Rroxscaffold_1G00052910

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005340
Physical Location & Seq
Forward (+)
73647369 .. 73653368
6000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00052910.1

Sequence Viewer

Length: 1266 bp
ATGGCGAAGAAGCCAATCCGCGGCCGGCGCTCGCCGCCTTCCGGCTCCGGCTCCGCCTCATCCTCACTCTCCCGCTCCCCTTCCGGTTCATTCTCAGGCTCTTCCTCCCGCTCCTCCTCTCGTTCCCGGTCTCGCTCCAGGTCCTCCGCCTCCTCCTCGTCCCGCAGCGGCAGCTCTCGCAGCCGTAGCCCCCGTTCCTCCAAAAGAAGGAAATCTTCTCCGGCTCATGAGTCACTTGTTCTTCACATTGATAAGCTTTCAAGGAATGTGAATGAAGGCCATTTAAGAGAAATTTTTGGCAACTATGGTGAAGTTGTACATGTTGAGCTGGCAATGGATCGTAGTGTTAATCTTCCAAAAGGATATGGATACGTGGAGTTCAAGATGAGAGCAGATGCTGAAAAAGCACTATTACACATGGATGGCGGTCAAATTGATGGTAATGTAGTTCAAGCAAAATTTACATTATCTCAGCGTCAGAAGTCGCCACCTCCTAAGCCTGTTGTGACTGCTCCCAAGAGAGATACTGTGAAAACTGATGGTATCAATGCTGATAAGGATGGACCAAAGCGTTTGAGGGAAGCTTCTCCTCGTCGGAGACCACCTTCACCACGAAGGAGATCTCCAGTGGCTCGTAGAGGTGGATCTCCAAGAAGACCGCTAGATTCTCCACCACCTCGTCGTCGAGCAGGTTCTCCTTACCGACGTGGTGATACATCTCCAAGAAGGAGGCTTATTTCTCCATCCCGAGGACGTTCTGGGTCTCCGCCACCAAGGCGGCGATCCCCGTTAGGGCTTCTCCAAGAAGGATACGTGGCAGCCCCCCTTTCACCTCCTCCTCGACGGGCTCGTAGTCCTCCGAGAAGGTCTCCAATCAGTCGTAGGCGTAGCCGTTCTCCTCCTATTCGTAGGCCTGCTCGGTCACGTTCAAGATCAATTTCACCACGGAGAGGTCGAGGTCCAGCGACGAGACGTGGGAGGTCATCATCATCTTCCTCTGGATCACCTGGTCCACGCAAGGTAGTCCGGAGGATACCATCTCGTAGTCCAAGAAGTGTACTTCTTTGGTTCTGGTTTATGCATCTTGCTACCATCTGTTTCTGCTTGGCATACTTTGAGCTTTTCTTGCTTGGTAGTCATACTGGCCTGCAAGGGGAAGAAGCAGTAGCAGCAACAGCAGCAGAAGCAGTTCACCTCTTCCTCCTCGGAAGCCATAGGCCTTTACGAGGAAGAAGCAGTAGCAGATCACCCCCTCGTAACCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 map03013 map03015
Pfam Domains
Protein Families
RRM_1

Protein Analysis

421

Amino Acids

46.28

Weight (kDa)

12.0

Isoelectric Point (pI)

