RLG00000020366
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006549
Physical Location & Seq
Forward (+)
64276749 .. 64281121
4373 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020366

Sequence Viewer

Length: 1815 bp
ATGTCCTCCCCCAAATTCCTCTCAATCCCCACAACCCTCACCTTAACCATCAACTTATCCTCATCCCTAAACCCACCCAGAACCCCATCCTTCTTCCCAAACCCCCCAAACCCCACATTAACTCTCAGACTCCACCTTACCCAAAACCCCAAGAACCCATTTTCCCACACCCCTTCCAAAACCCATCACCACCTTCACCATCCCCAACTCGCCGCACCACCCAGCAGCCCTGCGCCCCCGCCGGACCACGAATCGGAGCAAGTCTTGGCTGCCCAAGAAGCTATCTTGGAGTTTCTTCAAGAACTTGGGGTTTCTGGGGAGGAAGCAATCTTTGTTTCGTTGAATTCTCCGAGATATATGCGGGTGTTGGTGGATGGGGTCCAGGAGTTGGATGAGCTTGGGGTGTGGAGAGAGCAGTTGGTTGGGTTTAAAGAGAAGGTGAAGTATTTGGCTAAGGAGAAAGGTGACAATGGCAAGGTTGCGTTTTTGGAGAGTGTGGTTGGGTTGGGTCTATCTTCGGCTATGAATATTGCTAGGCATTCGTCGGCAGAGACACTACTTGGGTTCATTGACAAGGTTAAGTATGTGAAGGAAATATTCTTTTCTGGCAGTAATGATGGGGGGCTCATTGGAAAAAATGCTCGTCGTATGATGATGCACCTATCAATTCCTATTGATGAAGACCTGCAACTAACCTTATCCTTCTTTGAAAAGATTGCGGCTAGGCGTGGAGGTCTGGACATGTTGGGTTCGGAAGATGCTACTTTTCGTTATTTGATTGAATCATTTCCACGTCTTCTATTGTTGTCCTTGGAGCGTCACATGACCCCTGTGGTTGAATATCTTGAAAATATGGGAGTCCGCAGAGAAAGCATGAGAACCATATTTTTGTTATTTCCACCGGTTATATTTTGCAACATTAAAGTCATTACAGCGAGAGTGCGTGCTTTTAAAGAGTTTGGTCTGGAGGATAAAGATGTTGGCAGAATGTTGATTAAATATCCATGGATTCTATCTACAAGCATTCACGAGAACTTCAAAGAGGTTCTTTCTTTCTTTGATTTAGAAAAGGTCCCAAAAGCGAGTGTTGGCTGTGCAATCAGAAGCTGGCCTCATATCTTGGGTTGTTCAACTAGCACTCTAAAAGTGATGGTTGAACAGATTGATGAATTGGGTATTGCAAACAAAAAGTTGGGTCAGGTGATCTCTAGAAGTCCTCAGCTACTATTACGGAAACCTAAAGAATTTCTTCAGGTAGTTTCATTCATGGAAGGTCTAGGATTTGATAAAGAAACTGTTGGGACCATACTTGGTCGCTGTCCTGAAATATTTGCTGCCAGCATTGAGAGAACACTTAAGAGAAAACTGGATTTCCTTGCAAGTATTGGTGTTTCAAAAGTTCACCTTCCTCGGGTTATCAAAAAGTACCCGGAGCTTCTTGTGTCTGACACTGACAGAACTTTGCTTCCTCGGGTGAAGTACCTGATGAAGAAAGGGCTGTCACGGAGGGATATTGCGTTCATGGTCCGCAGGTTTTCTCCTTTACTTGGGTACAGCATCGAAGAGGTTTTGCGACCAAAGCTTGAGTTCCTCTCAAACACCATGGAGAAGCCGATAACAGAAGTGGTGGACTATCCGAGATACTTCAGTTATTCATTAGAAAAGAAGATAAAACCAAGGTACTTGGTGCTAAAGGGAAAAAATATCGAGTGTAGCTTAAAGGATATGTTGGCTAAAAACGATGAAGAATTTGCTGTTGAGTTTATGAGTGGTGAAAATATGCTTGTCACATCTCCTTCGCCTACACAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

