Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002345.1

Orthogroup ID

OG0006549

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2581

Gene Structure 2581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002345.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

attgcggctaggcgtggaggtctggacatgttgggttcggaagatgctacttttcgttatttgattgaatcatttccacgtcttctattgttgtccttggagcgtcacatgacccctgtggttgaatatcttgaaaatatgggagtccgcagagaaagcatgagaaccatatttttgttatttccaccggttatattttgcaacattaaagtcattacggcgagagtgcgttcttttaaagagtttggtctggaggataaagatgttggcagaatggtgattaaatatccatggattctatctacaagcattcacgagaacttcaaggaggttctttctttctttgatttagaaaaggtcccaaaagcgagtgttggctgcgcaatccgaagctggcctcatatcttgggttgttcgactagcactctaaaagtgatggttgaacagattgatgaattgggtattgcaaacaagaagttgggtcaggtgatctctagaagtcctcagctactattacggaaacctaaagaatttcttcaggtagtttcattcatggaaggtctaggatttgataaagaaactgttgggaccatacttggtcgctgtcctgaaatatttgctgccagcattgagagaacacttacgagaaagctggatttccttgcaagtattggtgtttcaaaagttcaccttcctcgggttatcaaaaagtacccggagcttcttgtgtctgacactgacagaactttacttcctcgggtgaagtacctgatgaagaaagggctgtcacagagggatattgcgttcatggtccgcagattttctcctttacttgggtacagcatcgaagaggttttgcgaccaaagcttgagttcctcttaaacaccatggagaagccaataacagaagtggtggactatccgagatacttcagttattcattagaaaagaagataaaaccaaggtacttggtgctaaagggaaaaaatatcgcgtgtagcttaaaggatatgttggctaaaaacgatgaagaattcgctcttgagtttatgagtggtgaaaatatgctcgtcacatctccttcgcttacacagcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

366

Amino Acids

41.94

Weight (kDa)

