Rh2CG454600
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006549
Physical Location & Seq
Forward (+)
61865277 .. 61869891
4615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG454600.1

Sequence Viewer

Length: 1332 bp
ATGTCCTCCCCCAAATTCCTCTTAATCCCCACAACTCTCACCTTAACTATCAACTTATCCTCATCCCTAAACCCACCCAGAACCCCATCCTTCTTCCCAAACCCCACATTAACTCTCAGACTCCACCTTACCCAAAACCCCAAGAACCCATTTTTCCACACCCCCTCCAAAACCCATCTCCACCTTCACCATCCCCTGCTCGCCGCACCACCCAGCAGCCCTGCGCCCCCGCCGGACCACCAATCGGAGCAAGTCTTGGCTGCCCAAGAAGCTATCTTGGAGTTTCTTCAAGAACTTGGGGTTTCTGAGGAGGAAGCAATCTTTGTTTCTTCAAATTCGCCTAGATATATGCGGGTGTTGGTGGATGGGGTCCAGGAGTTGGATGAGCTTGGGGTGTGGAGAGAGCAGTTGGTTGGGTTTAAAGAGAAGGTCAAGTATTTGGCTAAGGAGAAAGGTGACAATGGCAAGGTTGCGTTTTTGGAGAGTGTGGTTGGGTTGGGTCTATCTTCGGCTATGAATATTGCAAGGCATTCGTCGGCAGAGACACTACCTGGGCTCATTGACAAGGTTAAGTATGTGAAGGAAATATTCTTTTCTGGCAGTAATGATGGGGGACTCATTGGAAAAAATGCTCGTCGTATGATGATGCACCTATCAATTCCTATTGATGAAGACCTGCAACTAACCTTATCCTTCTTTGAAAAGATCGCAGCTAGGCGTGGAGGTCTGGACATGTTGGGTTCGGAAGATGCTACTTTTCGTTATTTGATTGAATCATTTCCACGTCTTCTATTGTTGTCCTTGGAGCGTCACATGACCCCTGTGGTTGAATATCTTGAAAATATGGGAGTCCGCAGAGAAAGCATGAGAACCATATTTTTGTTATTTCCACCGGTTATATTTTGCAACATTAAAGTCATTACAGCGAGAGTGCGTGCTTTTAAAGAGTTTGGTCTGGAGGATAAAGATGTTGGCAGAATGTTGATTAAATATCCATGGATTCTATCTACAAGCATTCACGAGAACTTCAAAGAGGTTCTTTCTTTCTTTGATTTAGAAAAGGTCCCAAAAGCGAGTGTTGGCTGCGCAATCCGAAGCTGGCCTCATACCTTGGGTTGTTCGACTAGCACTCTAAAAGTGATGGTTGAACAGATTGATGAATTGGGTATTGCAAACAAGAAGTTGGGTCAGGTGATCTCTAGAAGTCCTCAGCTACTATTACGGAAACCTAAAGAATTTCTTCAGGTGGGTAACTTTTTAGTTTATTCAAATTTTCACATAAATGGTGAAGAATTGAGAAAGCAAATCCTAAATTGCAAGTTCTGCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

443

Amino Acids

49.92

Weight (kDa)

