Rw2G038150
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0006549
Physical Location & Seq
Forward (+)
63061146 .. 63065370
4225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G038150.1

Sequence Viewer

Length: 1848 bp
ATGTCCTCCCCCAAATTCCTCTCAATCCCCACAACTCTCACCTTAACTATCAACTTATCCTCATCCCTAAACCCACCCAGAACCCCATCCTTCTTCCCAAACCCCACATTAACTCTCAGACTCCACCTTACCCAAAACCCCAAGAACCCATTTTTCCACACCCCCTCCAAAACCCATCTCCACCTTCACCATCCCCTGCTCGCCGCACCACCCAGCAGCCCTGCGCCCCCGCCGGACCACCAATCGGAGCAAGTCTTGGCTGCCCAAGAAGCTATCTTGGAGTTTCTTCAAGAACTTGGGGTTTCTGAGGAGGAAGCAATCTTTGTTTCTTCAAATTCGCCTAGATATATGCGGGTGTTGGTGGATGGGGTCCAGGAGTTGGATGAGCTTGGGGTGTGGAGAGAGCAGTTGGTTGGGTTTAAAGAGAAGGTCAAGTATTTGGCTAAGGAGAAAGGTGACAATGGCAAGGTTGCGTTTTTGGAGAGTGTGGTTGGGTTGGGTCTATCTTCGGCTATGAATATTGCAAGGCATTCGTCGGCAGAGACACTACCTGGGCTCATTGACAAGGTAAGGGAATTGCATTTCTATCTTCTTCTCTCTTTTTTCGAATATTTTATATGTGAAGGAAATATTCTTTTCTGGCGTAATGATGGGGGACTCATTGGAAAAAATGCTCGTCGTATGATGATGCACCTATCAATTCCTATTGATGAAGACCTGCAACTAACCTTATCCTTCTTTGAAAAGATTGCGGCTAGGCGTGGAGGTCTGGACATGTTGGGTTCGGAAGATGCTACTTTTCGTTATTTGATTGAATCATTTCCACGTCTTCTATTGTTGTCCTTGGAGCGTCACATGACCCCTGTGGTTGAATATCTTGAAAATATGGGAGTCCGCAGAGAAAGCATGAGAACCATATTTTTGTCATTTCCACCGGTTATATTTTGCAACATTAAAGTCATTACAGCGAGAGTGCGTGCTTTTAAAGAGTTTGGTCTGGAGGATAAAGATGTTGGCAGAATGTTGATTAAATATCCATGGATTCTATCTTCAAGCATTCACGAGAACTTCAAAGAGGTTCTTTCTTTCTTTGATTTAGAAAAGGTCCCAAAAGCAAGTGTTGGCTGCGCAATCCGAAGCTGGCCTCATATCTTGGGTTGTTCGACTAGCACTCTAAAAGTGATGGTTGAACAGATTGATGAATTGGGTATTGCAAACAAGAAGTTGGGTCAGGTGATCTCTAGAAGTCCTCAGCTACTATTACGGAAACCTAAAGAATTTCTTCAGGTAGTTTCATTCATGGAAGGTCTAGGATTTGATAAAGAAACTGTTGGGACCATACTTGGTCGCTGTCCTGAAATATTTGCTGCCAGCATTGAGAGAACACTTAAGAGAAAGCTGGATTTCCTTGCAAGTATTGGTGTTTCAAAAGTTCACCTTCCTCGGGTTATCAAAAAGTACCCGGAGCTTCTTGTGTCTGACACTGACAGAACTTTGCTTCCTCGGGTGAAGTACCTGATGAAGAAAGGGCTGTCACAGAGGGATATTGCGTTCATGGTCCGCAGATTTTCTCCTTTAATTGGGTACAGCATCGAAGAGGTTTTGCGACCAAAGCTTGAGTTCCTCTTAAACACCATGGAGAAGCCAATAACAGAAGTGGTGGACTATCCGAGATACTTCAGTTATTCATTAGAAAAGAAGATAAAACCAAGGTACTTGGTGCTGAAGGGAAAAAATATCGCGTGTAGCTTAAAGGATATGTTGGCTAAAAACGATGAAGAATTTGCTCTTGAGTTTATGAGTGGTGAAAATATGCTCGTCACATCTCCTTCGCTTACACAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

