Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006549

Physical Location & Seq

Genomic Coordinates Reverse (-)

13708632 .. 13710965

Gene Structure 2334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1167200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAGAAACATATTTCTGTTATTTCCACCTGTTATTTTTTGCAACATTAAAGTCATCAAAACGAGAGTGCTTGCTTTTAAAGAGGTACCAAAATTGAGTGTTGGCCGTGCAATCAGAAGCTGGCCTCATATTTTGGGTTGCTCAACCAGCATGCTAAAATTGATGGTCGAAGAAATTGGTGAATTGGGTATTAGAAACAAGAAGTTGGGTCAGGTAGTTTCATTCGTGGAAGGTCTAGAATTTGATAAAGAAATAGTTGGGAGCATAATGGGGCGTTGTCCCAAAATATTTGCTGCCAGCATTGGCAAAACTCTCAAGGTGAAGCTGGAATTTCTTGCTAGCATTGGTGTTTCCGAACCCCACCTTCCTCAGGTTATCAAAAAGTATCCAGAGCTTCTCGTCTCTGACACTGATAGAACTTTACTTCCTCGGATGAAATATTTAATGAAGAAAGGGCTGTCGTGGAGGGGTATTGCATTCATGGTCCGCAAATTTTCTCCTTTACTCGGGTATAGCATTGAAGATGTTTTGAGTCCGAAGCTTGAATTCCTCGTGAACACAATGGAGAAACCAGTGACGGATTTGGTGGAGTATCCAAGGACTTCAGTTATTCATTGGAAAAGAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

210

Amino Acids

23.73

Weight (kDa)

9.85

Isoelectric Point (pI)