605

Amino Acids

68.28

Weight (kDa)

9.09

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 279 - 585 1.1e-104 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 693, 1521
AccB7I CCANNNNNTGG 1 cut(s) 388
AciI CCGC 6 cut(s) 213, 239, 361, 719, 862, 1528
AcsI RAATTY 4 cut(s) 14, 343, 1244, 1748
AcuI CTGAAG 2 cut(s) 1235, 1630
AfaI GTAC 4 cut(s) 1427, 1481, 1553, 1682
AfiI CCNNNNNNNGG 4 cut(s) 253, 388, 1411, 1547
AflII CTTAAG 1 cut(s) 1355
AflIII ACRYGT 1 cut(s) 741
AgeI ACCGGT 1 cut(s) 901
AjiI CACGTC 1 cut(s) 794
AjnI CCWGG 1 cut(s) 381
AloI GAACNNNNNNTCC 6 cut(s) 146, 178, 1450, 1482, 1502, 1534
AluBI AGCT 7 cut(s) 281, 397, 1107, 1222, 1435, 1582, 1716
AluI AGCT 7 cut(s) 281, 397, 1107, 1222, 1435, 1582, 1716
Alw26I GTCTC 1 cut(s) 545
AlwNI CAGNNNCTG 1 cut(s) 1107
Ama87I CYCGRG 2 cut(s) 1410, 1470
AoxI GGCC 1 cut(s) 1109
ApeKI GCWGC 3 cut(s) 225, 269, 1334
ApoI RAATTY 4 cut(s) 14, 343, 1244, 1748
AsiGI ACCGGT 1 cut(s) 901
Asp700I GAANNNNTTC 2 cut(s) 786, 1248
AspLEI GCGC 1 cut(s) 235
AspS9I GGNCC 5 cut(s) 244, 379, 1072, 1302, 1525
AsuC2I CCSGG 1 cut(s) 1430
AsuHPI GGTGA 9 cut(s) 31, 179, 188, 451, 476, 1213, 1394, 1486, 1784
AvaI CYCGRG 2 cut(s) 1410, 1470
AvaII GGWCC 5 cut(s) 244, 379, 1072, 1302, 1525
BaeI ACNNNNGTAYC 2 cut(s) 1633, 1666
BanII GRGCYC 1 cut(s) 627
BauI CACGAG 1 cut(s) 1028
BbsI GAAGAC 2 cut(s) 687, 788
BbvCI CCTCAGC 1 cut(s) 1218
BbvI GCAGC 3 cut(s) 237, 256, 1321
BccI CCATC 7 cut(s) 56, 94, 192, 207, 368, 611, 1144
BcgI CGANNNNNNTGC 2 cut(s) 340, 374
BciT130I CCWGG 1 cut(s) 383
BcnI CCSGG 1 cut(s) 1430
BcoDI GTCTC 1 cut(s) 545
BfaI CTAG 5 cut(s) 534, 723, 1134, 1209, 1277
BfrI CTTAAG 1 cut(s) 1355
BfuAI ACCTGC 2 cut(s) 693, 1521
BisI GCNGC 5 cut(s) 213, 226, 270, 720, 1335
BlsI GCNGC 5 cut(s) 214, 227, 271, 721, 1336
Bme1390I CCNGG 2 cut(s) 383, 1430
Bme18I GGWCC 5 cut(s) 244, 379, 1072, 1302, 1525
BmeT110I CYCGRG 2 cut(s) 1410, 1470
BmgBI CACGTC 1 cut(s) 794
BmgT120I GGNCC 5 cut(s) 244, 379, 1072, 1302, 1525
BmiI GGNNCC 3 cut(s) 380, 1074, 1303