615

Amino Acids

69.87

Weight (kDa)

8.92

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 290 - 596 2.3e-104 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1129
Acc36I ACCTGC 1 cut(s) 726
AccB7I CCANNNNNTGG 1 cut(s) 379
AccII CGCG 1 cut(s) 1742
AciI CCGC 6 cut(s) 204, 230, 352, 752, 895, 1561
AcsI RAATTY 4 cut(s) 14, 334, 1277, 1781
AcuI CTGAAG 3 cut(s) 1268, 1663, 1745
AfaI GTAC 4 cut(s) 1460, 1514, 1586, 1715
AfiI CCNNNNNNNGG 4 cut(s) 244, 379, 1444, 1580
AflII CTTAAG 1 cut(s) 1388
AflIII ACRYGT 1 cut(s) 774
AgeI ACCGGT 1 cut(s) 934
AjiI CACGTC 1 cut(s) 827
AjnI CCWGG 2 cut(s) 372, 550
AloI GAACNNNNNNTCC 4 cut(s) 1483, 1515, 1535, 1567
AluBI AGCT 8 cut(s) 272, 388, 1140, 1255, 1399, 1468, 1615, 1749
AluI AGCT 8 cut(s) 272, 388, 1140, 1255, 1399, 1468, 1615, 1749
Alw26I GTCTC 1 cut(s) 536
Ama87I CYCGRG 2 cut(s) 1443, 1503
AoxI GGCC 1 cut(s) 1142
ApeKI GCWGC 4 cut(s) 216, 260, 1125, 1367
ApoI RAATTY 4 cut(s) 14, 334, 1277, 1781
AsiGI ACCGGT 1 cut(s) 934
Asp700I GAANNNNTTC 2 cut(s) 819, 1281
AspLEI GCGC 2 cut(s) 226, 1130
AspS9I GGNCC 5 cut(s) 235, 370, 1105, 1335, 1558
AsuC2I CCSGG 1 cut(s) 1463
AsuHPI GGTGA 7 cut(s) 31, 179, 467, 1246, 1427, 1519, 1817
AsuII TTCGAA 1 cut(s) 606
AvaI CYCGRG 2 cut(s) 1443, 1503
AvaII GGWCC 5 cut(s) 235, 370, 1105, 1335, 1558
BaeI ACNNNNGTAYC 2 cut(s) 1666, 1699
BanII GRGCYC 1 cut(s) 558
BauI CACGAG 1 cut(s) 1061
BbsI GAAGAC 2 cut(s) 720, 821
BbvCI CCTCAGC 1 cut(s) 1251
BbvI GCAGC 4 cut(s) 228, 247, 1112, 1354
BccI CCATC 6 cut(s) 94, 183, 198, 359, 644, 1177
BcgI CGANNNNNNTGC 2 cut(s) 513, 547
BciT130I CCWGG 2 cut(s) 374, 552
BcnI CCSGG 1 cut(s) 1463
BcoDI GTCTC 1 cut(s) 536
BfaI CTAG 5 cut(s) 342, 756, 1167, 1242, 1310
BfrI CTTAAG 1 cut(s) 1388
BfuAI ACCTGC 1 cut(s) 726
BisI GCNGC 6 cut(s) 204, 217, 261, 753, 1126, 1368
BlsI GCNGC 6 cut(s) 205, 218, 262, 754, 1127, 1369
Bme1390I CCNGG 3 cut(s) 374, 552, 1463
Bme18I GGWCC 5 cut(s) 235, 370, 1105, 1335, 1558
BmeT110I CYCGRG 2 cut(s) 1443, 1503
BmgBI CACGTC 1 cut(s) 827
BmgT120I GGNCC 5 cut(s) 235, 370, 1105, 1335, 1558
BmiI GGNNCC 3 cut(s) 371, 1107, 1336
BmrFI CCNGG 3 cut(s) 374, 552, 1463
