Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006854.1

Orthogroup ID

OG0005340

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3300

Gene Structure 3300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006854.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 923 bp

atggcgaagaagccaatccgcggtcggcgctcgccgccttccggctccggctccgcctcatcctcactctcccgctccccttccggttcattctcaggctcttcctcccgctcctcctctcgttcccggtctcgctccaggtcctccgcctcctcctcgtcccgcagcggcagctctcgcagccctagcccccgttcctccaaaagaagtcctggcgctcgacgaggtcgatctcctccaccatcgaaaagggcatctccacctccaaggaaatcttctccggctcatgagtcacttgttcttcacattgataagctttcaaggaatgtgaatgaaggccatttaagagaaatttttggaaactatggtgaagttgtacatgttgagctggcaatggatcgtagtgttaatcttccaaaaggatatggatacgtggagttcaagatgagagcagatgctgaaaaagcactattacacatggatggcggtcaaattgatggtaatgtagttcaagcaaaatttacattatctcagcgtcagaagtcgccacctcctaagcctgttgtgactgctccaaagagagatactgtgaaaactgatggtatcaatgctgataaggatggaccaaagcgtttgagggaagcttctcctcgtcggagaccaccttcaccacgaaggagatctccagtggctcgtagaggtggatctccaagaagaccgctagattctccaccacctcgtcgtcgagcaggttctccttaccgacgcggtgatacatctccaagaaggaggcttatttctccatcccgaggacgttctgggtctccgccaccaaggcggcgatccccagttagggcttctccaagaaggatacgtggcagcccccctgttcgcagacgtggctctcctcccccaaggcgccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

308

Amino Acids

33.68

Weight (kDa)

12.0

Isoelectric Point (pI)