BmrFI CCNGG 2 cut(s) 383, 1430
BmsI GCATC 3 cut(s) 645, 748, 1566
BpiI GAAGAC 2 cut(s) 687, 788
BplI GAGNNNNNCTC 2 cut(s) 1577, 1609
BpmI CTGGAG 1 cut(s) 986
Bpu10I CCTNAGC 2 cut(s) 453, 1218
BpuEI CTTGAG 1 cut(s) 1604
BpuMI CCSGG 1 cut(s) 1430
BsaJI CCNNGG 6 cut(s) 810, 1004, 1409, 1469, 1602, 1676
BsaWI WCCGGW 1 cut(s) 901
Bsc4I CCNNNNNNNGG 4 cut(s) 253, 388, 1411, 1547
Bse118I RCCGGY 1 cut(s) 901
Bse1I ACTGG 1 cut(s) 1371
BseBI CCWGG 1 cut(s) 383
BseDI CCNNGG 6 cut(s) 810, 1004, 1409, 1469, 1602, 1676
BseGI GGATG 5 cut(s) 62, 86, 199, 379, 397
BseLI CCNNNNNNNGG 4 cut(s) 253, 388, 1411, 1547
BseMII CTCAG 2 cut(s) 139, 1232
BseNI ACTGG 1 cut(s) 1371
BseXI GCAGC 3 cut(s) 237, 256, 1321
BseYI CCCAGC 1 cut(s) 221
BshFI GGCC 1 cut(s) 1111
BshTI ACCGGT 1 cut(s) 901
BsiHKCI CYCGRG 2 cut(s) 1410, 1470
BsiSI CCGG 3 cut(s) 242, 902, 1430
BslFI GGGAC 2 cut(s) 1058, 1315
BslI CCNNNNNNNGG 4 cut(s) 253, 388, 1411, 1547
BsmAI GTCTC 1 cut(s) 545
BsmFI GGGAC 2 cut(s) 1058, 1315
BsmI GAATGC 2 cut(s) 538, 1023
BsnI GGCC 1 cut(s) 1111
BsoBI CYCGRG 2 cut(s) 1410, 1470
Bsp1286I GDGCHC 1 cut(s) 627
Bsp143I GATC 1 cut(s) 1203
Bsp19I CCATGG 2 cut(s) 1004, 1602
BspACI CCGC 6 cut(s) 213, 239, 361, 719, 862, 1528
BspANI GGCC 1 cut(s) 1111
BspCNI CTCAG 2 cut(s) 138, 1231
BspLI GGNNCC 3 cut(s) 380, 1074, 1303
BspMI ACCTGC 2 cut(s) 693, 1521
BspTI CTTAAG 1 cut(s) 1355
BsrFI RCCGGY 1 cut(s) 901
BsrI ACTGG 1 cut(s) 1371
BssAI RCCGGY 1 cut(s) 901
BssECI CCNNGG 6 cut(s) 810, 1004, 1409, 1469, 1602, 1676
BssMI GATC 1 cut(s) 1203
BssSI CACGAG 1 cut(s) 1028
BssT1I CCWWGG 4 cut(s) 810, 1004, 1602, 1676
Bst2BI CACGAG 1 cut(s) 1028
Bst2UI CCWGG 1 cut(s) 383
Bst4CI ACNGT 1 cut(s) 1297
Bst6I CTCTTC 1 cut(s) 1557
BstAFI CTTAAG 1 cut(s) 1355
BstC8I GCNNGC 3 cut(s) 945, 1109, 1339
BstDEI CTNAG 3 cut(s) 125, 453, 1218
BstDSI CCRYGG 2 cut(s) 1004, 1602
BstF5I GGATG 5 cut(s) 62, 86, 199, 379, 397
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 1 cut(s) 1206
BstMAI GTCTC 1 cut(s) 545
BstMBI GATC 1 cut(s) 1203
BstMWI GCNNNNNNNGC 4 cut(s) 278, 870, 1579, 1807