BmsI GCATC 3 cut(s) 678, 781, 1599
BpiI GAAGAC 2 cut(s) 720, 821
BpmI CTGGAG 1 cut(s) 1019
Bpu10I CCTNAGC 2 cut(s) 444, 1251
Bpu14I TTCGAA 1 cut(s) 606
BpuEI CTTGAG 2 cut(s) 1637, 1811
BpuMI CCSGG 1 cut(s) 1463
BsaJI CCNNGG 7 cut(s) 551, 843, 1037, 1442, 1502, 1635, 1709
BsaWI WCCGGW 1 cut(s) 934
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 4 cut(s) 244, 379, 1444, 1580
Bse118I RCCGGY 1 cut(s) 934
BseBI CCWGG 2 cut(s) 374, 552
BseDI CCNNGG 7 cut(s) 551, 843, 1037, 1442, 1502, 1635, 1709
BseGI GGATG 5 cut(s) 62, 86, 190, 370, 388
BseLI CCNNNNNNNGG 4 cut(s) 244, 379, 1444, 1580
BseMII CTCAG 3 cut(s) 130, 297, 1265
BseRI GAGGAG 1 cut(s) 323
BseXI GCAGC 4 cut(s) 228, 247, 1112, 1354
BseYI CCCAGC 1 cut(s) 212
Bsh1236I CGCG 1 cut(s) 1742
BshFI GGCC 1 cut(s) 1144
BshTI ACCGGT 1 cut(s) 934
BsiHKCI CYCGRG 2 cut(s) 1443, 1503
BsiSI CCGG 3 cut(s) 233, 935, 1463
BslFI GGGAC 3 cut(s) 669, 1091, 1348
BslI CCNNNNNNNGG 4 cut(s) 244, 379, 1444, 1580
BsmAI GTCTC 1 cut(s) 536
BsmFI GGGAC 3 cut(s) 669, 1091, 1348
BsmI GAATGC 2 cut(s) 529, 1056
BsnI GGCC 1 cut(s) 1144
BsoBI CYCGRG 2 cut(s) 1443, 1503
Bsp119I TTCGAA 1 cut(s) 606
Bsp1286I GDGCHC 1 cut(s) 558
Bsp143I GATC 1 cut(s) 1236
Bsp19I CCATGG 2 cut(s) 1037, 1635
BspACI CCGC 6 cut(s) 204, 230, 352, 752, 895, 1561
BspANI GGCC 1 cut(s) 1144
BspCNI CTCAG 3 cut(s) 129, 298, 1264
BspFNI CGCG 1 cut(s) 1742
BspLI GGNNCC 3 cut(s) 371, 1107, 1336
BspMI ACCTGC 1 cut(s) 726
BspT104I TTCGAA 1 cut(s) 606
BspTI CTTAAG 1 cut(s) 1388
BsrFI RCCGGY 1 cut(s) 934
BssAI RCCGGY 1 cut(s) 934
BssECI CCNNGG 7 cut(s) 551, 843, 1037, 1442, 1502, 1635, 1709
BssMI GATC 1 cut(s) 1236
BssSI CACGAG 1 cut(s) 1061
BssT1I CCWWGG 4 cut(s) 843, 1037, 1635, 1709
Bst2BI CACGAG 1 cut(s) 1061
Bst2UI CCWGG 2 cut(s) 374, 552
Bst4CI ACNGT 1 cut(s) 1330
Bst6I CTCTTC 1 cut(s) 1590
BstAFI CTTAAG 1 cut(s) 1388
BstBI TTCGAA 1 cut(s) 606
BstC8I GCNNGC 4 cut(s) 201, 978, 1142, 1372
BstDEI CTNAG 4 cut(s) 116, 306, 444, 1251
BstDSI CCRYGG 2 cut(s) 1037, 1635
BstF5I GGATG 5 cut(s) 62, 86, 190, 370, 388
BstFNI CGCG 1 cut(s) 1742
BstHHI GCGC 2 cut(s) 226, 1130
BstKTI GATC 1 cut(s) 1239