128.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 83 - 150 3.1e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 680
AccBSI CCGCTC 2 cut(s) 75, 111
AccII CGCG 1 cut(s) 21
AccIII TCCGGA 1 cut(s) 1026
AclWI GGATC 4 cut(s) 345, 652, 777, 1009
AcoI YGGCCR 1 cut(s) 22
AcsI RAATTY 2 cut(s) 291, 458
AfaI GTAC 2 cut(s) 318, 1059
AfiI CCNNNNNNNGG 8 cut(s) 20, 41, 207, 749, 792, 950, 1153, 1226
AflIII ACRYGT 1 cut(s) 319
AgsI TTSAA 4 cut(s) 261, 382, 452, 930
AjiI CACGTC 2 cut(s) 707, 974
AjnI CCWGG 2 cut(s) 137, 1006
AluBI AGCT 5 cut(s) 174, 256, 328, 584, 1120
AluI AGCT 5 cut(s) 174, 256, 328, 584, 1120
Alw26I GTCTC 5 cut(s) 135, 592, 768, 873, 964
AlwI GGATC 4 cut(s) 345, 652, 777, 1009
AlwNI CAGNNNCTG 1 cut(s) 398
Ama87I CYCGRG 1 cut(s) 747
Aor13HI TCCGGA 1 cut(s) 1026
AoxI GGCC 5 cut(s) 22, 277, 911, 1144, 1217
ApeKI GCWGC 6 cut(s) 165, 171, 180, 818, 1169, 1178
ApoI RAATTY 2 cut(s) 291, 458
Asp700I GAANNNNTTC 1 cut(s) 1188
AspLEI GCGC 1 cut(s) 30
AspS9I GGNCC 4 cut(s) 141, 563, 959, 1010
AsuC2I CCSGG 1 cut(s) 127
AsuHPI GGTGA 8 cut(s) 320, 600, 722, 822, 933, 996, 1184, 1239
AvaI CYCGRG 1 cut(s) 747
AvaII GGWCC 4 cut(s) 141, 563, 959, 1010
BanII GRGCYC 1 cut(s) 850
BbsI GAAGAC 1 cut(s) 661
BbvI GCAGC 6 cut(s) 177, 183, 192, 830, 1181, 1190
BccI CCATC 7 cut(s) 416, 431, 533, 554, 751, 1045, 1100
BceAI ACGGC 2 cut(s) 168, 876
BciT130I CCWGG 2 cut(s) 139, 1008
BciVI GTATCC 3 cut(s) 362, 803, 1026
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 5 cut(s) 135, 592, 768, 873, 964
BfaI CTAG 1 cut(s) 662
BfoI RGCGCY 1 cut(s) 31
BfuAI ACCTGC 1 cut(s) 680
BfuI GTATCC 3 cut(s) 362, 803, 1026
BglI GCCNNNNNGGC 1 cut(s) 775
BglII AGATCT 1 cut(s) 620
Bme1390I CCNGG 3 cut(s) 127, 139, 1008
Bme18I GGWCC 4 cut(s) 141, 563, 959, 1010
BmeT110I CYCGRG 1 cut(s) 747
BmgBI CACGTC 2 cut(s) 707, 974
BmgT120I GGNCC 4 cut(s) 141, 563, 959, 1010
BmiI GGNNCC 2 cut(s) 46, 52
BmrFI CCNGG 3 cut(s) 127, 139, 1008
BmsI GCATC 2 cut(s) 385, 1090
BpiI GAAGAC 1 cut(s) 661
BplI GAGNNNNNCTC 2 cut(s) 853, 885
BpmI CTGGAG 2 cut(s) 121, 609
Bpu10I CCTNAGC 1 cut(s) 495
BpuMI CCSGG 1 cut(s) 127
BsaAI YACGTR 2 cut(s) 373, 814
BsaI GGTCTC 4 cut(s) 135, 592, 768, 873
BsaJI CCNNGG 5 cut(s) 19, 748, 773, 944, 1204
BsaWI WCCGGW 2 cut(s) 83, 1026