135.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16610 AT1G16610 AT1G16610 AT1G16610 AT1G16610 AT1G16610 AT1G16610 AT1G79100
fragaria_vesca	FvH4_3g15770 FvH4_3g15770 FvH4_3g15770
malus_domestica	MD10G1202400.v1.1
prunus_persica	Prupe.4G139800_v2.0.a1 Prupe.4G139800_v2.0.a1 Prupe.4G139800_v2.0.a1 Prupe.4G139800_v2.0.a1
pyrus_communis	pycom05g20140 pycom10g17320
rosa_chinensis	RchiOBHm_Chr5g0026571
rosa_laevigata	RLG00000032936
rosa_multiflora	Rmu_sc0004371.1_g000008 Rmu_sc0006854.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052910
rosa_rugosa	Rorug05G0093900
rosa_samantha	Rh5AG186800 Rh5BG183800 Rh5CG203700 Rh5DG186100
rosa_wichuraiana	Rw5G016950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	740
AccB1I	GGYRCC	1 cut(s)	918
AccBSI	CCGCTC	2 cut(s)	75, 111
AccII	CGCG	2 cut(s)	21, 768
AclWI	GGATC	3 cut(s)	405, 712, 837
AcsI	RAATTY	2 cut(s)	351, 518
AcyI	GRCGYC	1 cut(s)	919
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	5 cut(s)	20, 41, 809, 852, 853
AflIII	ACRYGT	1 cut(s)	379
AgsI	TTSAA	3 cut(s)	321, 442, 512
AjiI	CACGTC	1 cut(s)	899
AjnI	CCWGG	2 cut(s)	137, 211
AjuI	GAANNNNNNNTTGG	2 cut(s)	259, 291
AluBI	AGCT	4 cut(s)	174, 316, 388, 644
AluI	AGCT	4 cut(s)	174, 316, 388, 644
Alw26I	GTCTC	3 cut(s)	135, 652, 828
AlwI	GGATC	3 cut(s)	405, 712, 837
AlwNI	CAGNNNCTG	1 cut(s)	458
Ama87I	CYCGRG	1 cut(s)	807
AoxI	GGCC	1 cut(s)	337
ApeKI	GCWGC	4 cut(s)	165, 171, 180, 879
ApoI	RAATTY	2 cut(s)	351, 518
AspLEI	GCGC	3 cut(s)	30, 218, 921
AspS9I	GGNCC	2 cut(s)	141, 623
AsuC2I	CCSGG	1 cut(s)	127
AsuHPI	GGTGA	3 cut(s)	380, 660, 782
AvaI	CYCGRG	1 cut(s)	807
AvaII	GGWCC	2 cut(s)	141, 623
BanI	GGYRCC	1 cut(s)	918
BbsI	GAAGAC	1 cut(s)	721
BbvI	GCAGC	4 cut(s)	177, 183, 192, 891
BccI	CCATC	6 cut(s)	250, 476, 491, 593, 614, 811
BciT130I	CCWGG	2 cut(s)	139, 213
BciVI	GTATCC	2 cut(s)	422, 864
BcnI	CCSGG	1 cut(s)	127
BcoDI	GTCTC	3 cut(s)	135, 652, 828
BfaI	CTAG	2 cut(s)	186, 722
BfoI	RGCGCY	3 cut(s)	31, 219, 922
BfuAI	ACCTGC	1 cut(s)	740
BfuI	GTATCC	2 cut(s)	422, 864
BglI	GCCNNNNNGGC	1 cut(s)	835
BglII	AGATCT	1 cut(s)	680
BisI	GCNGC	7 cut(s)	35, 166, 169, 172, 181, 839, 880
BlsI	GCNGC	7 cut(s)	36, 167, 170, 173, 182, 840, 881
Bme1390I	CCNGG	3 cut(s)	127, 139, 213
Bme18I	GGWCC	2 cut(s)	141, 623
BmeT110I	CYCGRG	1 cut(s)	807
BmgBI	CACGTC	1 cut(s)	899
BmgT120I	GGNCC	2 cut(s)	141, 623
BmiI	GGNNCC	3 cut(s)	46, 52, 920
BmrFI	CCNGG	3 cut(s)	127, 139, 213
BmrI	ACTGGG	1 cut(s)	842
BmsI	GCATC	2 cut(s)	263, 445
BmuI	ACTGGG	1 cut(s)	842
BpiI	GAAGAC	1 cut(s)	721
BpmI	CTGGAG	2 cut(s)	121, 669
Bpu10I	CCTNAGC	1 cut(s)	555
BpuMI	CCSGG	1 cut(s)	127
BsaAI	YACGTR	2 cut(s)	433, 875
BsaHI	GRCGYC	1 cut(s)	919
BsaI	GGTCTC	3 cut(s)	135, 652, 828
BsaJI	CCNNGG	5 cut(s)	19, 266, 808, 833, 914