8.65

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 276 - 437 1.6e-35 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1087
Acc36I ACCTGC 1 cut(s) 684
AccB7I CCANNNNNTGG 1 cut(s) 379
AciI CCGC 4 cut(s) 204, 230, 352, 853
AcsI RAATTY 4 cut(s) 14, 334, 1235, 1270
AcuI CTGAAG 1 cut(s) 1226
AfiI CCNNNNNNNGG 2 cut(s) 244, 379
AflIII ACRYGT 1 cut(s) 732
AgeI ACCGGT 1 cut(s) 892
AgsI TTSAA 9 cut(s) 290, 333, 701, 773, 830, 839, 1030, 1148, 1269
AjiI CACGTC 1 cut(s) 785
AjnI CCWGG 2 cut(s) 372, 550
AluBI AGCT 5 cut(s) 272, 388, 713, 1098, 1213
AluI AGCT 5 cut(s) 272, 388, 713, 1098, 1213
Alw26I GTCTC 1 cut(s) 536
AoxI GGCC 1 cut(s) 1100
ApeKI GCWGC 4 cut(s) 216, 260, 710, 1083
ApoI RAATTY 4 cut(s) 14, 334, 1235, 1270
AsiGI ACCGGT 1 cut(s) 892
Asp700I GAANNNNTTC 2 cut(s) 777, 1239
AspLEI GCGC 2 cut(s) 226, 1088
AspS9I GGNCC 3 cut(s) 235, 370, 1063
AsuHPI GGTGA 5 cut(s) 31, 179, 467, 1204, 1298
AvaII GGWCC 3 cut(s) 235, 370, 1063
BanII GRGCYC 1 cut(s) 558
BauI CACGAG 1 cut(s) 1019
BbsI GAAGAC 2 cut(s) 678, 779
BbvCI CCTCAGC 1 cut(s) 1209
BbvI GCAGC 4 cut(s) 228, 247, 722, 1070
BccI CCATC 6 cut(s) 94, 183, 198, 359, 602, 1135
BcgI CGANNNNNNTGC 2 cut(s) 513, 547
BciT130I CCWGG 2 cut(s) 374, 552
BcoDI GTCTC 1 cut(s) 536
BfaI CTAG 4 cut(s) 342, 714, 1125, 1200
BfuAI ACCTGC 1 cut(s) 684
BisI GCNGC 5 cut(s) 204, 217, 261, 711, 1084
BlsI GCNGC 5 cut(s) 205, 218, 262, 712, 1085
Bme1390I CCNGG 2 cut(s) 374, 552
Bme18I GGWCC 3 cut(s) 235, 370, 1063
BmgBI CACGTC 1 cut(s) 785
BmgT120I GGNCC 3 cut(s) 235, 370, 1063
BmiI GGNNCC 2 cut(s) 371, 1065
BmrFI CCNGG 2 cut(s) 374, 552
BmsI GCATC 2 cut(s) 636, 739
BpiI GAAGAC 2 cut(s) 678, 779
BpmI CTGGAG 1 cut(s) 977
Bpu10I CCTNAGC 2 cut(s) 444, 1209
BsaJI CCNNGG 4 cut(s) 551, 801, 995, 1110
BsaWI WCCGGW 1 cut(s) 892
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 379
Bse118I RCCGGY 1 cut(s) 892
BseBI CCWGG 2 cut(s) 374, 552
BseDI CCNNGG 4 cut(s) 551, 801, 995, 1110
BseGI GGATG 5 cut(s) 62, 86, 190, 370, 388
BseLI CCNNNNNNNGG 2 cut(s) 244, 379
BseMII CTCAG 3 cut(s) 130, 297, 1223
BseRI GAGGAG 1 cut(s) 323
BseXI GCAGC 4 cut(s) 228, 247, 722, 1070
BseYI CCCAGC 1 cut(s) 212
BshFI GGCC 1 cut(s) 1102
BshTI ACCGGT 1 cut(s) 892
BsiSI CCGG 2 cut(s) 233, 893
BslFI GGGAC 2 cut(s) 627, 1049
BslI CCNNNNNNNGG 2 cut(s) 244, 379
BsmAI GTCTC 1 cut(s) 536
BsmFI GGGAC 2 cut(s) 627, 1049
BsmI GAATGC 2 cut(s) 529, 1014
BsnI GGCC 1 cut(s) 1102
Bsp1286I GDGCHC 1 cut(s) 558
Bsp143I GATC 2 cut(s) 705, 1194
Bsp19I CCATGG 1 cut(s) 995
BspACI CCGC 4 cut(s) 204, 230, 352, 853
BspANI GGCC 1 cut(s) 1102
BspCNI CTCAG 3 cut(s) 129, 298, 1222
BspLI GGNNCC 2 cut(s) 371, 1065
BspMI ACCTGC 1 cut(s) 684
BsrFI RCCGGY 1 cut(s) 892
BssAI RCCGGY 1 cut(s) 892
BssECI CCNNGG 4 cut(s) 551, 801, 995, 1110
BssMI GATC 2 cut(s) 705, 1194
BssSI CACGAG 1 cut(s) 1019
BssT1I CCWWGG 3 cut(s) 801, 995, 1110