Bsc4I CCNNNNNNNGG 8 cut(s) 20, 41, 207, 749, 792, 950, 1153, 1226
Bse118I RCCGGY 1 cut(s) 24
Bse1I ACTGG 2 cut(s) 626, 1147
Bse3DI GCAATG 1 cut(s) 339
BseAI TCCGGA 1 cut(s) 1026
BseBI CCWGG 2 cut(s) 139, 1008
BseDI CCNNGG 5 cut(s) 19, 748, 773, 944, 1204
BseGI GGATG 4 cut(s) 59, 427, 565, 743
BseLI CCNNNNNNNGG 8 cut(s) 20, 41, 207, 749, 792, 950, 1153, 1226
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 2 cut(s) 108, 485
BseNI ACTGG 2 cut(s) 626, 1147
BseRI GAGGAG 9 cut(s) 103, 106, 142, 145, 579, 825, 828, 888, 1193
BseX3I CGGCCG 1 cut(s) 22
BseXI GCAGC 6 cut(s) 177, 183, 192, 830, 1181, 1190
Bsh1236I CGCG 1 cut(s) 21
Bsh1285I CGRYCG 1 cut(s) 25
BshFI GGCC 5 cut(s) 24, 279, 913, 1146, 1219
BsiEI CGRYCG 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 747
BsiSI CCGG 7 cut(s) 25, 42, 48, 84, 127, 221, 1027
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 8 cut(s) 20, 41, 207, 749, 792, 950, 1153, 1226
BsmAI GTCTC 5 cut(s) 135, 592, 768, 873, 964
BsmBI CGTCTC 1 cut(s) 964
BsmFI GGGAC 1 cut(s) 145
BsnI GGCC 5 cut(s) 24, 279, 913, 1146, 1219
Bso31I GGTCTC 4 cut(s) 135, 592, 768, 873
BsoBI CYCGRG 1 cut(s) 747
Bsp1286I GDGCHC 1 cut(s) 850
Bsp13I TCCGGA 1 cut(s) 1026
Bsp1407I TGTACA 1 cut(s) 316
Bsp143I GATC 7 cut(s) 337, 620, 644, 782, 932, 1001, 1244
BspANI GGCC 5 cut(s) 24, 279, 913, 1146, 1219
BspCNI CTCAG 2 cut(s) 107, 484
BspEI TCCGGA 1 cut(s) 1026
BspFNI CGCG 1 cut(s) 21
BspHI TCATGA 1 cut(s) 226
BspLI GGNNCC 2 cut(s) 46, 52
BspMI ACCTGC 1 cut(s) 680
BspPI GGATC 4 cut(s) 345, 652, 777, 1009
BspQI GCTCTTC 1 cut(s) 106
BspTNI GGTCTC 4 cut(s) 135, 592, 768, 873
BsrBI CCGCTC 2 cut(s) 75, 111
BsrDI GCAATG 1 cut(s) 339
BsrFI RCCGGY 1 cut(s) 24
BsrGI TGTACA 1 cut(s) 316
BsrI ACTGG 2 cut(s) 626, 1147
BssAI RCCGGY 1 cut(s) 24
BssECI CCNNGG 5 cut(s) 19, 748, 773, 944, 1204
BssMI GATC 7 cut(s) 337, 620, 644, 782, 932, 1001, 1244
BssT1I CCWWGG 1 cut(s) 773
Bst2UI CCWGG 2 cut(s) 139, 1008
Bst4CI ACNGT 1 cut(s) 529
Bst6I CTCTTC 2 cut(s) 106, 1202
BstAUI TGTACA 1 cut(s) 316
BstBAI YACGTR 2 cut(s) 373, 814
BstC8I GCNNGC 5 cut(s) 26, 32, 330, 915, 1148
BstDEI CTNAG 3 cut(s) 94, 471, 495
BstDSI CCRYGG 2 cut(s) 19, 944
BstENI CCTNNNNNAGG 1 cut(s) 1224
BstF5I GGATG 4 cut(s) 59, 427, 565, 743
BstFNI CGCG 1 cut(s) 21
BstH2I RGCGCY 1 cut(s) 31