BstMAI GTCTC 1 cut(s) 536
BstMBI GATC 1 cut(s) 1236
BstMWI GCNNNNNNNGC 4 cut(s) 269, 903, 1612, 1840
BstNI CCWGG 2 cut(s) 374, 552
BstNSI RCATGY 1 cut(s) 778
BstSCI CCNGG 3 cut(s) 372, 550, 1461
BstUI CGCG 1 cut(s) 1742
BstV1I GCAGC 4 cut(s) 228, 247, 1112, 1354
BstV2I GAAGAC 2 cut(s) 720, 821
BsuRI GGCC 1 cut(s) 1144
BtgI CCRYGG 2 cut(s) 1037, 1635
BtrI CACGTC 1 cut(s) 827
BtsCI GGATG 5 cut(s) 62, 86, 190, 370, 388
BtsIMutI CAGTG 1 cut(s) 1482
BveI ACCTGC 1 cut(s) 726
Cac8I GCNNGC 4 cut(s) 201, 978, 1142, 1372
CfoI GCGC 2 cut(s) 226, 1130
Cfr10I RCCGGY 1 cut(s) 934
Cfr13I GGNCC 5 cut(s) 235, 370, 1105, 1335, 1558
CseI GACGC 1 cut(s) 839
Csp6I GTAC 4 cut(s) 1459, 1513, 1585, 1714
CspAI ACCGGT 1 cut(s) 934
CviAII CATG 7 cut(s) 775, 856, 907, 1038, 1300, 1555, 1636
CviQI GTAC 4 cut(s) 1459, 1513, 1585, 1714
DdeI CTNAG 4 cut(s) 116, 306, 444, 1251
DpnI GATC 1 cut(s) 1238
DpnII GATC 1 cut(s) 1236
DraI TTTAAA 2 cut(s) 421, 985
Eam1104I CTCTTC 1 cut(s) 1590
EarI CTCTTC 1 cut(s) 1590
Eco130I CCWWGG 4 cut(s) 843, 1037, 1635, 1709
Eco24I GRGCYC 1 cut(s) 558
Eco47I GGWCC 5 cut(s) 235, 370, 1105, 1335, 1558
Eco57I CTGAAG 3 cut(s) 1268, 1663, 1745
Eco88I CYCGRG 2 cut(s) 1443, 1503
EcoO109I RGGNCCY 1 cut(s) 1105
EcoRII CCWGG 2 cut(s) 372, 550
EcoT14I CCWWGG 4 cut(s) 843, 1037, 1635, 1709
EcoT38I GRGCYC 1 cut(s) 558
ErhI CCWWGG 4 cut(s) 843, 1037, 1635, 1709
FaeI CATG 7 cut(s) 778, 859, 910, 1041, 1303, 1558, 1639
FalI AAGNNNNNCTT 6 cut(s) 1065, 1097, 1266, 1298, 1422, 1454
FaqI GGGAC 3 cut(s) 669, 1091, 1348
FatI CATG 7 cut(s) 774, 855, 906, 1037, 1299, 1554, 1635
FauI CCCGC 2 cut(s) 237, 345
Fnu4HI GCNGC 6 cut(s) 204, 217, 261, 753, 1126, 1368
FokI GGATG 5 cut(s) 49, 73, 177, 377, 395
FriOI GRGCYC 1 cut(s) 558
Fsp4HI GCNGC 6 cut(s) 204, 217, 261, 753, 1126, 1368
FspBI CTAG 5 cut(s) 342, 756, 1167, 1242, 1310
FspI TGCGCA 1 cut(s) 1129
GlaI GCGC 2 cut(s) 225, 1129
GluI GCNGC 6 cut(s) 204, 217, 261, 753, 1126, 1368
GsaI CCCAGC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 1019
HaeIII GGCC 1 cut(s) 1144
HapII CCGG 3 cut(s) 233, 935, 1463
HgaI GACGC 1 cut(s) 839
HhaI GCGC 2 cut(s) 226, 1130