9.37

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78930
fragaria_vesca	FvH4_4g20560 FvH4_6g36600
malus_domestica	MD09G1167200.v1.1 MD09G1167300.v1.1 MD17G1161200.v1.1
prunus_persica	Prupe.3G025200_v2.0.a1 Prupe.3G025200_v2.0.a1 Prupe.3G025200_v2.0.a1 Prupe.3G025200_v2.0.a1 Prupe.3G025200_v2.0.a1 Prupe.3G025200_v2.0.a1
pyrus_communis	pycom09g08480 pycom17g15380
rosa_chinensis	RchiOBHm_Chr2g0149071
rosa_laevigata	RLG00000020366
rosa_multiflora	Rmu_sc0002345.1_g000001 Rmu_sc0007360.1_g000001 Rmu_sc0034832.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098500
rosa_rugosa	Rorug02G0409100
rosa_samantha	Rh2AG468400 Rh2BG481100 Rh2CG454600 Rh2DG489900
rosa_wichuraiana	Rw2G038150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	382
AccII	CGCG	1 cut(s)	995
AciI	CCGC	3 cut(s)	5, 148, 814
AcsI	RAATTY	2 cut(s)	530, 1034
AcuI	CTGAAG	2 cut(s)	521, 916
AfaI	GTAC	4 cut(s)	713, 767, 839, 968
AfiI	CCNNNNNNNGG	2 cut(s)	697, 833
AflIII	ACRYGT	1 cut(s)	27
AgeI	ACCGGT	1 cut(s)	187
AgsI	TTSAA	6 cut(s)	68, 125, 134, 325, 443, 681
AjiI	CACGTC	1 cut(s)	80
AloI	GAACNNNNNNTCC	4 cut(s)	736, 768, 788, 820
AluBI	AGCT	6 cut(s)	393, 508, 652, 721, 868, 1002
AluI	AGCT	6 cut(s)	393, 508, 652, 721, 868, 1002
Ama87I	CYCGRG	2 cut(s)	696, 756
AoxI	GGCC	1 cut(s)	395
ApeKI	GCWGC	2 cut(s)	378, 620
ApoI	RAATTY	2 cut(s)	530, 1034
AsiGI	ACCGGT	1 cut(s)	187
Asp700I	GAANNNNTTC	2 cut(s)	72, 534
AspLEI	GCGC	1 cut(s)	383
AspS9I	GGNCC	3 cut(s)	358, 588, 811
AsuC2I	CCSGG	1 cut(s)	716
AsuHPI	GGTGA	5 cut(s)	289, 499, 680, 772, 1070
AvaI	CYCGRG	2 cut(s)	696, 756
AvaII	GGWCC	3 cut(s)	358, 588, 811
BaeI	ACNNNNGTAYC	2 cut(s)	919, 952
BauI	CACGAG	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	74
BbvCI	CCTCAGC	1 cut(s)	504
BbvI	GCAGC	2 cut(s)	365, 607
BccI	CCATC	1 cut(s)	430
BceAI	ACGGC	1 cut(s)	234
BcnI	CCSGG	1 cut(s)	716
BfaI	CTAG	4 cut(s)	9, 420, 495, 563
BisI	GCNGC	3 cut(s)	6, 379, 621
BlsI	GCNGC	3 cut(s)	7, 380, 622
Bme1390I	CCNGG	1 cut(s)	716
Bme18I	GGWCC	3 cut(s)	358, 588, 811
BmeT110I	CYCGRG	2 cut(s)	696, 756
BmgBI	CACGTC	1 cut(s)	80
BmgT120I	GGNCC	3 cut(s)	358, 588, 811
BmiI	GGNNCC	2 cut(s)	360, 589
BmrFI	CCNGG	1 cut(s)	716
BmsI	GCATC	2 cut(s)	34, 852
BpiI	GAAGAC	1 cut(s)	74
BpmI	CTGGAG	1 cut(s)	272
Bpu10I	CCTNAGC	1 cut(s)	504
BpuEI	CTTGAG	2 cut(s)	890, 1064
BpuMI	CCSGG	1 cut(s)	716
BsaJI	CCNNGG	6 cut(s)	96, 290, 695, 755, 888, 962
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	2 cut(s)	697, 833
Bse118I	RCCGGY	1 cut(s)	187
BseDI	CCNNGG	6 cut(s)	96, 290, 695, 755, 888, 962
BseLI	CCNNNNNNNGG	2 cut(s)	697, 833
BseMII	CTCAG	1 cut(s)	518
BseXI	GCAGC	2 cut(s)	365, 607
Bsh1236I	CGCG	1 cut(s)	995
BshFI	GGCC	1 cut(s)	397
BshTI	ACCGGT	1 cut(s)	187
BsiHKCI	CYCGRG	2 cut(s)	696, 756
BsiSI	CCGG	2 cut(s)	188, 716
BslFI	GGGAC	2 cut(s)	344, 601
BslI	CCNNNNNNNGG	2 cut(s)	697, 833
BsmFI	GGGAC	2 cut(s)	344, 601
BsmI	GAATGC	1 cut(s)	309
BsnI	GGCC	1 cut(s)	397
BsoBI	CYCGRG	2 cut(s)	696, 756