BstNI CCWGG 1 cut(s) 383
BstNSI RCATGY 1 cut(s) 745
BstSCI CCNGG 2 cut(s) 381, 1428
BstV1I GCAGC 3 cut(s) 237, 256, 1321
BstV2I GAAGAC 2 cut(s) 687, 788
BsuRI GGCC 1 cut(s) 1111
BtgI CCRYGG 2 cut(s) 1004, 1602
BtrI CACGTC 1 cut(s) 794
BtsCI GGATG 5 cut(s) 62, 86, 199, 379, 397
BtsIMutI CAGTG 1 cut(s) 1449
BveI ACCTGC 2 cut(s) 693, 1521
Cac8I GCNNGC 3 cut(s) 945, 1109, 1339
CaiI CAGNNNCTG 1 cut(s) 1107
CfoI GCGC 1 cut(s) 235
Cfr10I RCCGGY 1 cut(s) 901
Cfr13I GGNCC 5 cut(s) 244, 379, 1072, 1302, 1525
CseI GACGC 1 cut(s) 806
Csp6I GTAC 4 cut(s) 1426, 1480, 1552, 1681
CspAI ACCGGT 1 cut(s) 901
CviAII CATG 7 cut(s) 742, 823, 874, 1005, 1267, 1522, 1603
CviQI GTAC 4 cut(s) 1426, 1480, 1552, 1681
DdeI CTNAG 3 cut(s) 125, 453, 1218
DpnI GATC 1 cut(s) 1205
DpnII GATC 1 cut(s) 1203
DraI TTTAAA 2 cut(s) 430, 952
Eam1104I CTCTTC 1 cut(s) 1557
EarI CTCTTC 1 cut(s) 1557
Eco130I CCWWGG 4 cut(s) 810, 1004, 1602, 1676
Eco24I GRGCYC 1 cut(s) 627
Eco47I GGWCC 5 cut(s) 244, 379, 1072, 1302, 1525
Eco57I CTGAAG 2 cut(s) 1235, 1630
Eco88I CYCGRG 2 cut(s) 1410, 1470
EcoO109I RGGNCCY 1 cut(s) 1072
EcoRI GAATTC 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 381
EcoT14I CCWWGG 4 cut(s) 810, 1004, 1602, 1676
EcoT38I GRGCYC 1 cut(s) 627
ErhI CCWWGG 4 cut(s) 810, 1004, 1602, 1676
FaeI CATG 7 cut(s) 745, 826, 877, 1008, 1270, 1525, 1606
FalI AAGNNNNNCTT 6 cut(s) 1032, 1064, 1233, 1265, 1389, 1421
FaqI GGGAC 2 cut(s) 1058, 1315
FatI CATG 7 cut(s) 741, 822, 873, 1004, 1266, 1521, 1602
FauI CCCGC 2 cut(s) 246, 354
Fnu4HI GCNGC 5 cut(s) 213, 226, 270, 720, 1335
FokI GGATG 5 cut(s) 49, 73, 186, 386, 404
FriOI GRGCYC 1 cut(s) 627
Fsp4HI GCNGC 5 cut(s) 213, 226, 270, 720, 1335
FspBI CTAG 5 cut(s) 534, 723, 1134, 1209, 1277
GlaI GCGC 1 cut(s) 234
GluI GCNGC 5 cut(s) 213, 226, 270, 720, 1335
GsaI CCCAGC 1 cut(s) 225
GsuI CTGGAG 1 cut(s) 986
HaeIII GGCC 1 cut(s) 1111
HapII CCGG 3 cut(s) 242, 902, 1430
HgaI GACGC 1 cut(s) 806
HhaI GCGC 1 cut(s) 235
Hin1II CATG 7 cut(s) 745, 826, 877, 1008, 1270, 1525, 1606
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HindIII AAGCTT 1 cut(s) 1580
