viewer

Length: 1806 bp
ATGTCCTCCCCCAAATTCCTCTCAATCCCCACAACTCTCACCTTAACTATCAACTTATCCTCATCCCTAAACCCACCCAGAACCCCATCCTTCTTCCCAAACCCCACATTAACTCTCAGACTCCACCTTACCCAAAACCCCAAGAACCCATTTTTCCACACCCCCTCCAAAACCCATCTCCACCTTCACCATCCCCTTCTCGCCGCACCACCCAGCAGCCCTGCGCCCCCGCCGGACCACCAATCGGAGCAAGTCTTGGCTGCCCAAGAAGCTATCTTGGAGTTTCTTCAAGAACTTGGGGTTTCTGAGGAGGAAGCAATCTTTGTTTCTTCAAATTCGCCTAGATATATGCGGGTGTTGGTGGATGGGGTCCAGGAGTTGGATGAGCTTGGGGTGTGGAGAGAGCAGTTGGTTGGGTTTAAAGAGAAGGTCAAGTATTTGGCTAAGGAGAAAGGTGACAATGGCAAGGTTGCGTTTTTGGAGAGTGTGGTTGGGTTGGGTCTATCTTCGGCTATGAATATTGCAAGGCATTCGTCGGCAGAGACACTACCTGGGCTCATTGACAAGGTTAAGTATGTGAAGGAAATATTCTTTTCTGGCAGTAATGATGGGGGACTCATTGGAAAAAATGCTCGTCGTATGATGATGCACCTATCAATTCCTATTGATGAAGACCTGCAACTAACCTTATCCTTCTTTGAAAAGATTGCGGCTAGGCGTGGAGGTCTGGACATGTTGGGTTCGGAAGATGCTACTTTTCGTTATTTGATTGAATCATTTCCACGGCTTCTATTGTTGTCCTTGGAGCGTCACATGACCCCTGTGGTTGAATATCTTGAAAATATGGGAGTCCGCAGAGAAAGCATGAGAACCATATTTTTGTTATTTCCACCGGTTATATTTTGCAACATTAAAGTCATTACAGCGAGAGTGCGTGCTTTTAAAGAGTTTGGTCTGGAGGATAAAGATGTTGGCAGAATGTTGATTAAATATCCATGGATTCTATCTACAAGCATTCACGAGAACTTCAAGGAGGTTCTTTCTTTCTTTGATTTAGAAAAGGTCCCAAAAGCGAATGTTGGCTGCGCAATCCGAAGCTGGCCTCATATCTTGGGTTGTTCGACTAGCACTCTAAAAGTGATGGTTGAACAGATTGATGAATTGGGTATTGCAAACAAGAAGTTGGGTCAGGTGATCTCTAGAAGTCCTCAGCTACTATTACGGAAACCTAAAGAATTTCTTCAGGTAGTTTCATTCATGGAAGGTCTAGGATTTGATAAAGAAACTGTTGGGACCATACTTGGTCGCTGTCCTGAAATATTTGCTGCCAGCATTGAGAGAACACTTAAGAGAAAGCTGGATTTCCTTGCAAGTATTGGTGTTTCAAAAGTTCACCTTCCTCGGGTTATCAAAAAGTACCCGGAGCTTCTTGTGTCTGACACTGACAGAACTTTGCTTCCTCGGGTGAAGTACCTGATGAAGAAAGGGCTGTCACAGAGGGATATTGCGTTCATGGTCCGCAGATTTTCTCCTTTACTTGGGTACAGCATCGAAGAGGTTTTGCGACCAAAGCTTGAGTTCCTCTTAAACACCATGGAGAAGCCAATAACTGAAGTGGTGGACTATCCGAGATACTTCAGTTATTCATTAGAAAAGAAGATAAAACCAAGGTACTTGGTGCTAAAGGGAAAAAATATCACGTGTAGCTTAAAGGATATGTTGGCTAAAAACGATGAAGAATTCGCTCTTGAGTTTATGAGTGGTGAAAATATGCTCGTCACATCTCCTTCGCTTACACAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

601

Amino Acids

68.01

Weight (kDa)

9.09

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 276 - 582 3.7e-104 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1087