31.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	28 - 72	7.7e-06	mTERF
mTERF	PF02536	67 - 200	6e-40	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78930
fragaria_vesca	FvH4_4g20560 FvH4_6g36600
malus_domestica	MD09G1167200.v1.1 MD09G1167300.v1.1 MD17G1161200.v1.1
prunus_persica	Prupe.3G025200_v2.0.a1 Prupe.3G025200_v2.0.a1 Prupe.3G025200_v2.0.a1 Prupe.3G025200_v2.0.a1 Prupe.3G025200_v2.0.a1 Prupe.3G025200_v2.0.a1
pyrus_communis	pycom09g08480 pycom17g15380
rosa_chinensis	RchiOBHm_Chr2g0149071
rosa_laevigata	RLG00000020366
rosa_multiflora	Rmu_sc0002345.1_g000001 Rmu_sc0007360.1_g000001 Rmu_sc0034832.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098500
rosa_rugosa	Rorug02G0409100
rosa_samantha	Rh2AG468400 Rh2BG481100 Rh2CG454600 Rh2DG489900
rosa_wichuraiana	Rw2G038150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	85
AccB1I	GGYRCC	1 cut(s)	85
AciI	CCGC	1 cut(s)	487
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	4 cut(s)	239, 329, 491, 545
AcuI	CTGAAG	1 cut(s)	588
AfaI	GTAC	1 cut(s)	87
AfiI	CCNNNNNNNGG	2 cut(s)	370, 506
AgsI	TTSAA	2 cut(s)	521, 545
AloI	GAACNNNNNNTCC	2 cut(s)	409, 441
AluBI	AGCT	4 cut(s)	120, 325, 394, 541
AluI	AGCT	4 cut(s)	120, 325, 394, 541
Alw26I	GTCTC	1 cut(s)	406
AlwNI	CAGNNNCTG	1 cut(s)	120
Ama87I	CYCGRG	1 cut(s)	506
AoxI	GGCC	2 cut(s)	103, 122
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	4 cut(s)	239, 329, 491, 545
Asp718I	GGTACC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	484
AsuHPI	GGTGA	2 cut(s)	191, 331
AsuNHI	GCTAGC	1 cut(s)	338
AvaI	CYCGRG	1 cut(s)	506
AvaII	GGWCC	1 cut(s)	484
AxyI	CCTNAGG	1 cut(s)	369
BanI	GGYRCC	1 cut(s)	85
BauI	CACGAG	1 cut(s)	551
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	1 cut(s)	157
BceAI	ACGGC	1 cut(s)	90
BciVI	GTATCC	2 cut(s)	396, 603
BcoDI	GTCTC	1 cut(s)	406
BfaI	CTAG	2 cut(s)	236, 339
BfuI	GTATCC	2 cut(s)	396, 603
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme18I	GGWCC	1 cut(s)	484
BmeT110I	CYCGRG	1 cut(s)	506
BmgT120I	GGNCC	1 cut(s)	484
BmiI	GGNNCC	1 cut(s)	87
BmtI	GCTAGC	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	299
BsaJI	CCNNGG	2 cut(s)	428, 596
Bsc4I	CCNNNNNNNGG	2 cut(s)	370, 506
Bse1I	ACTGG	1 cut(s)	572
Bse21I	CCTNAGG	1 cut(s)	369
BseDI	CCNNGG	2 cut(s)	428, 596
BseGI	GGATG	1 cut(s)	438
BseLI	CCNNNNNNNGG	2 cut(s)	370, 506
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	1 cut(s)	572
BseXI	GCAGC	1 cut(s)	280
BshFI	GGCC	2 cut(s)	105, 124
BshNI	GGYRCC	1 cut(s)	85
BsiHKCI	CYCGRG	1 cut(s)	506
BslFI	GGGAC	1 cut(s)	264
BslI	CCNNNNNNNGG	2 cut(s)	370, 506
BsmAI	GTCTC	1 cut(s)	406
BsmBI	CGTCTC	1 cut(s)	406
BsmFI	GGGAC	1 cut(s)	264
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	2 cut(s)	105, 124
BsoBI	CYCGRG	1 cut(s)	506
BspACI	CCGC	1 cut(s)	487
BspANI	GGCC	2 cut(s)	105, 124
BspCNI	CTCAG	1 cut(s)	382
BspLI	GGNNCC	1 cut(s)	87
BspOI	GCTAGC	1 cut(s)	342
BspT107I	GGYRCC	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	572
BssECI	CCNNGG	2 cut(s)	428, 596
BssSI	CACGAG	1 cut(s)	551
BssT1I	CCWWGG	1 cut(s)	596
Bst2BI	CACGAG	1 cut(s)	551
BstC8I	GCNNGC	5 cut(s)	72, 122, 152, 298, 340
BstDEI	CTNAG	1 cut(s)	369
BstENI	CCTNNNNNAGG	1 cut(s)	368
BstF5I	GGATG	1 cut(s)	438
BstMAI	GTCTC	1 cut(s)	406
BstMWI	GCNNNNNNNGC	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	280
Bsu36I	CCTNAGG	1 cut(s)	369
BsuI	GTATCC	2 cut(s)	396, 603
BsuRI	GGCC	2 cut(s)	105, 124