HinfI GANTC 5 cut(s) 129, 251, 782, 858, 1009
HpaII CCGG 3 cut(s) 242, 902, 1430
HphI GGTGA 9 cut(s) 31, 179, 188, 451, 476, 1213, 1394, 1486, 1784
Hpy166II GTNNAC 2 cut(s) 1402, 1630
Hpy188I TCNGA 7 cut(s) 128, 256, 351, 754, 1103, 1447, 1638
Hpy188III TCNNGA 7 cut(s) 299, 737, 845, 965, 1028, 1209, 1322
Hpy8I GTNNAC 2 cut(s) 1402, 1630
Hpy99I CGWCG 2 cut(s) 547, 648
HpyAV CCTTC 9 cut(s) 100, 183, 203, 430, 583, 712, 1265, 1415, 1806
HpyCH4III ACNGT 1 cut(s) 1297
HpyCH4IV ACGT 1 cut(s) 793
HpyCH4V TGCA 6 cut(s) 658, 688, 915, 1097, 1181, 1379
HpyF10VI GCNNNNNNNGC 4 cut(s) 278, 870, 1579, 1807
HpyF3I CTNAG 3 cut(s) 125, 453, 1218
HpySE526I ACGT 1 cut(s) 793
Hsp92II CATG 7 cut(s) 745, 826, 877, 1008, 1270, 1525, 1606
HspAI GCGC 1 cut(s) 233
Kzo9I GATC 1 cut(s) 1203
LmnI GCTCC 3 cut(s) 256, 814, 1432
Lsp1109I GCAGC 3 cut(s) 237, 256, 1321
LweI GCATC 3 cut(s) 645, 748, 1566
MaeI CTAG 5 cut(s) 534, 723, 1134, 1209, 1277
MaeII ACGT 1 cut(s) 793
MaeIII GTNAC 4 cut(s) 464, 818, 1500, 1786
MalI GATC 1 cut(s) 1205
MboI GATC 1 cut(s) 1203
MhlI GDGCHC 1 cut(s) 627
MluCI AATT 6 cut(s) 14, 343, 666, 1169, 1244, 1748
MlyI GAGTC 2 cut(s) 123, 867
MmeI TCCRAC 1 cut(s) 369
MroXI GAANNNNTTC 2 cut(s) 786, 1248
MseI TTAA 9 cut(s) 44, 119, 429, 579, 921, 951, 996, 1356, 1718
MslI CAYNNNNRTG 1 cut(s) 1810
MspCI CTTAAG 1 cut(s) 1355
MspI CCGG 3 cut(s) 242, 902, 1430
MspR9I CCNGG 2 cut(s) 383, 1430
Mva1269I GAATGC 2 cut(s) 538, 1023
MvaI CCWGG 1 cut(s) 383
MwoI GCNNNNNNNGC 4 cut(s) 278, 870, 1579, 1807
NciI CCSGG 1 cut(s) 1430
NcoI CCATGG 2 cut(s) 1004, 1602
NdeII GATC 1 cut(s) 1203
NlaIII CATG 7 cut(s) 745, 826, 877, 1008, 1270, 1525, 1606
NlaIV GGNNCC 3 cut(s) 380, 1074, 1303
NmuCI GTSAC 4 cut(s) 464, 818, 1500, 1786
NspI RCATGY 1 cut(s) 745
PciI ACATGT 1 cut(s) 741
PctI GAATGC 2 cut(s) 538, 1023
PdmI GAANNNNTTC 2 cut(s) 786, 1248
PfeI GAWTC 3 cut(s) 251, 782, 1009
PflMI CCANNNNNTGG 1 cut(s) 388
PfoI TCCNGGA 1 cut(s) 381
PinAI ACCGGT 1 cut(s) 901
PkrI GCNGC 5 cut(s) 214, 227, 271, 721, 1336