Bst2BI CACGAG 1 cut(s) 1019
Bst2UI CCWGG 2 cut(s) 374, 552
BstAPI GCANNNNNTGC 1 cut(s) 1323
BstC8I GCNNGC 3 cut(s) 201, 936, 1100
BstDEI CTNAG 4 cut(s) 116, 306, 444, 1209
BstDSI CCRYGG 1 cut(s) 995
BstF5I GGATG 5 cut(s) 62, 86, 190, 370, 388
BstHHI GCGC 2 cut(s) 226, 1088
BstKTI GATC 2 cut(s) 708, 1197
BstMAI GTCTC 1 cut(s) 536
BstMBI GATC 2 cut(s) 705, 1194
BstMWI GCNNNNNNNGC 3 cut(s) 269, 861, 1323
BstNI CCWGG 2 cut(s) 374, 552
BstNSI RCATGY 1 cut(s) 736
BstSCI CCNGG 2 cut(s) 372, 550
BstV1I GCAGC 4 cut(s) 228, 247, 722, 1070
BstV2I GAAGAC 2 cut(s) 678, 779
BsuRI GGCC 1 cut(s) 1102
BtgI CCRYGG 1 cut(s) 995
BtrI CACGTC 1 cut(s) 785
BtsCI GGATG 5 cut(s) 62, 86, 190, 370, 388
BveI ACCTGC 1 cut(s) 684
Cac8I GCNNGC 3 cut(s) 201, 936, 1100
CfoI GCGC 2 cut(s) 226, 1088
Cfr10I RCCGGY 1 cut(s) 892
Cfr13I GGNCC 3 cut(s) 235, 370, 1063
CseI GACGC 1 cut(s) 797
CspAI ACCGGT 1 cut(s) 892
CviAII CATG 4 cut(s) 733, 814, 865, 996
DdeI CTNAG 4 cut(s) 116, 306, 444, 1209
DpnI GATC 2 cut(s) 707, 1196
DpnII GATC 2 cut(s) 705, 1194
DraI TTTAAA 2 cut(s) 421, 943
Eco130I CCWWGG 3 cut(s) 801, 995, 1110
Eco24I GRGCYC 1 cut(s) 558
Eco47I GGWCC 3 cut(s) 235, 370, 1063
Eco57I CTGAAG 1 cut(s) 1226
EcoO109I RGGNCCY 1 cut(s) 1063
EcoRII CCWGG 2 cut(s) 372, 550
EcoT14I CCWWGG 3 cut(s) 801, 995, 1110
EcoT38I GRGCYC 1 cut(s) 558
ErhI CCWWGG 3 cut(s) 801, 995, 1110
FaeI CATG 4 cut(s) 736, 817, 868, 999
FalI AAGNNNNNCTT 5 cut(s) 1023, 1055, 1224, 1256, 1310
FaqI GGGAC 2 cut(s) 627, 1049
FatI CATG 4 cut(s) 732, 813, 864, 995
FauI CCCGC 2 cut(s) 237, 345
Fnu4HI GCNGC 5 cut(s) 204, 217, 261, 711, 1084
FokI GGATG 5 cut(s) 49, 73, 177, 377, 395
FriOI GRGCYC 1 cut(s) 558
Fsp4HI GCNGC 5 cut(s) 204, 217, 261, 711, 1084
FspBI CTAG 4 cut(s) 342, 714, 1125, 1200
FspI TGCGCA 1 cut(s) 1087
GlaI GCGC 2 cut(s) 225, 1087
GluI GCNGC 5 cut(s) 204, 217, 261, 711, 1084
GsaI CCCAGC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 977
HaeIII GGCC 1 cut(s) 1102
HapII CCGG 2 cut(s) 233, 893
HgaI GACGC 1 cut(s) 797
HhaI GCGC 2 cut(s) 226, 1088
Hin1II CATG 4 cut(s) 736, 817, 868, 999
Hin6I GCGC 2 cut(s) 224, 1086
HinP1I GCGC 2 cut(s) 224, 1086
HinfI GANTC 5 cut(s) 120, 615, 773, 849, 1000
HpaII CCGG 2 cut(s) 233, 893
HphI GGTGA 5 cut(s) 31, 179, 467, 1204, 1298
Hpy188I TCNGA 5 cut(s) 119, 247, 307, 745, 1094
Hpy188III TCNNGA 6 cut(s) 290, 728, 836, 956, 1019, 1200
Hpy99I CGWCG 2 cut(s) 538, 639
HpyAV CCTTC 5 cut(s) 100, 194, 421, 574, 703
HpyCH4IV ACGT 1 cut(s) 784
HpyCH4V TGCA 6 cut(s) 524, 649, 679, 906, 1172, 1317
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 861, 1323
HpyF3I CTNAG 4 cut(s) 116, 306, 444, 1209
HpySE526I ACGT 1 cut(s) 784
Hsp92II CATG 4 cut(s) 736, 817, 868, 999
HspAI GCGC 2 cut(s) 224, 1086
Kzo9I GATC 2 cut(s) 705, 1194
LmnI GCTCC 2 cut(s) 247, 805
Lsp1109I GCAGC 4 cut(s) 228, 247, 722, 1070
LweI GCATC 2 cut(s) 636, 739