Acc36I ACCTGC 1 cut(s) 684
AccB7I CCANNNNNTGG 1 cut(s) 379
AciI CCGC 6 cut(s) 204, 230, 352, 710, 853, 1519
AcsI RAATTY 4 cut(s) 14, 334, 1235, 1739
AcuI CTGAAG 3 cut(s) 1226, 1621, 1632
AcvI CACGTG 1 cut(s) 1701
AfaI GTAC 4 cut(s) 1418, 1472, 1544, 1673
AfiI CCNNNNNNNGG 4 cut(s) 244, 379, 1402, 1538
AflII CTTAAG 1 cut(s) 1346
AflIII ACRYGT 2 cut(s) 732, 1700
AgeI ACCGGT 1 cut(s) 892
AgsI TTSAA 9 cut(s) 290, 333, 701, 773, 830, 839, 1030, 1148, 1386
AjnI CCWGG 2 cut(s) 372, 550
AloI GAACNNNNNNTCC 4 cut(s) 1441, 1473, 1493, 1525
AluBI AGCT 8 cut(s) 272, 388, 1098, 1213, 1357, 1426, 1573, 1707
AluI AGCT 8 cut(s) 272, 388, 1098, 1213, 1357, 1426, 1573, 1707
Alw26I GTCTC 1 cut(s) 536
Ama87I CYCGRG 2 cut(s) 1401, 1461
AoxI GGCC 1 cut(s) 1100
ApeKI GCWGC 4 cut(s) 216, 260, 1083, 1325
ApoI RAATTY 4 cut(s) 14, 334, 1235, 1739
AsiGI ACCGGT 1 cut(s) 892
Asp700I GAANNNNTTC 2 cut(s) 777, 1239
AspLEI GCGC 2 cut(s) 226, 1088
AspS9I GGNCC 5 cut(s) 235, 370, 1063, 1293, 1516
AsuC2I CCSGG 1 cut(s) 1421
AsuHPI GGTGA 7 cut(s) 31, 179, 467, 1204, 1385, 1477, 1775
AvaI CYCGRG 2 cut(s) 1401, 1461
AvaII GGWCC 5 cut(s) 235, 370, 1063, 1293, 1516
BaeI ACNNNNGTAYC 2 cut(s) 1624, 1657
BanII GRGCYC 1 cut(s) 558
BauI CACGAG 1 cut(s) 1019
BbrPI CACGTG 1 cut(s) 1701
BbsI GAAGAC 1 cut(s) 678
BbvCI CCTCAGC 1 cut(s) 1209
BbvI GCAGC 4 cut(s) 228, 247, 1070, 1312
BccI CCATC 6 cut(s) 94, 183, 198, 359, 602, 1135
BceAI ACGGC 1 cut(s) 800
BcgI CGANNNNNNTGC 2 cut(s) 513, 547
BciT130I CCWGG 2 cut(s) 374, 552
BcnI CCSGG 1 cut(s) 1421
BcoDI GTCTC 1 cut(s) 536
BfaI CTAG 5 cut(s) 342, 714, 1125, 1200, 1268
BfrI CTTAAG 1 cut(s) 1346
BfuAI ACCTGC 1 cut(s) 684
BisI GCNGC 6 cut(s) 204, 217, 261, 711, 1084, 1326
BlsI GCNGC 6 cut(s) 205, 218, 262, 712, 1085, 1327
Bme1390I CCNGG 3 cut(s) 374, 552, 1421
Bme18I GGWCC 5 cut(s) 235, 370, 1063, 1293, 1516
BmeT110I CYCGRG 2 cut(s) 1401, 1461
BmgT120I GGNCC 5 cut(s) 235, 370, 1063, 1293, 1516
BmiI GGNNCC 3 cut(s) 371, 1065, 1294
BmrFI CCNGG 3 cut(s) 374, 552, 1421
BmsI GCATC 3 cut(s) 636, 739, 1557
BpiI GAAGAC 1 cut(s) 678