PleI GAGTC 2 cut(s) 123, 866
PpsI GAGTC 2 cut(s) 123, 866
PpuMI RGGWCCY 1 cut(s) 1072
PscI ACATGT 1 cut(s) 741
Psp5II RGGWCCY 1 cut(s) 1072
Psp6I CCWGG 1 cut(s) 381
PspFI CCCAGC 1 cut(s) 221
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 3 cut(s) 380, 1074, 1303
PspPI GGNCC 5 cut(s) 244, 379, 1072, 1302, 1525
PspPPI RGGWCCY 1 cut(s) 1072
PstNI CAGNNNCTG 1 cut(s) 1107
RsaI GTAC 4 cut(s) 1427, 1481, 1553, 1682
RsaNI GTAC 4 cut(s) 1426, 1480, 1552, 1681
RseI CAYNNNNRTG 1 cut(s) 1810
SaqAI TTAA 9 cut(s) 44, 119, 429, 579, 921, 951, 996, 1356, 1718
SatI GCNGC 5 cut(s) 213, 226, 270, 720, 1335
Sau3AI GATC 1 cut(s) 1203
Sau96I GGNCC 5 cut(s) 244, 379, 1072, 1302, 1525
SchI GAGTC 2 cut(s) 123, 867
ScrFI CCNGG 2 cut(s) 383, 1430
SduI GDGCHC 1 cut(s) 627
SfaNI GCATC 3 cut(s) 645, 748, 1566
SinI GGWCC 5 cut(s) 244, 379, 1072, 1302, 1525
SmiMI CAYNNNNRTG 1 cut(s) 1810
SmlI CTYRAG 2 cut(s) 1355, 1583
SmoI CTYRAG 2 cut(s) 1355, 1583
Sse9I AATT 6 cut(s) 14, 343, 666, 1169, 1244, 1748
SsiI CCGC 6 cut(s) 213, 239, 361, 719, 862, 1528
SspI AATATT 3 cut(s) 529, 597, 1329
SspMI CTAG 5 cut(s) 534, 723, 1134, 1209, 1277
StyD4I CCNGG 2 cut(s) 381, 1428
StyI CCWWGG 4 cut(s) 810, 1004, 1602, 1676
TaaI ACNGT 1 cut(s) 1297
TaiI ACGT 1 cut(s) 796
TaqI TCGA 2 cut(s) 1560, 1707
TasI AATT 6 cut(s) 14, 343, 666, 1169, 1244, 1748
TauI GCSGC 2 cut(s) 215, 722
TfiI GAWTC 3 cut(s) 251, 782, 1009
Tru1I TTAA 9 cut(s) 44, 119, 429, 579, 921, 951, 996, 1356, 1718
Tru9I TTAA 9 cut(s) 44, 119, 429, 579, 921, 951, 996, 1356, 1718
TscAI CASTG 1 cut(s) 1456
TseFI GTSAC 4 cut(s) 464, 818, 1500, 1786
TseI GCWGC 3 cut(s) 225, 269, 1334
Tsp45I GTSAC 4 cut(s) 464, 818, 1500, 1786
TspGWI ACGGA 2 cut(s) 1246, 1519
TspRI CASTG 1 cut(s) 1456
Van91I CCANNNNNTGG 1 cut(s) 388
Vha464I CTTAAG 1 cut(s) 1355
VpaK11BI GGWCC 5 cut(s) 244, 379, 1072, 1302, 1525
XapI RAATTY 4 cut(s) 14, 343, 1244, 1748
XbaI TCTAGA 1 cut(s) 1208
XceI RCATGY 1 cut(s) 745
XmnI GAANNNNTTC 2 cut(s) 786, 1248
XspI CTAG 5 cut(s) 534, 723, 1134, 1209, 1277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.