BtsCI	GGATG	1 cut(s)	438
BtsIMutI	CAGTG	2 cut(s)	408, 579
Cac8I	GCNNGC	5 cut(s)	72, 122, 152, 298, 340
CaiI	CAGNNNCTG	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	484
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	2 cut(s)	151, 481
CviJI	RGCY	7 cut(s)	105, 120, 124, 325, 394, 457, 541
CviKI_1	RGCY	7 cut(s)	105, 120, 124, 325, 394, 457, 541
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	1 cut(s)	369
DraI	TTTAAA	1 cut(s)	79
EaeI	YGGCCR	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	596
Eco47I	GGWCC	1 cut(s)	484
Eco57I	CTGAAG	1 cut(s)	588
Eco81I	CCTNAGG	1 cut(s)	369
Eco88I	CYCGRG	1 cut(s)	506
EcoNI	CCTNNNNNAGG	1 cut(s)	368
EcoRI	GAATTC	1 cut(s)	545
EcoT14I	CCWWGG	1 cut(s)	596
ErhI	CCWWGG	1 cut(s)	596
Esp3I	CGTCTC	1 cut(s)	406
FaeI	CATG	2 cut(s)	154, 484
FaiI	YATR	6 cut(s)	11, 129, 152, 266, 482, 513
FaqI	GGGAC	1 cut(s)	264
FatI	CATG	2 cut(s)	150, 480
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	1 cut(s)	445
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	2 cut(s)	236, 339
GluI	GCNGC	1 cut(s)	294
HaeIII	GGCC	2 cut(s)	105, 124
Hin1II	CATG	2 cut(s)	154, 484
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	1 cut(s)	532
HphI	GGTGA	2 cut(s)	191, 331
Hpy166II	GTNNAC	1 cut(s)	556
Hpy188I	TCNGA	5 cut(s)	116, 355, 406, 432, 537
Hpy188III	TCNNGA	3 cut(s)	236, 389, 553
Hpy8I	GTNNAC	1 cut(s)	556
HpyAV	CCTTC	2 cut(s)	224, 374
HpyCH4V	TGCA	3 cut(s)	42, 110, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	147
HpyF3I	CTNAG	1 cut(s)	369
Hsp92II	CATG	2 cut(s)	154, 484
KpnI	GGTACC	1 cut(s)	89
LmnI	GCTCC	1 cut(s)	261
LpnPI	CCDG	9 cut(s)	42, 106, 160, 197, 310, 311, 356, 402, 585
Lsp1109I	GCAGC	1 cut(s)	280
MaeI	CTAG	2 cut(s)	236, 339
MaeIII	GTNAC	1 cut(s)	574
MboII	GAAGA	3 cut(s)	182, 460, 533
MluCI	AATT	8 cut(s)	92, 158, 174, 182, 239, 329, 491, 545
MlyI	GAGTC	1 cut(s)	541
MnlI	CCTC	7 cut(s)	76, 135, 378, 438, 459, 560, 617
MseI	TTAA	3 cut(s)	48, 78, 443
Mva1269I	GAATGC	1 cut(s)	476
MwoI	GCNNNNNNNGC	1 cut(s)	147
NheI	GCTAGC	1 cut(s)	338
NlaIII	CATG	2 cut(s)	154, 484
NlaIV	GGNNCC	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	574
NspI	RCATGY	1 cut(s)	154
PaeI	GCATGC	1 cut(s)	154
PctI	GAATGC	1 cut(s)	476
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	1 cut(s)	540
PpsI	GAGTC	1 cut(s)	540
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	484
PstNI	CAGNNNCTG	1 cut(s)	120
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
SaqAI	TTAA	3 cut(s)	48, 78, 443
SatI	GCNGC	1 cut(s)	294
Sau96I	GGNCC	1 cut(s)	484
SchI	GAGTC	1 cut(s)	541
SinI	GGWCC	1 cut(s)	484
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SphI	GCATGC	1 cut(s)	154
Sse9I	AATT	8 cut(s)	92, 158, 174, 182, 239, 329, 491, 545
SsiI	CCGC	1 cut(s)	487
SspI	AATATT	2 cut(s)	288, 440
SspMI	CTAG	2 cut(s)	236, 339
StyI	CCWWGG	1 cut(s)	596
TaqI	TCGA	1 cut(s)	168
TasI	AATT	8 cut(s)	92, 158, 174, 182, 239, 329, 491, 545
Tru1I	TTAA	3 cut(s)	48, 78, 443
Tru9I	TTAA	3 cut(s)	48, 78, 443
TscAI	CASTG	2 cut(s)	415, 579
TseFI	GTSAC	1 cut(s)	574
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	574
TspDTI	ATGAA	5 cut(s)	210, 449, 461, 469, 602
TspGWI	ACGGA	1 cut(s)	593
TspRI	CASTG	2 cut(s)	415, 579
VpaK11BI	GGWCC	1 cut(s)	484
XagI	CCTNNNNNAGG	1 cut(s)	368
XapI	RAATTY	4 cut(s)	239, 329, 491, 545
XbaI	TCTAGA	1 cut(s)	235
XceI	RCATGY	1 cut(s)	154
XspI	CTAG	2 cut(s)	236, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.