BpmI CTGGAG 1 cut(s) 977
Bpu10I CCTNAGC 2 cut(s) 444, 1209
BpuEI CTTGAG 2 cut(s) 1595, 1769
BpuMI CCSGG 1 cut(s) 1421
BsaAI YACGTR 1 cut(s) 1701
BsaJI CCNNGG 8 cut(s) 551, 782, 801, 995, 1400, 1460, 1593, 1667
BsaWI WCCGGW 1 cut(s) 892
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 4 cut(s) 244, 379, 1402, 1538
Bse118I RCCGGY 1 cut(s) 892
BseBI CCWGG 2 cut(s) 374, 552
BseDI CCNNGG 8 cut(s) 551, 782, 801, 995, 1400, 1460, 1593, 1667
BseGI GGATG 5 cut(s) 62, 86, 190, 370, 388
BseLI CCNNNNNNNGG 4 cut(s) 244, 379, 1402, 1538
BseMII CTCAG 3 cut(s) 130, 297, 1223
BseRI GAGGAG 1 cut(s) 323
BseXI GCAGC 4 cut(s) 228, 247, 1070, 1312
BseYI CCCAGC 1 cut(s) 212
BshFI GGCC 1 cut(s) 1102
BshTI ACCGGT 1 cut(s) 892
BsiHKCI CYCGRG 2 cut(s) 1401, 1461
BsiSI CCGG 3 cut(s) 233, 893, 1421
BslFI GGGAC 3 cut(s) 627, 1049, 1306
BslI CCNNNNNNNGG 4 cut(s) 244, 379, 1402, 1538
BsmAI GTCTC 1 cut(s) 536
BsmFI GGGAC 3 cut(s) 627, 1049, 1306
BsmI GAATGC 2 cut(s) 529, 1014
BsnI GGCC 1 cut(s) 1102
BsoBI CYCGRG 2 cut(s) 1401, 1461
Bsp1286I GDGCHC 1 cut(s) 558
Bsp143I GATC 1 cut(s) 1194
Bsp19I CCATGG 2 cut(s) 995, 1593
BspACI CCGC 6 cut(s) 204, 230, 352, 710, 853, 1519
BspANI GGCC 1 cut(s) 1102
BspCNI CTCAG 3 cut(s) 129, 298, 1222
BspLI GGNNCC 3 cut(s) 371, 1065, 1294
BspMI ACCTGC 1 cut(s) 684
BspTI CTTAAG 1 cut(s) 1346
BsrFI RCCGGY 1 cut(s) 892
BssAI RCCGGY 1 cut(s) 892
BssECI CCNNGG 8 cut(s) 551, 782, 801, 995, 1400, 1460, 1593, 1667
BssMI GATC 1 cut(s) 1194
BssSI CACGAG 1 cut(s) 1019
BssT1I CCWWGG 4 cut(s) 801, 995, 1593, 1667
Bst2BI CACGAG 1 cut(s) 1019
Bst2UI CCWGG 2 cut(s) 374, 552
Bst4CI ACNGT 1 cut(s) 1288
Bst6I CTCTTC 1 cut(s) 1548
BstAFI CTTAAG 1 cut(s) 1346
BstBAI YACGTR 1 cut(s) 1701
BstC8I GCNNGC 3 cut(s) 936, 1100, 1330
BstDEI CTNAG 4 cut(s) 116, 306, 444, 1209
BstDSI CCRYGG 3 cut(s) 782, 995, 1593
BstF5I GGATG 5 cut(s) 62, 86, 190, 370, 388
BstHHI GCGC 2 cut(s) 226, 1088
BstKTI GATC 1 cut(s) 1197
BstMAI GTCTC 1 cut(s) 536
BstMBI GATC 1 cut(s) 1194
BstMWI GCNNNNNNNGC 4 cut(s) 269, 861, 1570, 1798
BstNI CCWGG 2 cut(s) 374, 552
BstNSI RCATGY 1 cut(s) 736