BsaWI	WCCGGW	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	5 cut(s)	20, 41, 809, 852, 853
Bse1I	ACTGG	2 cut(s)	686, 848
Bse3DI	GCAATG	1 cut(s)	399
BseBI	CCWGG	2 cut(s)	139, 213
BseDI	CCNNGG	5 cut(s)	19, 266, 808, 833, 914
BseGI	GGATG	4 cut(s)	59, 487, 625, 803
BseLI	CCNNNNNNNGG	5 cut(s)	20, 41, 809, 852, 853
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	2 cut(s)	108, 545
BseNI	ACTGG	2 cut(s)	686, 848
BseRI	GAGGAG	7 cut(s)	103, 106, 142, 145, 225, 639, 897
BseXI	GCAGC	4 cut(s)	177, 183, 192, 891
Bsh1236I	CGCG	2 cut(s)	21, 768
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	339
BshNI	GGYRCC	1 cut(s)	918
BsiEI	CGRYCG	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	807
BsiSI	CCGG	5 cut(s)	42, 48, 84, 127, 281
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	5 cut(s)	20, 41, 809, 852, 853
BsmAI	GTCTC	3 cut(s)	135, 652, 828
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	339
Bso31I	GGTCTC	3 cut(s)	135, 652, 828
BsoBI	CYCGRG	1 cut(s)	807
Bsp1407I	TGTACA	1 cut(s)	376
Bsp143I	GATC	5 cut(s)	230, 397, 680, 704, 842
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	2 cut(s)	107, 544
BspFNI	CGCG	2 cut(s)	21, 768
BspHI	TCATGA	1 cut(s)	286
BspLI	GGNNCC	3 cut(s)	46, 52, 920
BspMI	ACCTGC	1 cut(s)	740
BspPI	GGATC	3 cut(s)	405, 712, 837
BspQI	GCTCTTC	1 cut(s)	106
BspT107I	GGYRCC	1 cut(s)	918
BspTNI	GGTCTC	3 cut(s)	135, 652, 828
BsrBI	CCGCTC	2 cut(s)	75, 111
BsrDI	GCAATG	1 cut(s)	399
BsrGI	TGTACA	1 cut(s)	376
BsrI	ACTGG	2 cut(s)	686, 848
BssECI	CCNNGG	5 cut(s)	19, 266, 808, 833, 914
BssMI	GATC	5 cut(s)	230, 397, 680, 704, 842
BssNI	GRCGYC	1 cut(s)	919
BssT1I	CCWWGG	3 cut(s)	266, 833, 914
Bst2UI	CCWGG	2 cut(s)	139, 213
Bst4CI	ACNGT	1 cut(s)	589
Bst6I	CTCTTC	1 cut(s)	106
BstACI	GRCGYC	1 cut(s)	919
BstAUI	TGTACA	1 cut(s)	376
BstBAI	YACGTR	2 cut(s)	433, 875
BstC8I	GCNNGC	2 cut(s)	32, 390
BstDEI	CTNAG	3 cut(s)	94, 531, 555
BstDSI	CCRYGG	1 cut(s)	19
BstF5I	GGATG	4 cut(s)	59, 487, 625, 803
BstFNI	CGCG	2 cut(s)	21, 768
BstH2I	RGCGCY	3 cut(s)	31, 219, 922
BstHHI	GCGC	3 cut(s)	30, 218, 921
BstKTI	GATC	5 cut(s)	233, 400, 683, 707, 845
BstMAI	GTCTC	3 cut(s)	135, 652, 828
BstMBI	GATC	5 cut(s)	230, 397, 680, 704, 842
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	9 cut(s)	27, 34, 171, 177, 180, 186, 464, 835, 900
BstNI	CCWGG	2 cut(s)	139, 213
BstNSI	RCATGY	1 cut(s)	383
BstSCI	CCNGG	3 cut(s)	125, 137, 211
BstUI	CGCG	2 cut(s)	21, 768
BstV1I	GCAGC	4 cut(s)	177, 183, 192, 891
BstV2I	GAAGAC	1 cut(s)	721
BstX2I	RGATCY	2 cut(s)	680, 704
BstYI	RGATCY	2 cut(s)	680, 704
BsuI	GTATCC	2 cut(s)	422, 864
BsuRI	GGCC	1 cut(s)	339
BtgI	CCRYGG	1 cut(s)	19
BtrI	CACGTC	1 cut(s)	899
BtsCI	GGATG	4 cut(s)	59, 487, 625, 803
BtsIMutI	CAGTG	1 cut(s)	693
BveI	ACCTGC	1 cut(s)	740