BstHHI GCGC 1 cut(s) 30
BstKTI GATC 7 cut(s) 340, 623, 647, 785, 935, 1004, 1247
BstMAI GTCTC 5 cut(s) 135, 592, 768, 873, 964
BstMBI GATC 7 cut(s) 337, 620, 644, 782, 932, 1001, 1244
BstMCI CGRYCG 1 cut(s) 25
BstNI CCWGG 2 cut(s) 139, 1008
BstNSI RCATGY 1 cut(s) 323
BstSCI CCNGG 3 cut(s) 125, 137, 1006
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 6 cut(s) 177, 183, 192, 830, 1181, 1190
BstV2I GAAGAC 1 cut(s) 661
BstX2I RGATCY 2 cut(s) 620, 644
BstYI RGATCY 2 cut(s) 620, 644
BstZI CGGCCG 1 cut(s) 22
BsuI GTATCC 3 cut(s) 362, 803, 1026
BsuRI GGCC 5 cut(s) 24, 279, 913, 1146, 1219
BtgI CCRYGG 2 cut(s) 19, 944
BtrI CACGTC 2 cut(s) 707, 974
BtsCI GGATG 4 cut(s) 59, 427, 565, 743
BtsIMutI CAGTG 1 cut(s) 633
BveI ACCTGC 1 cut(s) 680
Cac8I GCNNGC 5 cut(s) 26, 32, 330, 915, 1148
CaiI CAGNNNCTG 1 cut(s) 398
CciI TCATGA 1 cut(s) 226
CfoI GCGC 1 cut(s) 30
Cfr10I RCCGGY 1 cut(s) 24
Cfr13I GGNCC 4 cut(s) 141, 563, 959, 1010
Cfr42I CCGCGG 1 cut(s) 22
CseI GACGC 1 cut(s) 464
CsiI ACCWGGT 1 cut(s) 1006
Csp6I GTAC 2 cut(s) 317, 1058
CviAII CATG 3 cut(s) 227, 320, 418
CviQI GTAC 2 cut(s) 317, 1058
DdeI CTNAG 3 cut(s) 94, 471, 495
DpnI GATC 7 cut(s) 339, 622, 646, 784, 934, 1003, 1246
DpnII GATC 7 cut(s) 337, 620, 644, 782, 932, 1001, 1244
EaeI YGGCCR 1 cut(s) 22
EagI CGGCCG 1 cut(s) 22
Eam1104I CTCTTC 2 cut(s) 106, 1202
EarI CTCTTC 2 cut(s) 106, 1202
EciI GGCGGA 3 cut(s) 43, 136, 756
EclXI CGGCCG 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 773
Eco147I AGGCCT 2 cut(s) 913, 1219
Eco24I GRGCYC 1 cut(s) 850
Eco31I GGTCTC 4 cut(s) 135, 592, 768, 873
Eco47I GGWCC 4 cut(s) 141, 563, 959, 1010
Eco52I CGGCCG 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 747
EcoNI CCTNNNNNAGG 1 cut(s) 1224
EcoO109I RGGNCCY 1 cut(s) 141
EcoRII CCWGG 2 cut(s) 137, 1006
EcoT14I CCWWGG 1 cut(s) 773
EcoT22I ATGCAT 1 cut(s) 1083
EcoT38I GRGCYC 1 cut(s) 850
ErhI CCWWGG 1 cut(s) 773
Esp3I CGTCTC 1 cut(s) 964
FaeI CATG 3 cut(s) 230, 323, 421
FalI AAGNNNNNCTT 2 cut(s) 199, 231
FaqI GGGAC 1 cut(s) 145
FatI CATG 3 cut(s) 226, 319, 417
FauI CCCGC 3 cut(s) 80, 116, 170
FokI GGATG 4 cut(s) 46, 434, 572, 730
FriOI GRGCYC 1 cut(s) 850
FspBI CTAG 1 cut(s) 662
GlaI GCGC 1 cut(s) 29
GsuI CTGGAG 2 cut(s) 121, 609
HaeII RGCGCY 1 cut(s) 31
HaeIII GGCC 5 cut(s) 24, 279, 913, 1146, 1219