BstSCI CCNGG 3 cut(s) 372, 550, 1419
BstV1I GCAGC 4 cut(s) 228, 247, 1070, 1312
BstV2I GAAGAC 1 cut(s) 678
BsuRI GGCC 1 cut(s) 1102
BtgI CCRYGG 3 cut(s) 782, 995, 1593
BtsCI GGATG 5 cut(s) 62, 86, 190, 370, 388
BtsIMutI CAGTG 1 cut(s) 1440
BveI ACCTGC 1 cut(s) 684
Cac8I GCNNGC 3 cut(s) 936, 1100, 1330
CfoI GCGC 2 cut(s) 226, 1088
Cfr10I RCCGGY 1 cut(s) 892
Cfr13I GGNCC 5 cut(s) 235, 370, 1063, 1293, 1516
CseI GACGC 1 cut(s) 797
Csp6I GTAC 4 cut(s) 1417, 1471, 1543, 1672
CspAI ACCGGT 1 cut(s) 892
CviAII CATG 7 cut(s) 733, 814, 865, 996, 1258, 1513, 1594
CviQI GTAC 4 cut(s) 1417, 1471, 1543, 1672
DdeI CTNAG 4 cut(s) 116, 306, 444, 1209
DpnI GATC 1 cut(s) 1196
DpnII GATC 1 cut(s) 1194
DraI TTTAAA 2 cut(s) 421, 943
Eam1104I CTCTTC 1 cut(s) 1548
EarI CTCTTC 1 cut(s) 1548
Eco130I CCWWGG 4 cut(s) 801, 995, 1593, 1667
Eco24I GRGCYC 1 cut(s) 558
Eco47I GGWCC 5 cut(s) 235, 370, 1063, 1293, 1516
Eco57I CTGAAG 3 cut(s) 1226, 1621, 1632
Eco72I CACGTG 1 cut(s) 1701
Eco88I CYCGRG 2 cut(s) 1401, 1461
EcoO109I RGGNCCY 1 cut(s) 1063
EcoRI GAATTC 1 cut(s) 1739
EcoRII CCWGG 2 cut(s) 372, 550
EcoT14I CCWWGG 4 cut(s) 801, 995, 1593, 1667
EcoT38I GRGCYC 1 cut(s) 558
ErhI CCWWGG 4 cut(s) 801, 995, 1593, 1667
FaeI CATG 7 cut(s) 736, 817, 868, 999, 1261, 1516, 1597
FalI AAGNNNNNCTT 4 cut(s) 1224, 1256, 1380, 1412
FaqI GGGAC 3 cut(s) 627, 1049, 1306
FatI CATG 7 cut(s) 732, 813, 864, 995, 1257, 1512, 1593
FauI CCCGC 2 cut(s) 237, 345
Fnu4HI GCNGC 6 cut(s) 204, 217, 261, 711, 1084, 1326
FokI GGATG 5 cut(s) 49, 73, 177, 377, 395
FriOI GRGCYC 1 cut(s) 558
Fsp4HI GCNGC 6 cut(s) 204, 217, 261, 711, 1084, 1326
FspBI CTAG 5 cut(s) 342, 714, 1125, 1200, 1268
FspI TGCGCA 1 cut(s) 1087
GlaI GCGC 2 cut(s) 225, 1087
GluI GCNGC 6 cut(s) 204, 217, 261, 711, 1084, 1326
GsaI CCCAGC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 977
HaeIII GGCC 1 cut(s) 1102
HapII CCGG 3 cut(s) 233, 893, 1421
HgaI GACGC 1 cut(s) 797
HhaI GCGC 2 cut(s) 226, 1088
Hin1II CATG 7 cut(s) 736, 817, 868, 999, 1261, 1516, 1597
Hin6I GCGC 2 cut(s) 224, 1086
HinP1I GCGC 2 cut(s) 224, 1086