Cac8I	GCNNGC	2 cut(s)	32, 390
CaiI	CAGNNNCTG	1 cut(s)	458
CciI	TCATGA	1 cut(s)	286
CfoI	GCGC	3 cut(s)	30, 218, 921
Cfr13I	GGNCC	2 cut(s)	141, 623
Cfr42I	CCGCGG	1 cut(s)	22
CseI	GACGC	2 cut(s)	524, 774
Csp6I	GTAC	1 cut(s)	377
CviAII	CATG	3 cut(s)	287, 380, 478
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	3 cut(s)	94, 531, 555
DinI	GGCGCC	1 cut(s)	920
DpnI	GATC	5 cut(s)	232, 399, 682, 706, 844
DpnII	GATC	5 cut(s)	230, 397, 680, 704, 842
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
EciI	GGCGGA	3 cut(s)	43, 136, 816
Eco130I	CCWWGG	3 cut(s)	266, 833, 914
Eco31I	GGTCTC	3 cut(s)	135, 652, 828
Eco47I	GGWCC	2 cut(s)	141, 623
Eco88I	CYCGRG	1 cut(s)	807
EcoO109I	RGGNCCY	1 cut(s)	141
EcoRII	CCWGG	2 cut(s)	137, 211
EcoT14I	CCWWGG	3 cut(s)	266, 833, 914
EgeI	GGCGCC	1 cut(s)	920
EheI	GGCGCC	1 cut(s)	920
ErhI	CCWWGG	3 cut(s)	266, 833, 914
FaeI	CATG	3 cut(s)	290, 383, 481
FaiI	YATR	5 cut(s)	288, 366, 381, 426, 479
FalI	AAGNNNNNCTT	2 cut(s)	259, 291
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	3 cut(s)	286, 379, 477
FauI	CCCGC	3 cut(s)	80, 116, 170
Fnu4HI	GCNGC	7 cut(s)	35, 166, 169, 172, 181, 839, 880
FokI	GGATG	4 cut(s)	46, 494, 632, 790
Fsp4HI	GCNGC	7 cut(s)	35, 166, 169, 172, 181, 839, 880
FspBI	CTAG	2 cut(s)	186, 722
GlaI	GCGC	3 cut(s)	29, 217, 920
GluI	GCNGC	7 cut(s)	35, 166, 169, 172, 181, 839, 880
GsuI	CTGGAG	2 cut(s)	121, 669
HaeII	RGCGCY	3 cut(s)	31, 219, 922
HaeIII	GGCC	1 cut(s)	339
HapII	CCGG	5 cut(s)	42, 48, 84, 127, 281
HgaI	GACGC	2 cut(s)	524, 774
HhaI	GCGC	3 cut(s)	30, 218, 921
Hin1I	GRCGYC	1 cut(s)	919
Hin1II	CATG	3 cut(s)	290, 383, 481
Hin6I	GCGC	3 cut(s)	28, 216, 919
HinP1I	GCGC	3 cut(s)	28, 216, 919
HindIII	AAGCTT	2 cut(s)	314, 642
HinfI	GANTC	2 cut(s)	290, 725
HpaII	CCGG	5 cut(s)	42, 48, 84, 127, 281
HphI	GGTGA	3 cut(s)	380, 660, 782
Hpy188I	TCNGA	2 cut(s)	540, 657
Hpy188III	TCNNGA	3 cut(s)	287, 442, 807
Hpy99I	CGWCG	5 cut(s)	225, 657, 744, 747, 768
HpyAV	CCTTC	7 cut(s)	48, 90, 329, 669, 675, 780, 861
HpyCH4III	ACNGT	1 cut(s)	589
HpyCH4IV	ACGT	4 cut(s)	432, 814, 874, 898
HpyF10VI	GCNNNNNNNGC	9 cut(s)	27, 34, 171, 177, 180, 186, 464, 835, 900
HpyF3I	CTNAG	3 cut(s)	94, 531, 555
HpySE526I	ACGT	4 cut(s)	432, 814, 874, 898
Hsp92I	GRCGYC	1 cut(s)	919
Hsp92II	CATG	3 cut(s)	290, 383, 481
HspAI	GCGC	3 cut(s)	28, 216, 919
KasI	GGCGCC	1 cut(s)	918
KspI	CCGCGG	1 cut(s)	22
Kzo9I	GATC	5 cut(s)	230, 397, 680, 704, 842
LguI	GCTCTTC	1 cut(s)	106
LmnI	GCTCC	6 cut(s)	50, 56, 80, 116, 140, 577
Lsp1109I	GCAGC	4 cut(s)	177, 183, 192, 891
LweI	GCATC	2 cut(s)	263, 445
MaeI	CTAG	2 cut(s)	186, 722
MaeII	ACGT	4 cut(s)	432, 814, 874, 898
MaeIII	GTNAC	2 cut(s)	291, 565
MalI	GATC	5 cut(s)	232, 399, 682, 706, 844
MbiI	CCGCTC	2 cut(s)	75, 111