Bsp143I	GATC	1 cut(s)	489
Bsp19I	CCATGG	2 cut(s)	290, 888
BspACI	CCGC	3 cut(s)	5, 148, 814
BspANI	GGCC	1 cut(s)	397
BspCNI	CTCAG	1 cut(s)	517
BspFNI	CGCG	1 cut(s)	995
BspLI	GGNNCC	2 cut(s)	360, 589
BsrFI	RCCGGY	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	6 cut(s)	96, 290, 695, 755, 888, 962
BssMI	GATC	1 cut(s)	489
BssSI	CACGAG	1 cut(s)	314
BssT1I	CCWWGG	4 cut(s)	96, 290, 888, 962
Bst2BI	CACGAG	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	583
Bst6I	CTCTTC	1 cut(s)	843
BstC8I	GCNNGC	2 cut(s)	395, 625
BstDEI	CTNAG	1 cut(s)	504
BstDSI	CCRYGG	2 cut(s)	290, 888
BstFNI	CGCG	1 cut(s)	995
BstHHI	GCGC	1 cut(s)	383
BstKTI	GATC	1 cut(s)	492
BstMBI	GATC	1 cut(s)	489
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 865, 1093
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	714
BstUI	CGCG	1 cut(s)	995
BstV1I	GCAGC	2 cut(s)	365, 607
BstV2I	GAAGAC	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	397
BtgI	CCRYGG	2 cut(s)	290, 888
BtrI	CACGTC	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	735
Cac8I	GCNNGC	2 cut(s)	395, 625
CfoI	GCGC	1 cut(s)	383
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	3 cut(s)	358, 588, 811
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	4 cut(s)	712, 766, 838, 967
CspAI	ACCGGT	1 cut(s)	187
CviAII	CATG	7 cut(s)	28, 109, 160, 291, 553, 808, 889
CviQI	GTAC	4 cut(s)	712, 766, 838, 967
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	1 cut(s)	491
DpnII	GATC	1 cut(s)	489
DraI	TTTAAA	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	843
EarI	CTCTTC	1 cut(s)	843
Eco130I	CCWWGG	4 cut(s)	96, 290, 888, 962
Eco47I	GGWCC	3 cut(s)	358, 588, 811
Eco57I	CTGAAG	2 cut(s)	521, 916
Eco88I	CYCGRG	2 cut(s)	696, 756
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRI	GAATTC	1 cut(s)	1034
EcoT14I	CCWWGG	4 cut(s)	96, 290, 888, 962
ErhI	CCWWGG	4 cut(s)	96, 290, 888, 962
FaeI	CATG	7 cut(s)	31, 112, 163, 294, 556, 811, 892
FalI	AAGNNNNNCTT	4 cut(s)	519, 551, 675, 707
FaqI	GGGAC	2 cut(s)	344, 601
FatI	CATG	7 cut(s)	27, 108, 159, 290, 552, 807, 888
Fnu4HI	GCNGC	3 cut(s)	6, 379, 621
Fsp4HI	GCNGC	3 cut(s)	6, 379, 621
FspBI	CTAG	4 cut(s)	9, 420, 495, 563
FspI	TGCGCA	1 cut(s)	382
GlaI	GCGC	1 cut(s)	382
GluI	GCNGC	3 cut(s)	6, 379, 621
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	1 cut(s)	397
HapII	CCGG	2 cut(s)	188, 716
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	383
Hin1II	CATG	7 cut(s)	31, 112, 163, 294, 556, 811, 892
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HindIII	AAGCTT	1 cut(s)	866
HinfI	GANTC	3 cut(s)	68, 144, 295
HpaII	CCGG	2 cut(s)	188, 716
HphI	GGTGA	5 cut(s)	289, 499, 680, 772, 1070
Hpy166II	GTNNAC	2 cut(s)	688, 916
Hpy188I	TCNGA	4 cut(s)	40, 389, 733, 924
Hpy188III	TCNNGA	7 cut(s)	23, 131, 251, 314, 495, 608, 1043
Hpy8I	GTNNAC	2 cut(s)	688, 916
HpyAV	CCTTC	3 cut(s)	551, 701, 1092