HapII CCGG 7 cut(s) 25, 42, 48, 84, 127, 221, 1027
HgaI GACGC 1 cut(s) 464
HhaI GCGC 1 cut(s) 30
Hin1II CATG 3 cut(s) 230, 323, 421
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HindIII AAGCTT 2 cut(s) 254, 582
HinfI GANTC 2 cut(s) 230, 665
HpaII CCGG 7 cut(s) 25, 42, 48, 84, 127, 221, 1027
HphI GGTGA 8 cut(s) 320, 600, 722, 822, 933, 996, 1184, 1239
Hpy166II GTNNAC 3 cut(s) 1013, 1058, 1192
Hpy188I TCNGA 4 cut(s) 480, 597, 861, 1208
Hpy188III TCNNGA 6 cut(s) 227, 382, 747, 930, 999, 1027
Hpy8I GTNNAC 3 cut(s) 1013, 1058, 1192
Hpy99I CGWCG 6 cut(s) 597, 684, 687, 708, 846, 970
HpyAV CCTTC 9 cut(s) 48, 90, 201, 269, 609, 615, 720, 800, 858
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4IV ACGT 6 cut(s) 372, 706, 754, 813, 925, 973
HpyCH4V TGCA 2 cut(s) 1081, 1150
HpyF3I CTNAG 3 cut(s) 94, 471, 495
HpySE526I ACGT 6 cut(s) 372, 706, 754, 813, 925, 973
Hsp92II CATG 3 cut(s) 230, 323, 421
HspAI GCGC 1 cut(s) 28
Kpn2I TCCGGA 1 cut(s) 1026
KroI GCCGGC 1 cut(s) 24
KroNI GCCGGC 1 cut(s) 26
KspI CCGCGG 1 cut(s) 22
Kzo9I GATC 7 cut(s) 337, 620, 644, 782, 932, 1001, 1244
LguI GCTCTTC 1 cut(s) 106
LmnI GCTCC 6 cut(s) 50, 56, 80, 116, 140, 517
Lsp1109I GCAGC 6 cut(s) 177, 183, 192, 830, 1181, 1190
LweI GCATC 2 cut(s) 385, 1090
MabI ACCWGGT 1 cut(s) 1006
MaeI CTAG 1 cut(s) 662
MaeII ACGT 6 cut(s) 372, 706, 754, 813, 925, 973
MaeIII GTNAC 4 cut(s) 231, 505, 921, 1256
MalI GATC 7 cut(s) 339, 622, 646, 784, 934, 1003, 1246
MbiI CCGCTC 2 cut(s) 75, 111
MboI GATC 7 cut(s) 337, 620, 644, 782, 932, 1001, 1244
MflI RGATCY 2 cut(s) 620, 644
MhlI GDGCHC 1 cut(s) 850
MluCI AATT 4 cut(s) 291, 432, 458, 936
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 1 cut(s) 575
Mph1103I ATGCAT 1 cut(s) 1083
MroI TCCGGA 1 cut(s) 1026
MroNI GCCGGC 1 cut(s) 24
MroXI GAANNNNTTC 1 cut(s) 1188
MseI TTAA 2 cut(s) 284, 348
MslI CAYNNNNRTG 1 cut(s) 420
MspA1I CMGCKG 2 cut(s) 21, 168
MspI CCGG 7 cut(s) 25, 42, 48, 84, 127, 221, 1027
MspR9I CCNGG 3 cut(s) 127, 139, 1008
MvaI CCWGG 2 cut(s) 139, 1008
MvnI CGCG 1 cut(s) 21
NaeI GCCGGC 1 cut(s) 26
NciI CCSGG 1 cut(s) 127
NdeII GATC 7 cut(s) 337, 620, 644, 782, 932, 1001, 1244
NgoMIV GCCGGC 1 cut(s) 24
NlaIII CATG 3 cut(s) 230, 323, 421
NlaIV GGNNCC 2 cut(s) 46, 52
NmuCI GTSAC 3 cut(s) 231, 505, 921