MboI	GATC	5 cut(s)	230, 397, 680, 704, 842
MboII	GAAGA	6 cut(s)	19, 93, 267, 293, 404, 726
MflI	RGATCY	2 cut(s)	680, 704
MluCI	AATT	3 cut(s)	351, 492, 518
Mly113I	GGCGCC	1 cut(s)	919
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	635
MseI	TTAA	2 cut(s)	344, 408
MslI	CAYNNNNRTG	1 cut(s)	480
MspA1I	CMGCKG	2 cut(s)	21, 168
MspI	CCGG	5 cut(s)	42, 48, 84, 127, 281
MspR9I	CCNGG	3 cut(s)	127, 139, 213
MvaI	CCWGG	2 cut(s)	139, 213
MvnI	CGCG	2 cut(s)	21, 768
MwoI	GCNNNNNNNGC	9 cut(s)	27, 34, 171, 177, 180, 186, 464, 835, 900
NarI	GGCGCC	1 cut(s)	919
NciI	CCSGG	1 cut(s)	127
NdeII	GATC	5 cut(s)	230, 397, 680, 704, 842
NlaIII	CATG	3 cut(s)	290, 383, 481
NlaIV	GGNNCC	3 cut(s)	46, 52, 920
NmuCI	GTSAC	2 cut(s)	291, 565
NspI	RCATGY	1 cut(s)	383
PagI	TCATGA	1 cut(s)	286
PciI	ACATGT	1 cut(s)	379
PciSI	GCTCTTC	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	725
PflFI	GACNNNGTC	1 cut(s)	225
PkrI	GCNGC	7 cut(s)	36, 167, 170, 173, 182, 840, 881
PleI	GAGTC	1 cut(s)	298
PluTI	GGCGCC	1 cut(s)	922
PpsI	GAGTC	1 cut(s)	298
Ppu21I	YACGTR	2 cut(s)	433, 875
PpuMI	RGGWCCY	1 cut(s)	141
PscI	ACATGT	1 cut(s)	379
Psp5II	RGGWCCY	1 cut(s)	141
Psp6I	CCWGG	2 cut(s)	137, 211
PspGI	CCWGG	2 cut(s)	137, 211
PspN4I	GGNNCC	3 cut(s)	46, 52, 920
PspPI	GGNCC	2 cut(s)	141, 623
PspPPI	RGGWCCY	1 cut(s)	141
PstNI	CAGNNNCTG	1 cut(s)	458
PsuI	RGATCY	2 cut(s)	680, 704
PsyI	GACNNNGTC	1 cut(s)	225
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
RseI	CAYNNNNRTG	1 cut(s)	480
SacII	CCGCGG	1 cut(s)	22
SapI	GCTCTTC	1 cut(s)	106
SaqAI	TTAA	2 cut(s)	344, 408
SatI	GCNGC	7 cut(s)	35, 166, 169, 172, 181, 839, 880
Sau3AI	GATC	5 cut(s)	230, 397, 680, 704, 842
Sau96I	GGNCC	2 cut(s)	141, 623
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	3 cut(s)	127, 139, 213
SfaNI	GCATC	2 cut(s)	263, 445
SfoI	GGCGCC	1 cut(s)	920
Sfr303I	CCGCGG	1 cut(s)	22
SgrBI	CCGCGG	1 cut(s)	22
SinI	GGWCC	2 cut(s)	141, 623
SmiMI	CAYNNNNRTG	1 cut(s)	480
Sse9I	AATT	3 cut(s)	351, 492, 518
SspDI	GGCGCC	1 cut(s)	918
SspMI	CTAG	2 cut(s)	186, 722
StyD4I	CCNGG	3 cut(s)	125, 137, 211
StyI	CCWWGG	3 cut(s)	266, 833, 914
TaaI	ACNGT	1 cut(s)	589
TaiI	ACGT	4 cut(s)	435, 817, 877, 901
TaqI	TCGA	4 cut(s)	220, 229, 245, 745
TasI	AATT	3 cut(s)	351, 492, 518
TatI	WGTACW	1 cut(s)	376
TauI	GCSGC	3 cut(s)	37, 171, 841
TfiI	GAWTC	1 cut(s)	725
Tru1I	TTAA	2 cut(s)	344, 408
Tru9I	TTAA	2 cut(s)	344, 408
TscAI	CASTG	1 cut(s)	693
TseFI	GTSAC	2 cut(s)	291, 565
TseI	GCWGC	4 cut(s)	165, 171, 180, 879
Tsp45I	GTSAC	2 cut(s)	291, 565
TspDTI	ATGAA	2 cut(s)	78, 348
TspRI	CASTG	1 cut(s)	693
Tth111I	GACNNNGTC	1 cut(s)	225
VpaK11BI	GGWCC	2 cut(s)	141, 623
XapI	RAATTY	2 cut(s)	351, 518
XceI	RCATGY	1 cut(s)	383
XspI	CTAG	2 cut(s)	186, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.