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	3 cut(s)	201, 467, 665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 865, 1093
HpyF3I	CTNAG	1 cut(s)	504
HpySE526I	ACGT	1 cut(s)	79
Hsp92II	CATG	7 cut(s)	31, 112, 163, 294, 556, 811, 892
HspAI	GCGC	1 cut(s)	381
Kzo9I	GATC	1 cut(s)	489
LmnI	GCTCC	2 cut(s)	100, 718
Lsp1109I	GCAGC	2 cut(s)	365, 607
LweI	GCATC	2 cut(s)	34, 852
MaeI	CTAG	4 cut(s)	9, 420, 495, 563
MaeII	ACGT	1 cut(s)	79
MaeIII	GTNAC	3 cut(s)	104, 786, 1072
MalI	GATC	1 cut(s)	491
MboI	GATC	1 cut(s)	489
MboII	GAAGA	7 cut(s)	53, 74, 527, 787, 860, 964, 1043
MluCI	AATT	3 cut(s)	455, 530, 1034
MlyI	GAGTC	1 cut(s)	153
MroXI	GAANNNNTTC	2 cut(s)	72, 534
MseI	TTAA	5 cut(s)	207, 237, 282, 881, 1004
MslI	CAYNNNNRTG	1 cut(s)	1096
MspI	CCGG	2 cut(s)	188, 716
MspR9I	CCNGG	1 cut(s)	716
Mva1269I	GAATGC	1 cut(s)	309
MvnI	CGCG	1 cut(s)	995
MwoI	GCNNNNNNNGC	3 cut(s)	156, 865, 1093
NciI	CCSGG	1 cut(s)	716
NcoI	CCATGG	2 cut(s)	290, 888
NdeII	GATC	1 cut(s)	489
NlaIII	CATG	7 cut(s)	31, 112, 163, 294, 556, 811, 892
NlaIV	GGNNCC	2 cut(s)	360, 589
NmuCI	GTSAC	3 cut(s)	104, 786, 1072
NsbI	TGCGCA	1 cut(s)	382
NspI	RCATGY	1 cut(s)	31
PciI	ACATGT	1 cut(s)	27
PctI	GAATGC	1 cut(s)	309
PdmI	GAANNNNTTC	2 cut(s)	72, 534
PfeI	GAWTC	2 cut(s)	68, 295
PinAI	ACCGGT	1 cut(s)	187
PkrI	GCNGC	3 cut(s)	7, 380, 622
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PpuMI	RGGWCCY	1 cut(s)	358
PscI	ACATGT	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	358
PspN4I	GGNNCC	2 cut(s)	360, 589
PspPI	GGNCC	3 cut(s)	358, 588, 811
PspPPI	RGGWCCY	1 cut(s)	358
RsaI	GTAC	4 cut(s)	713, 767, 839, 968
RsaNI	GTAC	4 cut(s)	712, 766, 838, 967
RseI	CAYNNNNRTG	1 cut(s)	1096
SaqAI	TTAA	5 cut(s)	207, 237, 282, 881, 1004
SatI	GCNGC	3 cut(s)	6, 379, 621
Sau3AI	GATC	1 cut(s)	489
Sau96I	GGNCC	3 cut(s)	358, 588, 811
SchI	GAGTC	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	716
SfaNI	GCATC	2 cut(s)	34, 852
SinI	GGWCC	3 cut(s)	358, 588, 811
SmiMI	CAYNNNNRTG	1 cut(s)	1096
SmlI	CTYRAG	2 cut(s)	869, 1043
SmoI	CTYRAG	2 cut(s)	869, 1043
Sse9I	AATT	3 cut(s)	455, 530, 1034
SsiI	CCGC	3 cut(s)	5, 148, 814
SspI	AATATT	1 cut(s)	615
SspMI	CTAG	4 cut(s)	9, 420, 495, 563
StyD4I	CCNGG	1 cut(s)	714
StyI	CCWWGG	4 cut(s)	96, 290, 888, 962
TaaI	ACNGT	1 cut(s)	583
TaiI	ACGT	1 cut(s)	82
TaqI	TCGA	2 cut(s)	416, 846
TasI	AATT	3 cut(s)	455, 530, 1034
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	68, 295
Tru1I	TTAA	5 cut(s)	207, 237, 282, 881, 1004
Tru9I	TTAA	5 cut(s)	207, 237, 282, 881, 1004
TscAI	CASTG	1 cut(s)	742
TseFI	GTSAC	3 cut(s)	104, 786, 1072
TseI	GCWGC	2 cut(s)	378, 620
Tsp45I	GTSAC	3 cut(s)	104, 786, 1072
TspDTI	ATGAA	7 cut(s)	468, 537, 541, 788, 796, 930, 1044
TspGWI	ACGGA	1 cut(s)	532
TspRI	CASTG	1 cut(s)	742
VpaK11BI	GGWCC	3 cut(s)	358, 588, 811
XapI	RAATTY	2 cut(s)	530, 1034
XbaI	TCTAGA	1 cut(s)	494
XceI	RCATGY	1 cut(s)	31
XmnI	GAANNNNTTC	2 cut(s)	72, 534
XspI	CTAG	4 cut(s)	9, 420, 495, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.