NsiI ATGCAT 1 cut(s) 1083
NspI RCATGY 1 cut(s) 323
PagI TCATGA 1 cut(s) 226
PceI AGGCCT 2 cut(s) 913, 1219
PciI ACATGT 1 cut(s) 319
PciSI GCTCTTC 1 cut(s) 106
PcsI WCGNNNNNNNCGW 2 cut(s) 847, 952
PdiI GCCGGC 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 1188
PfeI GAWTC 1 cut(s) 665
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
Ppu21I YACGTR 2 cut(s) 373, 814
PpuMI RGGWCCY 1 cut(s) 141
PscI ACATGT 1 cut(s) 319
Psp5II RGGWCCY 1 cut(s) 141
Psp6I CCWGG 2 cut(s) 137, 1006
PspGI CCWGG 2 cut(s) 137, 1006
PspN4I GGNNCC 2 cut(s) 46, 52
PspPI GGNCC 4 cut(s) 141, 563, 959, 1010
PspPPI RGGWCCY 1 cut(s) 141
PsrI GAACNNNNNNTAC 2 cut(s) 178, 210
PstNI CAGNNNCTG 1 cut(s) 398
PsuI RGATCY 2 cut(s) 620, 644
RsaI GTAC 2 cut(s) 318, 1059
RsaNI GTAC 2 cut(s) 317, 1058
RseI CAYNNNNRTG 1 cut(s) 420
SacII CCGCGG 1 cut(s) 22
SapI GCTCTTC 1 cut(s) 106
SaqAI TTAA 2 cut(s) 284, 348
Sau3AI GATC 7 cut(s) 337, 620, 644, 782, 932, 1001, 1244
Sau96I GGNCC 4 cut(s) 141, 563, 959, 1010
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 3 cut(s) 127, 139, 1008
SduI GDGCHC 1 cut(s) 850
SexAI ACCWGGT 1 cut(s) 1006
SfaNI GCATC 2 cut(s) 385, 1090
Sfr303I CCGCGG 1 cut(s) 22
SgrBI CCGCGG 1 cut(s) 22
SinI GGWCC 4 cut(s) 141, 563, 959, 1010
SmiMI CAYNNNNRTG 1 cut(s) 420
Sse9I AATT 4 cut(s) 291, 432, 458, 936
SseBI AGGCCT 2 cut(s) 913, 1219
SspMI CTAG 1 cut(s) 662
StuI AGGCCT 2 cut(s) 913, 1219
StyD4I CCNGG 3 cut(s) 125, 137, 1006
StyI CCWWGG 1 cut(s) 773
TaaI ACNGT 1 cut(s) 529
TaiI ACGT 6 cut(s) 375, 709, 757, 816, 928, 976
TaqI TCGA 3 cut(s) 685, 841, 955
TaqII GACCGA 1 cut(s) 909
TasI AATT 4 cut(s) 291, 432, 458, 936
TatI WGTACW 2 cut(s) 316, 1057
TauI GCSGC 4 cut(s) 24, 37, 171, 781
TfiI GAWTC 1 cut(s) 665
Tru1I TTAA 2 cut(s) 284, 348
Tru9I TTAA 2 cut(s) 284, 348
TscAI CASTG 1 cut(s) 633
TseFI GTSAC 3 cut(s) 231, 505, 921
TseI GCWGC 6 cut(s) 165, 171, 180, 818, 1169, 1178
Tsp45I GTSAC 3 cut(s) 231, 505, 921
TspDTI ATGAA 2 cut(s) 78, 288
TspGWI ACGGA 1 cut(s) 961
TspRI CASTG 1 cut(s) 633
VpaK11BI GGWCC 4 cut(s) 141, 563, 959, 1010
XagI CCTNNNNNAGG 1 cut(s) 1224
XapI RAATTY 2 cut(s) 291, 458
XceI RCATGY 1 cut(s) 323
XmnI GAANNNNTTC 1 cut(s) 1188
XspI CTAG 1 cut(s) 662
Zsp2I ATGCAT 1 cut(s) 1083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.