Hin1II CATG 7 cut(s) 778, 859, 910, 1041, 1303, 1558, 1639
Hin6I GCGC 2 cut(s) 224, 1128
HinP1I GCGC 2 cut(s) 224, 1128
HindIII AAGCTT 1 cut(s) 1613
HinfI GANTC 5 cut(s) 120, 657, 815, 891, 1042
HpaII CCGG 3 cut(s) 233, 935, 1463
HphI GGTGA 7 cut(s) 31, 179, 467, 1246, 1427, 1519, 1817
Hpy166II GTNNAC 2 cut(s) 1435, 1663
Hpy188I TCNGA 7 cut(s) 119, 247, 307, 787, 1136, 1480, 1671
Hpy188III TCNNGA 8 cut(s) 290, 770, 878, 998, 1061, 1242, 1355, 1790
Hpy8I GTNNAC 2 cut(s) 1435, 1663
Hpy99I CGWCG 2 cut(s) 538, 681
HpyAV CCTTC 9 cut(s) 100, 194, 421, 617, 745, 1298, 1448, 1720, 1839
HpyCH4III ACNGT 1 cut(s) 1330
HpyCH4IV ACGT 1 cut(s) 826
HpyCH4V TGCA 7 cut(s) 524, 580, 691, 721, 948, 1214, 1412
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 903, 1612, 1840
HpyF3I CTNAG 4 cut(s) 116, 306, 444, 1251
HpySE526I ACGT 1 cut(s) 826
Hsp92II CATG 7 cut(s) 778, 859, 910, 1041, 1303, 1558, 1639
HspAI GCGC 2 cut(s) 224, 1128
Kzo9I GATC 1 cut(s) 1236
LmnI GCTCC 3 cut(s) 247, 847, 1465
Lsp1109I GCAGC 4 cut(s) 228, 247, 1112, 1354
LweI GCATC 3 cut(s) 678, 781, 1599
MaeI CTAG 5 cut(s) 342, 756, 1167, 1242, 1310
MaeII ACGT 1 cut(s) 826
MaeIII GTNAC 4 cut(s) 455, 851, 1533, 1819
MalI GATC 1 cut(s) 1238
MboI GATC 1 cut(s) 1236
MhlI GDGCHC 1 cut(s) 558
MluCI AATT 8 cut(s) 14, 334, 575, 699, 1202, 1277, 1578, 1781
MlyI GAGTC 3 cut(s) 114, 651, 900
MmeI TCCRAC 1 cut(s) 360
MroXI GAANNNNTTC 2 cut(s) 819, 1281
MslI CAYNNNNRTG 1 cut(s) 1843
MspCI CTTAAG 1 cut(s) 1388
MspI CCGG 3 cut(s) 233, 935, 1463
MspR9I CCNGG 3 cut(s) 374, 552, 1463
Mva1269I GAATGC 2 cut(s) 529, 1056
MvaI CCWGG 2 cut(s) 374, 552
MvnI CGCG 1 cut(s) 1742
MwoI GCNNNNNNNGC 4 cut(s) 269, 903, 1612, 1840
NciI CCSGG 1 cut(s) 1463
NcoI CCATGG 2 cut(s) 1037, 1635
NdeII GATC 1 cut(s) 1236
NlaIII CATG 7 cut(s) 778, 859, 910, 1041, 1303, 1558, 1639
NlaIV GGNNCC 3 cut(s) 371, 1107, 1336
NmuCI GTSAC 4 cut(s) 455, 851, 1533, 1819
NsbI TGCGCA 1 cut(s) 1129
NspI RCATGY 1 cut(s) 778
NspV TTCGAA 1 cut(s) 606
PciI ACATGT 1 cut(s) 774
PctI GAATGC 2 cut(s) 529, 1056
PdmI GAANNNNTTC 2 cut(s) 819, 1281
PfeI GAWTC 2 cut(s) 815, 1042
PflMI CCANNNNNTGG 1 cut(s) 379