HindIII AAGCTT 1 cut(s) 1571
HinfI GANTC 5 cut(s) 120, 615, 773, 849, 1000
HpaII CCGG 3 cut(s) 233, 893, 1421
HphI GGTGA 7 cut(s) 31, 179, 467, 1204, 1385, 1477, 1775
Hpy166II GTNNAC 2 cut(s) 1393, 1621
Hpy188I TCNGA 7 cut(s) 119, 247, 307, 745, 1094, 1438, 1629
Hpy188III TCNNGA 8 cut(s) 290, 728, 836, 956, 1019, 1200, 1313, 1748
Hpy8I GTNNAC 2 cut(s) 1393, 1621
Hpy99I CGWCG 2 cut(s) 538, 639
HpyAV CCTTC 9 cut(s) 100, 194, 206, 421, 574, 703, 1256, 1406, 1797
HpyCH4III ACNGT 1 cut(s) 1288
HpyCH4IV ACGT 1 cut(s) 1700
HpyCH4V TGCA 6 cut(s) 524, 649, 679, 906, 1172, 1370
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 861, 1570, 1798
HpyF3I CTNAG 4 cut(s) 116, 306, 444, 1209
HpySE526I ACGT 1 cut(s) 1700
Hsp92II CATG 7 cut(s) 736, 817, 868, 999, 1261, 1516, 1597
HspAI GCGC 2 cut(s) 224, 1086
Kzo9I GATC 1 cut(s) 1194
LmnI GCTCC 3 cut(s) 247, 805, 1423
Lsp1109I GCAGC 4 cut(s) 228, 247, 1070, 1312
LweI GCATC 3 cut(s) 636, 739, 1557
MaeI CTAG 5 cut(s) 342, 714, 1125, 1200, 1268
MaeII ACGT 1 cut(s) 1700
MaeIII GTNAC 4 cut(s) 455, 809, 1491, 1777
MalI GATC 1 cut(s) 1196
MboI GATC 1 cut(s) 1194
MhlI GDGCHC 1 cut(s) 558
MluCI AATT 6 cut(s) 14, 334, 657, 1160, 1235, 1739
MlyI GAGTC 3 cut(s) 114, 609, 858
MmeI TCCRAC 1 cut(s) 360
MroXI GAANNNNTTC 2 cut(s) 777, 1239
MslI CAYNNNNRTG 1 cut(s) 1801
MspCI CTTAAG 1 cut(s) 1346
MspI CCGG 3 cut(s) 233, 893, 1421
MspR9I CCNGG 3 cut(s) 374, 552, 1421
Mva1269I GAATGC 2 cut(s) 529, 1014
MvaI CCWGG 2 cut(s) 374, 552
MwoI GCNNNNNNNGC 4 cut(s) 269, 861, 1570, 1798
NciI CCSGG 1 cut(s) 1421
NcoI CCATGG 2 cut(s) 995, 1593
NdeII GATC 1 cut(s) 1194
NlaIII CATG 7 cut(s) 736, 817, 868, 999, 1261, 1516, 1597
NlaIV GGNNCC 3 cut(s) 371, 1065, 1294
NmuCI GTSAC 4 cut(s) 455, 809, 1491, 1777
NsbI TGCGCA 1 cut(s) 1087
NspI RCATGY 1 cut(s) 736
PciI ACATGT 1 cut(s) 732
PctI GAATGC 2 cut(s) 529, 1014
PdmI GAANNNNTTC 2 cut(s) 777, 1239
PfeI GAWTC 2 cut(s) 773, 1000
PflMI CCANNNNNTGG 1 cut(s) 379
PfoI TCCNGGA 1 cut(s) 372
PinAI ACCGGT 1 cut(s) 892
PkrI GCNGC 6 cut(s) 205, 218, 262, 712, 1085, 1327