MaeI CTAG 4 cut(s) 342, 714, 1125, 1200
MaeII ACGT 1 cut(s) 784
MaeIII GTNAC 3 cut(s) 455, 809, 1250
MalI GATC 2 cut(s) 707, 1196
MboI GATC 2 cut(s) 705, 1194
MboII GAAGA 9 cut(s) 85, 278, 321, 498, 683, 758, 779, 1232, 1301
MhlI GDGCHC 1 cut(s) 558
MluCI AATT 8 cut(s) 14, 334, 657, 1160, 1235, 1270, 1292, 1312
MlyI GAGTC 3 cut(s) 114, 609, 858
MmeI TCCRAC 1 cut(s) 360
MroXI GAANNNNTTC 2 cut(s) 777, 1239
MseI TTAA 8 cut(s) 23, 44, 110, 420, 570, 912, 942, 987
MslI CAYNNNNRTG 1 cut(s) 1281
MspI CCGG 2 cut(s) 233, 893
MspR9I CCNGG 2 cut(s) 374, 552
Mva1269I GAATGC 2 cut(s) 529, 1014
MvaI CCWGG 2 cut(s) 374, 552
MwoI GCNNNNNNNGC 3 cut(s) 269, 861, 1323
NcoI CCATGG 1 cut(s) 995
NdeII GATC 2 cut(s) 705, 1194
NlaIII CATG 4 cut(s) 736, 817, 868, 999
NlaIV GGNNCC 2 cut(s) 371, 1065
NmuCI GTSAC 2 cut(s) 455, 809
NsbI TGCGCA 1 cut(s) 1087
NspI RCATGY 1 cut(s) 736
PciI ACATGT 1 cut(s) 732
PctI GAATGC 2 cut(s) 529, 1014
PdmI GAANNNNTTC 2 cut(s) 777, 1239
PfeI GAWTC 2 cut(s) 773, 1000
PflMI CCANNNNNTGG 1 cut(s) 379
PfoI TCCNGGA 1 cut(s) 372
PinAI ACCGGT 1 cut(s) 892
PkrI GCNGC 5 cut(s) 205, 218, 262, 712, 1085
PleI GAGTC 3 cut(s) 114, 609, 857
PpsI GAGTC 3 cut(s) 114, 609, 857
PpuMI RGGWCCY 1 cut(s) 1063
PscI ACATGT 1 cut(s) 732
Psp5II RGGWCCY 1 cut(s) 1063
Psp6I CCWGG 2 cut(s) 372, 550
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 2 cut(s) 372, 550
PspN4I GGNNCC 2 cut(s) 371, 1065
PspPI GGNCC 3 cut(s) 235, 370, 1063
PspPPI RGGWCCY 1 cut(s) 1063
RseI CAYNNNNRTG 1 cut(s) 1281
SaqAI TTAA 8 cut(s) 23, 44, 110, 420, 570, 912, 942, 987
SatI GCNGC 5 cut(s) 204, 217, 261, 711, 1084
Sau3AI GATC 2 cut(s) 705, 1194
Sau96I GGNCC 3 cut(s) 235, 370, 1063
SchI GAGTC 3 cut(s) 114, 609, 858
ScrFI CCNGG 2 cut(s) 374, 552
SduI GDGCHC 1 cut(s) 558
SfaNI GCATC 2 cut(s) 636, 739
SinI GGWCC 3 cut(s) 235, 370, 1063
SmiMI CAYNNNNRTG 1 cut(s) 1281
Sse9I AATT 8 cut(s) 14, 334, 657, 1160, 1235, 1270, 1292, 1312
SsiI CCGC 4 cut(s) 204, 230, 352, 853
SspI AATATT 2 cut(s) 520, 588
SspMI CTAG 4 cut(s) 342, 714, 1125, 1200
StyD4I CCNGG 2 cut(s) 372, 550
StyI CCWWGG 3 cut(s) 801, 995, 1110
TaiI ACGT 1 cut(s) 787
TaqI TCGA 1 cut(s) 1121
TasI AATT 8 cut(s) 14, 334, 657, 1160, 1235, 1270, 1292, 1312
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 2 cut(s) 773, 1000
Tru1I TTAA 8 cut(s) 23, 44, 110, 420, 570, 912, 942, 987
Tru9I TTAA 8 cut(s) 23, 44, 110, 420, 570, 912, 942, 987
TseFI GTSAC 2 cut(s) 455, 809
TseI GCWGC 4 cut(s) 216, 260, 710, 1083
Tsp45I GTSAC 2 cut(s) 455, 809
TspDTI ATGAA 3 cut(s) 530, 684, 1173
TspGWI ACGGA 1 cut(s) 1237
Van91I CCANNNNNTGG 1 cut(s) 379
VpaK11BI GGWCC 3 cut(s) 235, 370, 1063
XapI RAATTY 4 cut(s) 14, 334, 1235, 1270
XbaI TCTAGA 1 cut(s) 1199
XceI RCATGY 1 cut(s) 736
XmnI GAANNNNTTC 2 cut(s) 777, 1239
XspI CTAG 4 cut(s) 342, 714, 1125, 1200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.