PfoI TCCNGGA 1 cut(s) 372
PinAI ACCGGT 1 cut(s) 934
PkrI GCNGC 6 cut(s) 205, 218, 262, 754, 1127, 1369
PleI GAGTC 3 cut(s) 114, 651, 899
PpsI GAGTC 3 cut(s) 114, 651, 899
PpuMI RGGWCCY 1 cut(s) 1105
PscI ACATGT 1 cut(s) 774
Psp5II RGGWCCY 1 cut(s) 1105
Psp6I CCWGG 2 cut(s) 372, 550
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 2 cut(s) 372, 550
PspN4I GGNNCC 3 cut(s) 371, 1107, 1336
PspPI GGNCC 5 cut(s) 235, 370, 1105, 1335, 1558
PspPPI RGGWCCY 1 cut(s) 1105
RsaI GTAC 4 cut(s) 1460, 1514, 1586, 1715
RsaNI GTAC 4 cut(s) 1459, 1513, 1585, 1714
RseI CAYNNNNRTG 1 cut(s) 1843
SatI GCNGC 6 cut(s) 204, 217, 261, 753, 1126, 1368
Sau3AI GATC 1 cut(s) 1236
Sau96I GGNCC 5 cut(s) 235, 370, 1105, 1335, 1558
SchI GAGTC 3 cut(s) 114, 651, 900
ScrFI CCNGG 3 cut(s) 374, 552, 1463
SduI GDGCHC 1 cut(s) 558
SfaNI GCATC 3 cut(s) 678, 781, 1599
SfuI TTCGAA 1 cut(s) 606
SinI GGWCC 5 cut(s) 235, 370, 1105, 1335, 1558
SmiMI CAYNNNNRTG 1 cut(s) 1843
SmlI CTYRAG 3 cut(s) 1388, 1616, 1790
SmoI CTYRAG 3 cut(s) 1388, 1616, 1790
Sse9I AATT 8 cut(s) 14, 334, 575, 699, 1202, 1277, 1578, 1781
SsiI CCGC 6 cut(s) 204, 230, 352, 752, 895, 1561
SspI AATATT 4 cut(s) 520, 611, 631, 1362
SspMI CTAG 5 cut(s) 342, 756, 1167, 1242, 1310
StyD4I CCNGG 3 cut(s) 372, 550, 1461
StyI CCWWGG 4 cut(s) 843, 1037, 1635, 1709
TaaI ACNGT 1 cut(s) 1330
TaiI ACGT 1 cut(s) 829
TaqI TCGA 3 cut(s) 606, 1163, 1593
TasI AATT 8 cut(s) 14, 334, 575, 699, 1202, 1277, 1578, 1781
TauI GCSGC 2 cut(s) 206, 755
TfiI GAWTC 2 cut(s) 815, 1042
TscAI CASTG 1 cut(s) 1489
TseFI GTSAC 4 cut(s) 455, 851, 1533, 1819
TseI GCWGC 4 cut(s) 216, 260, 1125, 1367
Tsp45I GTSAC 4 cut(s) 455, 851, 1533, 1819
TspDTI ATGAA 9 cut(s) 530, 726, 1215, 1284, 1288, 1535, 1543, 1677, 1791
TspGWI ACGGA 1 cut(s) 1279
TspRI CASTG 1 cut(s) 1489
Van91I CCANNNNNTGG 1 cut(s) 379
Vha464I CTTAAG 1 cut(s) 1388
VpaK11BI GGWCC 5 cut(s) 235, 370, 1105, 1335, 1558
XapI RAATTY 4 cut(s) 14, 334, 1277, 1781
XbaI TCTAGA 1 cut(s) 1241
XceI RCATGY 1 cut(s) 778
XmnI GAANNNNTTC 2 cut(s) 819, 1281
XspI CTAG 5 cut(s) 342, 756, 1167, 1242, 1310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.