PleI GAGTC 3 cut(s) 114, 609, 857
PmaCI CACGTG 1 cut(s) 1701
PmlI CACGTG 1 cut(s) 1701
PpsI GAGTC 3 cut(s) 114, 609, 857
Ppu21I YACGTR 1 cut(s) 1701
PpuMI RGGWCCY 1 cut(s) 1063
PscI ACATGT 1 cut(s) 732
Psp5II RGGWCCY 1 cut(s) 1063
Psp6I CCWGG 2 cut(s) 372, 550
PspCI CACGTG 1 cut(s) 1701
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 2 cut(s) 372, 550
PspN4I GGNNCC 3 cut(s) 371, 1065, 1294
PspPI GGNCC 5 cut(s) 235, 370, 1063, 1293, 1516
PspPPI RGGWCCY 1 cut(s) 1063
RsaI GTAC 4 cut(s) 1418, 1472, 1544, 1673
RsaNI GTAC 4 cut(s) 1417, 1471, 1543, 1672
RseI CAYNNNNRTG 1 cut(s) 1801
SatI GCNGC 6 cut(s) 204, 217, 261, 711, 1084, 1326
Sau3AI GATC 1 cut(s) 1194
Sau96I GGNCC 5 cut(s) 235, 370, 1063, 1293, 1516
SchI GAGTC 3 cut(s) 114, 609, 858
ScrFI CCNGG 3 cut(s) 374, 552, 1421
SduI GDGCHC 1 cut(s) 558
SfaNI GCATC 3 cut(s) 636, 739, 1557
SinI GGWCC 5 cut(s) 235, 370, 1063, 1293, 1516
SmiMI CAYNNNNRTG 1 cut(s) 1801
SmlI CTYRAG 3 cut(s) 1346, 1574, 1748
SmoI CTYRAG 3 cut(s) 1346, 1574, 1748
Sse9I AATT 6 cut(s) 14, 334, 657, 1160, 1235, 1739
SsiI CCGC 6 cut(s) 204, 230, 352, 710, 853, 1519
SspI AATATT 3 cut(s) 520, 588, 1320
SspMI CTAG 5 cut(s) 342, 714, 1125, 1200, 1268
StyD4I CCNGG 3 cut(s) 372, 550, 1419
StyI CCWWGG 4 cut(s) 801, 995, 1593, 1667
TaaI ACNGT 1 cut(s) 1288
TaiI ACGT 1 cut(s) 1703
TaqI TCGA 2 cut(s) 1121, 1551
TasI AATT 6 cut(s) 14, 334, 657, 1160, 1235, 1739
TauI GCSGC 2 cut(s) 206, 713
TfiI GAWTC 2 cut(s) 773, 1000
TscAI CASTG 1 cut(s) 1447
TseFI GTSAC 4 cut(s) 455, 809, 1491, 1777
TseI GCWGC 4 cut(s) 216, 260, 1083, 1325
Tsp45I GTSAC 4 cut(s) 455, 809, 1491, 1777
TspDTI ATGAA 9 cut(s) 530, 684, 1173, 1242, 1246, 1493, 1501, 1635, 1749
TspGWI ACGGA 1 cut(s) 1237
TspRI CASTG 1 cut(s) 1447
Van91I CCANNNNNTGG 1 cut(s) 379
Vha464I CTTAAG 1 cut(s) 1346
VpaK11BI GGWCC 5 cut(s) 235, 370, 1063, 1293, 1516
XapI RAATTY 4 cut(s) 14, 334, 1235, 1739
XbaI TCTAGA 1 cut(s) 1199
XceI RCATGY 1 cut(s) 736
XmnI GAANNNNTTC 2 cut(s) 777, 1239
XspI CTAG 5 cut(s) 342, 714, 1125, 1200, 1268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.