RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G16610 AT1G16610 AT1G16610 AT1G16610 AT1G16610 AT1G16610 AT1G16610 AT1G79100 |
| fragaria_vesca | FvH4_3g15770 FvH4_3g15770 FvH4_3g15770 |
| malus_domestica | MD10G1202400.v1.1 |
| prunus_persica | Prupe.4G139800_v2.0.a1 Prupe.4G139800_v2.0.a1 Prupe.4G139800_v2.0.a1 Prupe.4G139800_v2.0.a1 |
| pyrus_communis | pycom05g20140 pycom10g17320 |
| rosa_chinensis | RchiOBHm_Chr5g0026571 |
| rosa_laevigata | RLG00000032936 |
| rosa_multiflora | Rmu_sc0004371.1_g000008 Rmu_sc0006854.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00052910 |
| rosa_rugosa | Rorug05G0093900 |
| rosa_samantha | Rh5AG186800 Rh5BG183800 Rh5CG203700 Rh5DG186100 |
| rosa_wichuraiana | Rw5G016950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 104 |
| AfaI | GTAC | 1 cut(s) | 146 |
| AgsI | TTSAA | 5 cut(s) | 53, 84, 104, 109, 166 |
| AluBI | AGCT | 3 cut(s) | 71, 122, 142 |
| AluI | AGCT | 3 cut(s) | 71, 122, 142 |
| ApeKI | GCWGC | 1 cut(s) | 71 |
| ApoI | RAATTY | 1 cut(s) | 104 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 42 |
| AsuHPI | GGTGA | 1 cut(s) | 47 |
| BbvI | GCAGC | 1 cut(s) | 58 |
| BccI | CCATC | 1 cut(s) | 146 |
| BisI | GCNGC | 1 cut(s) | 72 |
| BlsI | GCNGC | 1 cut(s) | 73 |
| BmsI | GCATC | 2 cut(s) | 82, 115 |
| BseGI | GGATG | 1 cut(s) | 157 |
| BseMII | CTCAG | 1 cut(s) | 120 |
| BseRI | GAGGAG | 1 cut(s) | 102 |
| BseXI | GCAGC | 1 cut(s) | 58 |
| Bsp1407I | TGTACA | 1 cut(s) | 144 |
| Bsp143I | GATC | 1 cut(s) | 64 |
| BspCNI | CTCAG | 1 cut(s) | 121 |
| BsrGI | TGTACA | 1 cut(s) | 144 |
| BssMI | GATC | 1 cut(s) | 64 |
| BstAUI | TGTACA | 1 cut(s) | 144 |
| BstDEI | CTNAG | 1 cut(s) | 129 |
| BstF5I | GGATG | 1 cut(s) | 157 |
| BstKTI | GATC | 1 cut(s) | 67 |
| BstMBI | GATC | 1 cut(s) | 64 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 119 |
| BstV1I | GCAGC | 1 cut(s) | 58 |
| BtsCI | GGATG | 1 cut(s) | 157 |
| Csp6I | GTAC | 1 cut(s) | 145 |
| CviAII | CATG | 2 cut(s) | 47, 148 |
| CviJI | RGCY | 3 cut(s) | 71, 122, 142 |
| CviKI_1 | RGCY | 3 cut(s) | 71, 122, 142 |
| CviQI | GTAC | 1 cut(s) | 145 |
| DdeI | CTNAG | 1 cut(s) | 129 |
| DpnI | GATC | 1 cut(s) | 66 |
| DpnII | GATC | 1 cut(s) | 64 |
| EcoRI | GAATTC | 1 cut(s) | 104 |
| EcoT22I | ATGCAT | 1 cut(s) | 97 |
| FaeI | CATG | 2 cut(s) | 50, 151 |
| FaiI | YATR | 5 cut(s) | 48, 97, 99, 149, 160 |
| FatI | CATG | 2 cut(s) | 46, 147 |
| FauNDI | CATATG | 1 cut(s) | 97 |
| Fnu4HI | GCNGC | 1 cut(s) | 72 |
| FokI | GGATG | 1 cut(s) | 164 |
| Fsp4HI | GCNGC | 1 cut(s) | 72 |
| FspEI | CC | 7 cut(s) | 9, 18, 72, 95, 134, 138, 150 |
| GluI | GCNGC | 1 cut(s) | 72 |
| Hin1II | CATG | 2 cut(s) | 50, 151 |
| HinfI | GANTC | 2 cut(s) | 10, 15 |
| HphI | GGTGA | 1 cut(s) | 47 |
| Hpy188III | TCNNGA | 1 cut(s) | 84 |
| HpyCH4V | TGCA | 1 cut(s) | 95 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 119 |
| HpyF3I | CTNAG | 1 cut(s) | 129 |
| Hsp92II | CATG | 2 cut(s) | 50, 151 |
| Kzo9I | GATC | 1 cut(s) | 64 |
| Lsp1109I | GCAGC | 1 cut(s) | 58 |
| LweI | GCATC | 2 cut(s) | 82, 115 |
| MalI | GATC | 1 cut(s) | 66 |
| MboI | GATC | 1 cut(s) | 64 |
| MboII | GAAGA | 1 cut(s) | 19 |
| MluCI | AATT | 1 cut(s) | 104 |
| MlyI | GAGTC | 1 cut(s) | 24 |
| MnlI | CCTC | 1 cut(s) | 80 |
| Mph1103I | ATGCAT | 1 cut(s) | 97 |
| MroXI | GAANNNNTTC | 1 cut(s) | 42 |
| MspA1I | CMGCKG | 1 cut(s) | 142 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 119 |
| NdeI | CATATG | 1 cut(s) | 97 |
| NdeII | GATC | 1 cut(s) | 64 |
| NlaIII | CATG | 2 cut(s) | 50, 151 |
| NsiI | ATGCAT | 1 cut(s) | 97 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 19 |
| PdmI | GAANNNNTTC | 1 cut(s) | 42 |
| PfeI | GAWTC | 1 cut(s) | 10 |
| PkrI | GCNGC | 1 cut(s) | 73 |
| PleI | GAGTC | 1 cut(s) | 23 |
| PpsI | GAGTC | 1 cut(s) | 23 |
| PvuII | CAGCTG | 1 cut(s) | 142 |
| RsaI | GTAC | 1 cut(s) | 146 |
| RsaNI | GTAC | 1 cut(s) | 145 |
| SatI | GCNGC | 1 cut(s) | 72 |
| Sau3AI | GATC | 1 cut(s) | 64 |
| SchI | GAGTC | 1 cut(s) | 24 |
| SetI | ASST | 3 cut(s) | 73, 124, 144 |
| SfaNI | GCATC | 2 cut(s) | 82, 115 |
| SgeI | CNNG | 8 cut(s) | 26, 35, 59, 68, 80, 96, 121, 160 |
| Sse9I | AATT | 1 cut(s) | 104 |
| TaqI | TCGA | 2 cut(s) | 13, 67 |
| TasI | AATT | 1 cut(s) | 104 |
| TatI | WGTACW | 1 cut(s) | 144 |
| TfiI | GAWTC | 1 cut(s) | 10 |
| TseI | GCWGC | 1 cut(s) | 71 |
| TspDTI | ATGAA | 1 cut(s) | 35 |
| XapI | RAATTY | 1 cut(s) | 104 |
| XmnI | GAANNNNTTC | 1 cut(s) | 42 |
| Zsp2I | ATGCAT | 1 cut(s) | 97 |